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The map label for this gene is rlpA [C]

Identifier: 189499232

GI number: 189499232

Start: 243996

End: 244508

Strand: Reverse

Name: rlpA [C]

Synonym: Cphamn1_0252

Alternate gene names: 189499232

Gene position: 244508-243996 (Counterclockwise)

Preceding gene: 189499235

Following gene: 189499226

Centisome position: 8.94

GC content: 46.78

Gene sequence:

>513_bases
ATGTATAACGGACGAATAGCATTCGCCTCGCCTTTTTTTATAGTCATTTTTTCTCTTCTCCAACTGACAGGGTGTCAGTC
AAGCTCTAATTATACATCGATACAATCGGGAATCTCAGCAGCACCGATTCCTAGCGAGATAACAAGCTCGCTTCAGCTGG
AGCGTGATTCTCTTGCTGCGGCTGATGCGGAAGACGAACTCGGCAAACTGTTCATGGTCAAGGAAGGAAAAGCATCATAC
TATGCCGACAGGTTTCATGGCCGCCTTACAGCCAACGGTGAGCGCTTCAATATGCATGAACTGACTGCCGCTCATAAATC
CCTGCCCTTCGGCTCCATGGTACGCGTGACCAACCTTAACAACGGCAGAAAAGTTATGGTCAGAATCAATGACCGCGGTC
CCTATATAAAAGGGAGAATCATCGATCTATCACTCGAAGCAGCTAAAGAGATCAACCTGCTGAAAAAAGGTGTCGCGAAA
GTACGTATAGAGGTCTATGAAGGTGATTCATAG

Upstream 100 bases:

>100_bases
ATAATTTCGGTTTCAGGTATTTTCGTAAAAATATCTTCTGTTCCCGGCCTTCACAGGAAGTATTCATCTGGAACAGATTT
TTTAATCAAACCCAGACAGT

Downstream 100 bases:

>100_bases
ACTGATAACGGATGCACCAGCTTGAATAACTCCCGTGATTCCGCGGGAGTTTTTTTTTGCCCTCTCATCGTTTCTATTCA
TTTTCACGATGCACCTCTAC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MYNGRIAFASPFFIVIFSLLQLTGCQSSSNYTSIQSGISAAPIPSEITSSLQLERDSLAAADAEDELGKLFMVKEGKASY
YADRFHGRLTANGERFNMHELTAAHKSLPFGSMVRVTNLNNGRKVMVRINDRGPYIKGRIIDLSLEAAKEINLLKKGVAK
VRIEVYEGDS

Sequences:

>Translated_170_residues
MYNGRIAFASPFFIVIFSLLQLTGCQSSSNYTSIQSGISAAPIPSEITSSLQLERDSLAAADAEDELGKLFMVKEGKASY
YADRFHGRLTANGERFNMHELTAAHKSLPFGSMVRVTNLNNGRKVMVRINDRGPYIKGRIIDLSLEAAKEINLLKKGVAK
VRIEVYEGDS
>Mature_170_residues
MYNGRIAFASPFFIVIFSLLQLTGCQSSSNYTSIQSGISAAPIPSEITSSLQLERDSLAAADAEDELGKLFMVKEGKASY
YADRFHGRLTANGERFNMHELTAAHKSLPFGSMVRVTNLNNGRKVMVRINDRGPYIKGRIIDLSLEAAKEINLLKKGVAK
VRIEVYEGDS

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=91, Percent_Identity=48.3516483516484, Blast_Score=86, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 18736; Mature: 18736

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNGRIAFASPFFIVIFSLLQLTGCQSSSNYTSIQSGISAAPIPSEITSSLQLERDSLAA
CCCCEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCHHHHHHHEECCHHHCC
ADAEDELGKLFMVKEGKASYYADRFHGRLTANGERFNMHELTAAHKSLPFGSMVRVTNLN
CCCCCCCCEEEEEECCCCHHHHHHHCCEEEECCCEECHHHHHHHHHCCCCCCEEEEEECC
NGRKVMVRINDRGPYIKGRIIDLSLEAAKEINLLKKGVAKVRIEVYEGDS
CCCEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHCCCEEEEEEEEECCC
>Mature Secondary Structure
MYNGRIAFASPFFIVIFSLLQLTGCQSSSNYTSIQSGISAAPIPSEITSSLQLERDSLAA
CCCCEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCHHHHHHHEECCHHHCC
ADAEDELGKLFMVKEGKASYYADRFHGRLTANGERFNMHELTAAHKSLPFGSMVRVTNLN
CCCCCCCCEEEEEECCCCHHHHHHHCCEEEECCCEECHHHHHHHHHCCCCCCEEEEEECC
NGRKVMVRINDRGPYIKGRIIDLSLEAAKEINLLKKGVAKVRIEVYEGDS
CCCEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]