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The map label for this gene is radC [C]

Identifier: 190570723

GI number: 190570723

Start: 280207

End: 280863

Strand: Reverse

Name: radC [C]

Synonym: WPa_0276

Alternate gene names: 190570723

Gene position: 280863-280207 (Counterclockwise)

Preceding gene: 190570724

Following gene: 190570722

Centisome position: 18.95

GC content: 36.07

Gene sequence:

>657_bases
ATGAATAAAAGTAAAGAAGAAATCGAATTCAGAATATTAGAAAGCAAAGGCAAAGCATTACTTGATCGTGAAATAATGGA
AACGTTTCTAAGTGCAGTACATGAAAGGCCACAAGCTCAAGAAATTGCTAAAAATCTGGTGAATAGCTATACAGGAGTAG
GAAGGATTTTAGGCCGAGAAATGGATGACCTGAAAGTTATAGAAGGAGTAACTGATTCTGCAGTAGCAATGATTATGTGT
GTTAAGGAAACACTAGAAAGGGTGCTCAGAGAAAAGCTTAAGAGTGAGCCAATAATGGACTTACAAGGGCTAGTAGAGTA
TTTGAACGTAAGTATAGGACACTCAGAAAGGGAATGTGTAAAAATACTGTACTTGAATAAAAGGCGCCAATTAATCGGAG
AAGAATCCTATATTGGTGAAATGGAAAAAGCACCAGTATACATAAAGGAAATTACAAGAAAAGCATTAATAAAAAATGCA
ACATTAGTAATAATGTCACATAACCATCCTGGAGGGAGTTTAGAGCCATCAGAAGAAGATCAAGAAGTAACGAAGAGCTT
AGCAGCAGCATGTAGTACTGTAAGCGTTAGATTATTTGACCATATTATCATCACAAGTGGAGGCTATTTCAGCTTTCGAG
AGAACGGATTATTATAG

Upstream 100 bases:

>100_bases
TGATTTGACTTCACTCGAAAGCTATGGCTTTATGCCAATGCTGATAAAAAACAGCAGTAAATATTTAAAAAAAGTTTGTT
GTTAGTGAAGGGTAAATTAT

Downstream 100 bases:

>100_bases
CAGAAAGTATTTGCAAATCTACTCACTATAATTTATAATGAGTAGTAGAGTGTATAACAACTATACACTTAGAAAGTATT
TTTAATAGCGGAGGCTAATA

Product: Putative dna repair protein radc

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MNKSKEEIEFRILESKGKALLDREIMETFLSAVHERPQAQEIAKNLVNSYTGVGRILGREMDDLKVIEGVTDSAVAMIMC
VKETLERVLREKLKSEPIMDLQGLVEYLNVSIGHSERECVKILYLNKRRQLIGEESYIGEMEKAPVYIKEITRKALIKNA
TLVIMSHNHPGGSLEPSEEDQEVTKSLAAACSTVSVRLFDHIIITSGGYFSFRENGLL

Sequences:

>Translated_218_residues
MNKSKEEIEFRILESKGKALLDREIMETFLSAVHERPQAQEIAKNLVNSYTGVGRILGREMDDLKVIEGVTDSAVAMIMC
VKETLERVLREKLKSEPIMDLQGLVEYLNVSIGHSERECVKILYLNKRRQLIGEESYIGEMEKAPVYIKEITRKALIKNA
TLVIMSHNHPGGSLEPSEEDQEVTKSLAAACSTVSVRLFDHIIITSGGYFSFRENGLL
>Mature_218_residues
MNKSKEEIEFRILESKGKALLDREIMETFLSAVHERPQAQEIAKNLVNSYTGVGRILGREMDDLKVIEGVTDSAVAMIMC
VKETLERVLREKLKSEPIMDLQGLVEYLNVSIGHSERECVKILYLNKRRQLIGEESYIGEMEKAPVYIKEITRKALIKNA
TLVIMSHNHPGGSLEPSEEDQEVTKSLAAACSTVSVRLFDHIIITSGGYFSFRENGLL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=202, Percent_Identity=26.7326732673267, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI1788312, Length=144, Percent_Identity=35.4166666666667, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788997, Length=135, Percent_Identity=36.2962962962963, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI2367100, Length=114, Percent_Identity=36.8421052631579, Blast_Score=90, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 24571; Mature: 24571

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSKEEIEFRILESKGKALLDREIMETFLSAVHERPQAQEIAKNLVNSYTGVGRILGRE
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
MDDLKVIEGVTDSAVAMIMCVKETLERVLREKLKSEPIMDLQGLVEYLNVSIGHSERECV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH
KILYLNKRRQLIGEESYIGEMEKAPVYIKEITRKALIKNATLVIMSHNHPGGSLEPSEED
HHHHHHHHHHHHCCHHHHCCHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHH
QEVTKSLAAACSTVSVRLFDHIIITSGGYFSFRENGLL
HHHHHHHHHHHHHHHHHHHHHHHEECCCEEECCCCCCC
>Mature Secondary Structure
MNKSKEEIEFRILESKGKALLDREIMETFLSAVHERPQAQEIAKNLVNSYTGVGRILGRE
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
MDDLKVIEGVTDSAVAMIMCVKETLERVLREKLKSEPIMDLQGLVEYLNVSIGHSERECV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH
KILYLNKRRQLIGEESYIGEMEKAPVYIKEITRKALIKNATLVIMSHNHPGGSLEPSEED
HHHHHHHHHHHHCCHHHHCCHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHH
QEVTKSLAAACSTVSVRLFDHIIITSGGYFSFRENGLL
HHHHHHHHHHHHHHHHHHHHHHHEECCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA