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The map label for this gene is 189499121

Identifier: 189499121

GI number: 189499121

Start: 128959

End: 129735

Strand: Reverse

Name: 189499121

Synonym: Cphamn1_0131

Alternate gene names: NA

Gene position: 129735-128959 (Counterclockwise)

Preceding gene: 189499122

Following gene: 189499104

Centisome position: 4.74

GC content: 58.04

Gene sequence:

>777_bases
ATGAGTGAAACCATGAAGAAGCTCAGACCGAGTGGCGGATACCGAGACACAGCAAGTTTCCAGACGGCCACACTCATTTA
TGATGCGACCTACTGGTTCTGCGAAAAGTTCATGGATTCCAGATCACGAACCGTGGATCAGATGGTCCAGGCCTCCCGTT
CAGGACGACAGAACATCGCGGAAGGAAGCAGTGCTGCGGCCACGTCGTCGCAGACCGAGCTGCGCCTGATCAACGTTGCA
AGGGCAAGCCTCGAAGAACTGCTGCTCGACTACGAAGATTTCCTTCGCCATCGGCGCCTCACGCAGTGGACGCCCGACTG
TCCCGAAGCAAGAGCTGTTCGTGACGTACCAAAGCGGTTCAGGCAAACCCAGCCTGATCAGGCTGATCCGTCGGATCTTA
CCTCTTTGACGGATCAGCAACGATGGGCACTCTACGCGCACTGGATCGAACACGACGACCCCGCCCTGCGCGCCAACACC
CTGATCTGCCTGATCAACCAGGCCAATTACCTGCTCGACCGGCAAATTGCCACCCTGGAGATAGCGTTTGTCGAGGGCGG
CGGCTACAGCGAGCAACTTGCAGCCGCTCGGTTGGTCGAACGACAACGCCATGCGAGCGATCAGTCAGATCAGAGAGATC
CGACTGATCACATCCCACCCTGTCCCCAGTGCGGAAAGCCGATGGTATTGCGTACGGCCCAGGCCGGCAAGAACGCGGGC
AGACAATTCTGGGGCTGCACAGCCTATCCCGATTGCCGGGGAGTTGTGAATGTCTAA

Upstream 100 bases:

>100_bases
CGTATTTATGATGTATATTATTTGCTAGGCACACGAAAATCTGAAAGCGACCTTGTGTGCGCTACATCAAGAACTCTGTT
TCGATCAATCAATCTGCAGC

Downstream 100 bases:

>100_bases
GAGAGATCGGACAGATCAGTCAGATCAGGCTGATCCGACGGATCAAAAATATTCACCTCACCCTTGATAACGCTCCCTGT
GTTCGTGACTGCTGCAGAGA

Product: DNA topoisomerase type IA zn finger domain-containing protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MSETMKKLRPSGGYRDTASFQTATLIYDATYWFCEKFMDSRSRTVDQMVQASRSGRQNIAEGSSAAATSSQTELRLINVA
RASLEELLLDYEDFLRHRRLTQWTPDCPEARAVRDVPKRFRQTQPDQADPSDLTSLTDQQRWALYAHWIEHDDPALRANT
LICLINQANYLLDRQIATLEIAFVEGGGYSEQLAAARLVERQRHASDQSDQRDPTDHIPPCPQCGKPMVLRTAQAGKNAG
RQFWGCTAYPDCRGVVNV

Sequences:

>Translated_258_residues
MSETMKKLRPSGGYRDTASFQTATLIYDATYWFCEKFMDSRSRTVDQMVQASRSGRQNIAEGSSAAATSSQTELRLINVA
RASLEELLLDYEDFLRHRRLTQWTPDCPEARAVRDVPKRFRQTQPDQADPSDLTSLTDQQRWALYAHWIEHDDPALRANT
LICLINQANYLLDRQIATLEIAFVEGGGYSEQLAAARLVERQRHASDQSDQRDPTDHIPPCPQCGKPMVLRTAQAGKNAG
RQFWGCTAYPDCRGVVNV
>Mature_257_residues
SETMKKLRPSGGYRDTASFQTATLIYDATYWFCEKFMDSRSRTVDQMVQASRSGRQNIAEGSSAAATSSQTELRLINVAR
ASLEELLLDYEDFLRHRRLTQWTPDCPEARAVRDVPKRFRQTQPDQADPSDLTSLTDQQRWALYAHWIEHDDPALRANTL
ICLINQANYLLDRQIATLEIAFVEGGGYSEQLAAARLVERQRHASDQSDQRDPTDHIPPCPQCGKPMVLRTAQAGKNAGR
QFWGCTAYPDCRGVVNV

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29200; Mature: 29069

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETMKKLRPSGGYRDTASFQTATLIYDATYWFCEKFMDSRSRTVDQMVQASRSGRQNIA
CCHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGSSAAATSSQTELRLINVARASLEELLLDYEDFLRHRRLTQWTPDCPEARAVRDVPKRF
CCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
RQTQPDQADPSDLTSLTDQQRWALYAHWIEHDDPALRANTLICLINQANYLLDRQIATLE
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCEEEEEECCCCHHHHCCEEEEE
IAFVEGGGYSEQLAAARLVERQRHASDQSDQRDPTDHIPPCPQCGKPMVLRTAQAGKNAG
EEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCC
RQFWGCTAYPDCRGVVNV
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SETMKKLRPSGGYRDTASFQTATLIYDATYWFCEKFMDSRSRTVDQMVQASRSGRQNIA
CHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGSSAAATSSQTELRLINVARASLEELLLDYEDFLRHRRLTQWTPDCPEARAVRDVPKRF
CCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
RQTQPDQADPSDLTSLTDQQRWALYAHWIEHDDPALRANTLICLINQANYLLDRQIATLE
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCEEEEEECCCCHHHHCCEEEEE
IAFVEGGGYSEQLAAARLVERQRHASDQSDQRDPTDHIPPCPQCGKPMVLRTAQAGKNAG
EEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCC
RQFWGCTAYPDCRGVVNV
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA