Definition | Wolbachia endosymbiont of Culex quinquefasciatus Pel, complete genome. |
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Accession | NC_010981 |
Length | 1,482,455 |
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The map label for this gene is acm [H]
Identifier: 190570817
GI number: 190570817
Start: 409039
End: 409671
Strand: Direct
Name: acm [H]
Synonym: WPa_0386
Alternate gene names: 190570817
Gene position: 409039-409671 (Clockwise)
Preceding gene: 190570815
Following gene: 190570819
Centisome position: 27.59
GC content: 37.12
Gene sequence:
>633_bases ATGAGTGAAAAAGGTATAGACGTATCTCATTGGAATGGAGAGATTGATTGGTTGAAAGTTGCAAAGGATGAGGTAAGGTT TGCATTTGCCAAAGCAACTGAGGGAGAAACTTTTCAAGACACTAAATTTGGACAAAATTTTCAAAGTATGAAAGATAATA ATGTGCAAGCTGGGGCATATCACGTATTTAGGATGACCTCAACACCTGAAGGTCAGTTGAATAACATAGTTAACGAACTT AAAAAAGCTAATTTTGAGCCAGGTACAAATAAGTTAGCTGTTAGTGCTACAACTGGTATTTGCGAAGGAAGAACAACAAA ATGTGATGATCCTACAAAACACACTAACACACAGAGAGCCGAAAAACTTCATTCTTTATTGACTCAATTGAATGAAAAAG GATACAGTCCAATTGTATATGCTTCACCAAAAACGTGGAATGATTACTATACACAAGAAGAACATAATTTTTCTCACTAC CCATTATGGGTTGCTGATTGGAGAGGAAGATCGGAGCCTGAATTACCTAAAGATTGGAAGGATGCGGGTAAAAACTATAC TTATTGGAATTACACCTCTCAAGGAGAAGTAAACGGAATAGAGGGCCAAGTCCCGCTAGACCAAACTTTTTGA
Upstream 100 bases:
>100_bases TGTTTTAGTATAAAATTGTTTACAATATGCTCACAAGATATTCATTAAATTTTCACTATTATATTCTATATTCAACATTT ATTGTAATTATGAGGTTAGT
Downstream 100 bases:
>100_bases TATCCTAAAACTATAAAGTAGTGCTAGGGCCTAGCACTACTTTAACAGAATTCAATATTCTTGTTTTTTCCCCACCTAAA CTCAAGTTATATACAACTTT
Product: glycoside hydrolase, family 25
Products: NA
Alternate protein names: 1,4-beta-N-acetylmuramidase M1 [H]
Number of amino acids: Translated: 210; Mature: 209
Protein sequence:
>210_residues MSEKGIDVSHWNGEIDWLKVAKDEVRFAFAKATEGETFQDTKFGQNFQSMKDNNVQAGAYHVFRMTSTPEGQLNNIVNEL KKANFEPGTNKLAVSATTGICEGRTTKCDDPTKHTNTQRAEKLHSLLTQLNEKGYSPIVYASPKTWNDYYTQEEHNFSHY PLWVADWRGRSEPELPKDWKDAGKNYTYWNYTSQGEVNGIEGQVPLDQTF
Sequences:
>Translated_210_residues MSEKGIDVSHWNGEIDWLKVAKDEVRFAFAKATEGETFQDTKFGQNFQSMKDNNVQAGAYHVFRMTSTPEGQLNNIVNEL KKANFEPGTNKLAVSATTGICEGRTTKCDDPTKHTNTQRAEKLHSLLTQLNEKGYSPIVYASPKTWNDYYTQEEHNFSHY PLWVADWRGRSEPELPKDWKDAGKNYTYWNYTSQGEVNGIEGQVPLDQTF >Mature_209_residues SEKGIDVSHWNGEIDWLKVAKDEVRFAFAKATEGETFQDTKFGQNFQSMKDNNVQAGAYHVFRMTSTPEGQLNNIVNELK KANFEPGTNKLAVSATTGICEGRTTKCDDPTKHTNTQRAEKLHSLLTQLNEKGYSPIVYASPKTWNDYYTQEEHNFSHYP LWVADWRGRSEPELPKDWKDAGKNYTYWNYTSQGEVNGIEGQVPLDQTF
Specific function: This enzyme has both lysozyme (acetylmuramidase) and diacetylmuramidase activities [H]
COG id: COG3757
COG function: function code M; Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
Gene ontology:
Cell location: Secreted, extracellular space [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 25 family [H]
Homologues:
Organism=Escherichia coli, GI87082043, Length=206, Percent_Identity=28.6407766990291, Blast_Score=78, Evalue=5e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002053 - InterPro: IPR008270 - InterPro: IPR017853 - InterPro: IPR018077 - InterPro: IPR013781 [H]
Pfam domain/function: PF01183 Glyco_hydro_25 [H]
EC number: =3.2.1.17 [H]
Molecular weight: Translated: 24012; Mature: 23880
Theoretical pI: Translated: 5.63; Mature: 5.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEKGIDVSHWNGEIDWLKVAKDEVRFAFAKATEGETFQDTKFGQNFQSMKDNNVQAGAY CCCCCCCEECCCCCEEEEEHHHHHHHEEEEECCCCCCCCCCHHCCCHHHHCCCCCCCCEE HVFRMTSTPEGQLNNIVNELKKANFEPGTNKLAVSATTGICEGRTTKCDDPTKHTNTQRA EEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHH EKLHSLLTQLNEKGYSPIVYASPKTWNDYYTQEEHNFSHYPLWVADWRGRSEPELPKDWK HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHH DAGKNYTYWNYTSQGEVNGIEGQVPLDQTF HCCCCCEEEECCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SEKGIDVSHWNGEIDWLKVAKDEVRFAFAKATEGETFQDTKFGQNFQSMKDNNVQAGAY CCCCCCEECCCCCEEEEEHHHHHHHEEEEECCCCCCCCCCHHCCCHHHHCCCCCCCCEE HVFRMTSTPEGQLNNIVNELKKANFEPGTNKLAVSATTGICEGRTTKCDDPTKHTNTQRA EEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHH EKLHSLLTQLNEKGYSPIVYASPKTWNDYYTQEEHNFSHYPLWVADWRGRSEPELPKDWK HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHH DAGKNYTYWNYTSQGEVNGIEGQVPLDQTF HCCCCCEEEECCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2341041 [H]