Definition | Wolbachia endosymbiont of Culex quinquefasciatus Pel, complete genome. |
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Accession | NC_010981 |
Length | 1,482,455 |
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The map label for this gene is recO
Identifier: 190570798
GI number: 190570798
Start: 384530
End: 385258
Strand: Reverse
Name: recO
Synonym: WPa_0359
Alternate gene names: 190570798
Gene position: 385258-384530 (Counterclockwise)
Preceding gene: 190570800
Following gene: 190570789
Centisome position: 25.99
GC content: 30.73
Gene sequence:
>729_bases ATGAGATGGAAAGATGAAGGTGTTATTATAGCTGTTAAAAAATACGGTGATAAAAATTTAATTCTTTCTCTATTTACAAA AAATCATGGAAAGTGCAGAGGATTAACTAGGTTAACAAACAATAGCAATTATAAGTTTCAAATAAGTAATCTATTACATG CAGAATGGAGTGCTAAGCTACCTGAAAATCTAGGTTTTTTAAAGTGCGAATTGATTGAATCTCCATTTCATCATTTCTTT CAAGATAGGTTAAAAAGCATTGCTATTGTTTCTTTCTCGTCTATATTAGAAAAAGTGCTTCCAGAAAGTGAATCCTGCAT CAAGTTATATGATAATTTTAGACACTTCATCGATGTAATAAAACATAATAGCCAGTTTTGGCAAAGTCATTACCTTAACT TAGAGCTTCTGCTTCTTACGCAACTTGGATTTAAGTTAGACCTATCAAAATGTGCTGTAACAGGTGTGAAAGAAAATCTA CAATTTATTTCTCCAAAAACTGGTAGAGCAGTGTCAAAAAAAGTAGGTGACTGTTATGCAGATAAATTACTACCTTTTCC ACAGATGTTGCATGATGTATACAATAACAACCTACAAAATAGCTACTCATATCAAGAATTCAGACTAGGGTTAAAAATTA CAGGGTATTTTTTAAATAAATATCTATTTCTGCAGTTAAATGCGAAATTTCCGGAGTTGAGAAATTTTATGCTATCATTT GAATCTTAG
Upstream 100 bases:
>100_bases AATATTGCACATAAAGTCAATATATTTCAGTTGACTTAAACTCAAATTTGCTACACTAATTTTATTATCTCTATAATATC ATATGGTCAATATACTCTGA
Downstream 100 bases:
>100_bases TTACTACTTATTTGAAAGAACTTCAACCAGTAACCACTCTATTTCTACCACTGTTTTTTGCTTTATATAAATATTTGTCA GCACGTACTATAAATTTTTT
Product: DNA repair protein RecO
Products: NA
Alternate protein names: Recombination protein O
Number of amino acids: Translated: 242; Mature: 242
Protein sequence:
>242_residues MRWKDEGVIIAVKKYGDKNLILSLFTKNHGKCRGLTRLTNNSNYKFQISNLLHAEWSAKLPENLGFLKCELIESPFHHFF QDRLKSIAIVSFSSILEKVLPESESCIKLYDNFRHFIDVIKHNSQFWQSHYLNLELLLLTQLGFKLDLSKCAVTGVKENL QFISPKTGRAVSKKVGDCYADKLLPFPQMLHDVYNNNLQNSYSYQEFRLGLKITGYFLNKYLFLQLNAKFPELRNFMLSF ES
Sequences:
>Translated_242_residues MRWKDEGVIIAVKKYGDKNLILSLFTKNHGKCRGLTRLTNNSNYKFQISNLLHAEWSAKLPENLGFLKCELIESPFHHFF QDRLKSIAIVSFSSILEKVLPESESCIKLYDNFRHFIDVIKHNSQFWQSHYLNLELLLLTQLGFKLDLSKCAVTGVKENL QFISPKTGRAVSKKVGDCYADKLLPFPQMLHDVYNNNLQNSYSYQEFRLGLKITGYFLNKYLFLQLNAKFPELRNFMLSF ES >Mature_242_residues MRWKDEGVIIAVKKYGDKNLILSLFTKNHGKCRGLTRLTNNSNYKFQISNLLHAEWSAKLPENLGFLKCELIESPFHHFF QDRLKSIAIVSFSSILEKVLPESESCIKLYDNFRHFIDVIKHNSQFWQSHYLNLELLLLTQLGFKLDLSKCAVTGVKENL QFISPKTGRAVSKKVGDCYADKLLPFPQMLHDVYNNNLQNSYSYQEFRLGLKITGYFLNKYLFLQLNAKFPELRNFMLSF ES
Specific function: Involved in DNA repair and recF pathway recombination
COG id: COG1381
COG function: function code L; Recombinational DNA repair protein (RecF pathway)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the recO family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): RECO_WOLPP (B3CPG9)
Other databases:
- EMBL: AM999887 - RefSeq: YP_001975156.1 - EnsemblBacteria: EBWOLT00000000142 - GeneID: 6384386 - GenomeReviews: AM999887_GR - KEGG: wpi:WPa_0359 - GeneTree: EBGT00050000030909 - HOGENOM: HBG474229 - OMA: PERDPHP - ProtClustDB: PRK00085 - HAMAP: MF_00201 - InterPro: IPR001164 - InterPro: IPR022572 - InterPro: IPR016027 - InterPro: IPR003717 - TIGRFAMs: TIGR00613
Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB
EC number: NA
Molecular weight: Translated: 28233; Mature: 28233
Theoretical pI: Translated: 9.56; Mature: 9.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRWKDEGVIIAVKKYGDKNLILSLFTKNHGKCRGLTRLTNNSNYKFQISNLLHAEWSAKL CCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCEEEECCCCCEEEEECCHHHHHHCCCC PENLGFLKCELIESPFHHFFQDRLKSIAIVSFSSILEKVLPESESCIKLYDNFRHFIDVI CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH KHNSQFWQSHYLNLELLLLTQLGFKLDLSKCAVTGVKENLQFISPKTGRAVSKKVGDCYA HCCHHHHHHHCCCCEEEEEHHCCCEEEHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHH DKLLPFPQMLHDVYNNNLQNSYSYQEFRLGLKITGYFLNKYLFLQLNAKFPELRNFMLSF HHCCCHHHHHHHHHCCCCCCCCCHHHHEECCEEEEEECCEEEEEEECCCCHHHHHHHHHC ES CC >Mature Secondary Structure MRWKDEGVIIAVKKYGDKNLILSLFTKNHGKCRGLTRLTNNSNYKFQISNLLHAEWSAKL CCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCEEEECCCCCEEEEECCHHHHHHCCCC PENLGFLKCELIESPFHHFFQDRLKSIAIVSFSSILEKVLPESESCIKLYDNFRHFIDVI CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH KHNSQFWQSHYLNLELLLLTQLGFKLDLSKCAVTGVKENLQFISPKTGRAVSKKVGDCYA HCCHHHHHHHCCCCEEEEEHHCCCEEEHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHH DKLLPFPQMLHDVYNNNLQNSYSYQEFRLGLKITGYFLNKYLFLQLNAKFPELRNFMLSF HHCCCHHHHHHHHHCCCCCCCCCHHHHEECCEEEEEECCEEEEEEECCCCHHHHHHHHHC ES CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA