Definition | Wolbachia endosymbiont of Culex quinquefasciatus Pel, complete genome. |
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Accession | NC_010981 |
Length | 1,482,455 |
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The map label for this gene is clpB [H]
Identifier: 190570794
GI number: 190570794
Start: 375604
End: 378165
Strand: Direct
Name: clpB [H]
Synonym: WPa_0355
Alternate gene names: 190570794
Gene position: 375604-378165 (Clockwise)
Preceding gene: 190570793
Following gene: 190570795
Centisome position: 25.34
GC content: 37.43
Gene sequence:
>2562_bases ATGGACTTGAATAAATTTACCGAAAAAGCAAAAAGCCTAATCCAGAGAGCTCAAATGAAAGCATTGGGAGCTGGGCATCA GATTTTTATGCCTGAACATTTACTTAAAGTAATGCTTGAAGATGAGTCAGGTTTAGTTCAGGATTTGATAGGCACCTGTG GTGGAAATGTTCAGAATATTTCTGATGCTGTGAGTAGTACAATTAAAAAGTTTCCAGTGGTTGGAGGACCAGGTAGTGTT GGACTTCAGCTTTCAAGAGAGGTAGCAAAAGTTTTTGATGATTCAATTGGTATTGCGAGGAAAAATAAAGACACATTTGT TACTGTTGAGCGGTTGTTGCAGGGCCTTGCTGCACAAAAAGATGAAATTGTAGGTAAAATTTTAGCAGAAGGTGGTGTAA CACCGCAAAAATTAAATTCAGTTATTGCAGAAATGAGAAAAGGTGGCAGTGCAGACTCTCCAAATAGCGAGGAAAAATTA AATGCGGCAAAGAGGTATACAAAAGATATTACAGAGCTTGCTATGCAAGGTAAGCTTGATCCTGTAATTGGTCGTGATGA GGAAATCAGAAGAACTATGCAGGTATCGTTGAGGCGAACAAAAAATAATCCAGTACTGATAGGTGAACCTGGTGTTGGAA AAACTGCAATAGTTGAAGGTTTAGCAAACAGAATTGTTGCAAATGATGTACCACTTGGTTTGCGTGATGCAAAAGTTTTA GCTTTGGATCTTGGTGCATTAATTGCTGGAACAAAATTTAGAGGGGAGTTTGAAGAGAGACTAAAAGCAGTGATTAATGA GATTTTAAAAGCAGAGGGCAAAGTTATTTTGTTTATAGATGAGCTTCATACTTTAGTGGGAGCAGGAGCGACAAGTGGTG CGATGGATGCTTCAAATTTGCTCAAGCCTGCTCTTGCGCGTGGAGAAATTCGCTGTATAGGGGCTACAACTTTGGATGAG TATCGTCAACATATAGAGAAAGACCCTGCGCTTGCAAGGCGTTTTCAGCCTGTGTTTATTTCTCAACCGACTGAGACTGA TACTATTTCAATACTGAGGGGTTTGAAGGAGAGGTATGAGGTGCACCATGGTATTAGAATCACAGATGGTGCAATAATCG CTGCTGCAACGCTTTCTAATAGATATATAACAGATAGGTTTTTACCTGATAAAGCGATCGATTTAATTGATGAAGCAGCA AGTAGGGTTAGAATTGAAATGGACAGCAAGCCTGAGGTTGTTGATGAGCTTGAAAGAAAGATTATACAGCTGAAAATTGA GTCAGAGGCTTTGAAAAAAGAAAGTGATGAAAACTCTAAGCAACGTTTAAAAAAGATAAATGAGGAAATTGAGAGTCTAA ACAGTAAATTTGCTGACTTAAGCAGTAAATGGCAGATGGAAAAGAATAAAATAGCTAAAATACAAGAAACTGCTGAAAAA TTGGATAATGCGAGGAAAGAGCTAGAATTGGCTCAGCGGAATGGAAATTTAGGAAGGGCAGGGGAATTGATGTATGGTGT GATTCCTCAACTTGAAAATGAGTTAAAAAATCAGGAAAAAGTTACTGATAGTTTCCTAAAGAAAGAAGTTACTGAGAGTG ATATTGCAAATATTGTTTCAAAATGGACAGGCATTCCAGTTGATAACATGATGCATAGTGAAAAGGAAAAGCTCCTTAAC ATGGAAAATGAAATAGGAAAAAGAGTAATAGGGCAGAGAGATGCAATTGAAGCGATAAGTAATGCAGTAAGGCGCTCCCG TTCTGGTGTTCAGGATACTAATCGACCTTTTGGTTCATTTTTATTCTTAGGTCCAACCGGAGTTGGAAAAACAGAGTTAG CAAAATCTCTTGCCGAATTTTTGTTTGATGATCAATCAGCACTTCTACGCTTTGATATGTCAGAGTATATGGAAAAACAC TCCGTTTCAAAGTTAATTGGTGCGCCTCCAGGATATGTTGGTTATGAACAAGGTGGCAGATTAACCGAAGCAGTAAGGAG AAGACCATATCAGGTAATTTTGTTTGATGAGATAGAAAAGGCAAATCCAGATATATTTAATATACTACTGCAGATTTTGG ATGAAGGTAGACTAACCGATAGCCATGGCAAATTAATTGATTTTCGTAATACCATACTAATTTTAACTTCTAACCTTGGA GCTGAGATGATGCTAAGAGGAGCTACCGAATCTGTGAAAGATGAGGTGATGAAAATAGTTAAGTCAGCGTTTCGTCCAGA ATTTTTAAATAGACTGGATGAAATTATTATATTCCACAGCTTAACCAAAGATGACATTGATAAAATTATAGATGTTCAAT TCTCTTATTTACAAAAGATGCTTGCTAAGCGTAAACTGAGTATTAGTTTATCGCAAGAAGCTAAAGGACTAATAGCACAA ACTGGATATGACCCTGAATATGGAGCGCGGCCTCTGAAAAGGGTAATACAAGAATGCATTCAAAATAATCTAGCTAAGTT AGTTTTATCTGGGGAAATAGTAGAAGGAGATGAGCTAATAGTGTATACTTCTGGTAACGAAATCTTAGTTAAAAAGATCT AG
Upstream 100 bases:
>100_bases TGGATTTTAATCCATAGTGGTTGAATGCTGAATGACTTTAAGTTTAAAATTGAGAAAGTAGTTGTTATATATATCAGCAA GTATGAGTTAAATTTGTATT
Downstream 100 bases:
>100_bases ATTCGCTGTGTATTTTTGTTTTGAAAAATGTGTATAAATCATAATGTTAATGTTGAGTCTTTATTTAAGCTAGTTGATCA AGGGAATAAAAAAGAGAAAG
Product: ATP-dependent Clp protease, ATP-binding subunit ClpB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 853; Mature: 853
Protein sequence:
>853_residues MDLNKFTEKAKSLIQRAQMKALGAGHQIFMPEHLLKVMLEDESGLVQDLIGTCGGNVQNISDAVSSTIKKFPVVGGPGSV GLQLSREVAKVFDDSIGIARKNKDTFVTVERLLQGLAAQKDEIVGKILAEGGVTPQKLNSVIAEMRKGGSADSPNSEEKL NAAKRYTKDITELAMQGKLDPVIGRDEEIRRTMQVSLRRTKNNPVLIGEPGVGKTAIVEGLANRIVANDVPLGLRDAKVL ALDLGALIAGTKFRGEFEERLKAVINEILKAEGKVILFIDELHTLVGAGATSGAMDASNLLKPALARGEIRCIGATTLDE YRQHIEKDPALARRFQPVFISQPTETDTISILRGLKERYEVHHGIRITDGAIIAAATLSNRYITDRFLPDKAIDLIDEAA SRVRIEMDSKPEVVDELERKIIQLKIESEALKKESDENSKQRLKKINEEIESLNSKFADLSSKWQMEKNKIAKIQETAEK LDNARKELELAQRNGNLGRAGELMYGVIPQLENELKNQEKVTDSFLKKEVTESDIANIVSKWTGIPVDNMMHSEKEKLLN MENEIGKRVIGQRDAIEAISNAVRRSRSGVQDTNRPFGSFLFLGPTGVGKTELAKSLAEFLFDDQSALLRFDMSEYMEKH SVSKLIGAPPGYVGYEQGGRLTEAVRRRPYQVILFDEIEKANPDIFNILLQILDEGRLTDSHGKLIDFRNTILILTSNLG AEMMLRGATESVKDEVMKIVKSAFRPEFLNRLDEIIIFHSLTKDDIDKIIDVQFSYLQKMLAKRKLSISLSQEAKGLIAQ TGYDPEYGARPLKRVIQECIQNNLAKLVLSGEIVEGDELIVYTSGNEILVKKI
Sequences:
>Translated_853_residues MDLNKFTEKAKSLIQRAQMKALGAGHQIFMPEHLLKVMLEDESGLVQDLIGTCGGNVQNISDAVSSTIKKFPVVGGPGSV GLQLSREVAKVFDDSIGIARKNKDTFVTVERLLQGLAAQKDEIVGKILAEGGVTPQKLNSVIAEMRKGGSADSPNSEEKL NAAKRYTKDITELAMQGKLDPVIGRDEEIRRTMQVSLRRTKNNPVLIGEPGVGKTAIVEGLANRIVANDVPLGLRDAKVL ALDLGALIAGTKFRGEFEERLKAVINEILKAEGKVILFIDELHTLVGAGATSGAMDASNLLKPALARGEIRCIGATTLDE YRQHIEKDPALARRFQPVFISQPTETDTISILRGLKERYEVHHGIRITDGAIIAAATLSNRYITDRFLPDKAIDLIDEAA SRVRIEMDSKPEVVDELERKIIQLKIESEALKKESDENSKQRLKKINEEIESLNSKFADLSSKWQMEKNKIAKIQETAEK LDNARKELELAQRNGNLGRAGELMYGVIPQLENELKNQEKVTDSFLKKEVTESDIANIVSKWTGIPVDNMMHSEKEKLLN MENEIGKRVIGQRDAIEAISNAVRRSRSGVQDTNRPFGSFLFLGPTGVGKTELAKSLAEFLFDDQSALLRFDMSEYMEKH SVSKLIGAPPGYVGYEQGGRLTEAVRRRPYQVILFDEIEKANPDIFNILLQILDEGRLTDSHGKLIDFRNTILILTSNLG AEMMLRGATESVKDEVMKIVKSAFRPEFLNRLDEIIIFHSLTKDDIDKIIDVQFSYLQKMLAKRKLSISLSQEAKGLIAQ TGYDPEYGARPLKRVIQECIQNNLAKLVLSGEIVEGDELIVYTSGNEILVKKI >Mature_853_residues MDLNKFTEKAKSLIQRAQMKALGAGHQIFMPEHLLKVMLEDESGLVQDLIGTCGGNVQNISDAVSSTIKKFPVVGGPGSV GLQLSREVAKVFDDSIGIARKNKDTFVTVERLLQGLAAQKDEIVGKILAEGGVTPQKLNSVIAEMRKGGSADSPNSEEKL NAAKRYTKDITELAMQGKLDPVIGRDEEIRRTMQVSLRRTKNNPVLIGEPGVGKTAIVEGLANRIVANDVPLGLRDAKVL ALDLGALIAGTKFRGEFEERLKAVINEILKAEGKVILFIDELHTLVGAGATSGAMDASNLLKPALARGEIRCIGATTLDE YRQHIEKDPALARRFQPVFISQPTETDTISILRGLKERYEVHHGIRITDGAIIAAATLSNRYITDRFLPDKAIDLIDEAA SRVRIEMDSKPEVVDELERKIIQLKIESEALKKESDENSKQRLKKINEEIESLNSKFADLSSKWQMEKNKIAKIQETAEK LDNARKELELAQRNGNLGRAGELMYGVIPQLENELKNQEKVTDSFLKKEVTESDIANIVSKWTGIPVDNMMHSEKEKLLN MENEIGKRVIGQRDAIEAISNAVRRSRSGVQDTNRPFGSFLFLGPTGVGKTELAKSLAEFLFDDQSALLRFDMSEYMEKH SVSKLIGAPPGYVGYEQGGRLTEAVRRRPYQVILFDEIEKANPDIFNILLQILDEGRLTDSHGKLIDFRNTILILTSNLG AEMMLRGATESVKDEVMKIVKSAFRPEFLNRLDEIIIFHSLTKDDIDKIIDVQFSYLQKMLAKRKLSISLSQEAKGLIAQ TGYDPEYGARPLKRVIQECIQNNLAKLVLSGEIVEGDELIVYTSGNEILVKKI
Specific function: Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase
COG id: COG0542
COG function: function code O; ATPases with chaperone activity, ATP-binding subunit
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the clpA/clpB family [H]
Homologues:
Organism=Homo sapiens, GI13540606, Length=300, Percent_Identity=36, Blast_Score=199, Evalue=8e-51, Organism=Escherichia coli, GI1788943, Length=843, Percent_Identity=54.9228944246738, Blast_Score=936, Evalue=0.0, Organism=Escherichia coli, GI1787109, Length=319, Percent_Identity=45.4545454545455, Blast_Score=287, Evalue=2e-78, Organism=Saccharomyces cerevisiae, GI6320464, Length=709, Percent_Identity=52.8913963328632, Blast_Score=765, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6323002, Length=855, Percent_Identity=41.6374269005848, Blast_Score=637, Evalue=0.0,
Paralogues:
None
Copy number: 560 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR013093 - InterPro: IPR003959 - InterPro: IPR018368 - InterPro: IPR017730 - InterPro: IPR001270 - InterPro: IPR019489 - InterPro: IPR004176 - InterPro: IPR023150 [H]
Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF02861 Clp_N; PF10431 ClpB_D2-small [H]
EC number: NA
Molecular weight: Translated: 94719; Mature: 94719
Theoretical pI: Translated: 6.41; Mature: 6.41
Prosite motif: PS00870 CLPAB_1 ; PS00871 CLPAB_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLNKFTEKAKSLIQRAQMKALGAGHQIFMPEHLLKVMLEDESGLVQDLIGTCGGNVQNI CCHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCHHHHHHHHCCCCHHHH SDAVSSTIKKFPVVGGPGSVGLQLSREVAKVFDDSIGIARKNKDTFVTVERLLQGLAAQK HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH DEIVGKILAEGGVTPQKLNSVIAEMRKGGSADSPNSEEKLNAAKRYTKDITELAMQGKLD HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC PVIGRDEEIRRTMQVSLRRTKNNPVLIGEPGVGKTAIVEGLANRIVANDVPLGLRDAKVL CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHH ALDLGALIAGTKFRGEFEERLKAVINEILKAEGKVILFIDELHTLVGAGATSGAMDASNL HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCCCCCHHHH LKPALARGEIRCIGATTLDEYRQHIEKDPALARRFQPVFISQPTETDTISILRGLKERYE HHHHHHCCCEEEEECCHHHHHHHHHCCCHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHH VHHGIRITDGAIIAAATLSNRYITDRFLPDKAIDLIDEAASRVRIEMDSKPEVVDELERK HHCCEEEECCCEEEEEHHCCCCHHHHCCCHHHHHHHHHHHHHEEEECCCCCHHHHHHHHH IIQLKIESEALKKESDENSKQRLKKINEEIESLNSKFADLSSKWQMEKNKIAKIQETAEK HHHHEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDNARKELELAQRNGNLGRAGELMYGVIPQLENELKNQEKVTDSFLKKEVTESDIANIVS HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KWTGIPVDNMMHSEKEKLLNMENEIGKRVIGQRDAIEAISNAVRRSRSGVQDTNRPFGSF HHCCCCHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCE LFLGPTGVGKTELAKSLAEFLFDDQSALLRFDMSEYMEKHSVSKLIGAPPGYVGYEQGGR EEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH LTEAVRRRPYQVILFDEIEKANPDIFNILLQILDEGRLTDSHGKLIDFRNTILILTSNLG HHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEECCCC AEMMLRGATESVKDEVMKIVKSAFRPEFLNRLDEIIIFHSLTKDDIDKIIDVQFSYLQKM HHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH LAKRKLSISLSQEAKGLIAQTGYDPEYGARPLKRVIQECIQNNLAKLVLSGEIVEGDELI HHHHHHCEEECHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCEEE VYTSGNEILVKKI EEECCCEEEEEEC >Mature Secondary Structure MDLNKFTEKAKSLIQRAQMKALGAGHQIFMPEHLLKVMLEDESGLVQDLIGTCGGNVQNI CCHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCHHHHHHHHCCCCHHHH SDAVSSTIKKFPVVGGPGSVGLQLSREVAKVFDDSIGIARKNKDTFVTVERLLQGLAAQK HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH DEIVGKILAEGGVTPQKLNSVIAEMRKGGSADSPNSEEKLNAAKRYTKDITELAMQGKLD HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC PVIGRDEEIRRTMQVSLRRTKNNPVLIGEPGVGKTAIVEGLANRIVANDVPLGLRDAKVL CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHH ALDLGALIAGTKFRGEFEERLKAVINEILKAEGKVILFIDELHTLVGAGATSGAMDASNL HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCCCCCHHHH LKPALARGEIRCIGATTLDEYRQHIEKDPALARRFQPVFISQPTETDTISILRGLKERYE HHHHHHCCCEEEEECCHHHHHHHHHCCCHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHH VHHGIRITDGAIIAAATLSNRYITDRFLPDKAIDLIDEAASRVRIEMDSKPEVVDELERK HHCCEEEECCCEEEEEHHCCCCHHHHCCCHHHHHHHHHHHHHEEEECCCCCHHHHHHHHH IIQLKIESEALKKESDENSKQRLKKINEEIESLNSKFADLSSKWQMEKNKIAKIQETAEK HHHHEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDNARKELELAQRNGNLGRAGELMYGVIPQLENELKNQEKVTDSFLKKEVTESDIANIVS HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KWTGIPVDNMMHSEKEKLLNMENEIGKRVIGQRDAIEAISNAVRRSRSGVQDTNRPFGSF HHCCCCHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCE LFLGPTGVGKTELAKSLAEFLFDDQSALLRFDMSEYMEKHSVSKLIGAPPGYVGYEQGGR EEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH LTEAVRRRPYQVILFDEIEKANPDIFNILLQILDEGRLTDSHGKLIDFRNTILILTSNLG HHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEECCCC AEMMLRGATESVKDEVMKIVKSAFRPEFLNRLDEIIIFHSLTKDDIDKIIDVQFSYLQKM HHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH LAKRKLSISLSQEAKGLIAQTGYDPEYGARPLKRVIQECIQNNLAKLVLSGEIVEGDELI HHHHHHCEEECHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCEEE VYTSGNEILVKKI EEECCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA