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The map label for this gene is 189499051

Identifier: 189499051

GI number: 189499051

Start: 53645

End: 55210

Strand: Direct

Name: 189499051

Synonym: Cphamn1_0052

Alternate gene names: NA

Gene position: 53645-55210 (Clockwise)

Preceding gene: 189499049

Following gene: 189499052

Centisome position: 1.96

GC content: 54.15

Gene sequence:

>1566_bases
ATGGCAAACAAACCATTGGATATGTTACAACAAATTCGAAGATGTCTCGTTCTCTTACAGGAAGCCCGTTCAGTCCGGCA
AATCCACCGGCTGACAGGCATCCACCGCAACACGGTCAAAAGCTACGTGGAGCGGTTCAAGCACAGCGGCAAAACCTATG
CCGAGCTTCTTGCGCTGCCAGACCATGACCTGGCTGAGCTGATCTACCCGCCACGCCACAACCATCAGGCTGACGACCGT
TACCTCTATCTCTCAGGGCGATTACAGCACTATGCCGATGAACTGAAGCGCCCTCATGTCACCAGGCAGCGTCTTTGGGA
AGAATACCTGGAACAACAACCCCATGGGTATCGCTATGCGCAATTCTGCCTGCACCTTGACCGCTATATCCAGCAGCATG
AACCGACCATGCCGCAAGTCCATCATCCCGGCGACAAGCTGCAAATCGACTTTGCCGGCGACCCGTTACGGTATTATGAC
CCGGTCGCGCATGAATGGATTAACTGCCCGGTCCTGGTCTGCTCCCTGCCCTGCAGCGCGATGTTCTACGCTGAGCCTTT
GACGTCAAGCCGACAGGAGCACCTGATCCCGGCTCTCAATAGCGCATTGGCATACTTTGGCGGCGTTCCCCGCAACATCC
TCAGCGATAATATGGCGCAGGTCGTCACCAAGCCATCGCGTTACGAGCCGGTCTTTACGGAACTGGTCGAGCAGTGGGCC
TTGCACTACCGGACCAATATGCAGGCAACGCGGGTTGCCAAACCAAAGGATAAGGCGTCGGTGGAAAACAGTGTTCATAT
TGCCTACCAGCAGATCTATGCTGCCATGCGCAACGAATGCCATCACTCGCTCAAAGCCTTGAAGCACCGTGTCAGGGAGT
TGCTGGAAAAAGCCAACGAACGAACCATGACGGCATATGGCAAGAGCCGCAAGGAACGCTTTCTGGAGCTGGAAAAGGAG
CATCTGGCTCCCTTACCGCCAAAGCACTTTGTCTACAAACATCAGGCGAAAGCCAAGGTCAAGAAGAACTACCATGTCAT
TCTCGGTGAAGACTGGCATCAGTACAGTGTACCGCACGCGTATATCGGTCAGCGGGTGAAGCTGATCTATGATGACGATG
TGGTCGAGATCTTCTGTGAGTACAAGCGCATCGCCGTCCATCAGCGTGCGTTTGTCCGCAACGGCTACAGTACCATCAAA
GAACACATGCCGGAGTCTCACCGCAACTACCTCCTGCAGAAGGGATGGACGCCGGATGACTTCCTGGAAAAAGCCCATGA
GATCGGTCCGGGCACCGAGGAAGTCGTCACCCGTTTTCTTGCAGCCAAGGCTTTCCCGGAACAGTCCTATGATGCCTGTA
TCGGGCTGCTGCGACTGGCCAAAGGATTTGGCAGGAAACGGCTTGAAAACGCCTGCTCACTGGCGTTGCAAGGATCACGT
GTCACGTATCGTATCGTGAAAACAATCCTGGAAAACAACCGTGACAAGCTGGTGCTTCCGACAGAAGAACAAGCGCCGAT
GCTGCCGTTCCATGAAAATATCCGAGGGAAGCATTTCTACAACTAA

Upstream 100 bases:

>100_bases
CAATGTGTACCAGGCATTCCGGAGCATAGTGTACCACCCGTACTGGGCGGATTTGTAACATCAATACCTGTACCTTTGGC
ATCAAAAACCGGAGGTGCAG

Downstream 100 bases:

>100_bases
CCCATAGCTATCAGACAATGAACACACAACTTACTTTAGACCAGCTTCGCCGCATGAGGCTTCACGGAATGGCAGAGGCC
TATGATGCCCTGCTTACTCT

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 521; Mature: 520

Protein sequence:

>521_residues
MANKPLDMLQQIRRCLVLLQEARSVRQIHRLTGIHRNTVKSYVERFKHSGKTYAELLALPDHDLAELIYPPRHNHQADDR
YLYLSGRLQHYADELKRPHVTRQRLWEEYLEQQPHGYRYAQFCLHLDRYIQQHEPTMPQVHHPGDKLQIDFAGDPLRYYD
PVAHEWINCPVLVCSLPCSAMFYAEPLTSSRQEHLIPALNSALAYFGGVPRNILSDNMAQVVTKPSRYEPVFTELVEQWA
LHYRTNMQATRVAKPKDKASVENSVHIAYQQIYAAMRNECHHSLKALKHRVRELLEKANERTMTAYGKSRKERFLELEKE
HLAPLPPKHFVYKHQAKAKVKKNYHVILGEDWHQYSVPHAYIGQRVKLIYDDDVVEIFCEYKRIAVHQRAFVRNGYSTIK
EHMPESHRNYLLQKGWTPDDFLEKAHEIGPGTEEVVTRFLAAKAFPEQSYDACIGLLRLAKGFGRKRLENACSLALQGSR
VTYRIVKTILENNRDKLVLPTEEQAPMLPFHENIRGKHFYN

Sequences:

>Translated_521_residues
MANKPLDMLQQIRRCLVLLQEARSVRQIHRLTGIHRNTVKSYVERFKHSGKTYAELLALPDHDLAELIYPPRHNHQADDR
YLYLSGRLQHYADELKRPHVTRQRLWEEYLEQQPHGYRYAQFCLHLDRYIQQHEPTMPQVHHPGDKLQIDFAGDPLRYYD
PVAHEWINCPVLVCSLPCSAMFYAEPLTSSRQEHLIPALNSALAYFGGVPRNILSDNMAQVVTKPSRYEPVFTELVEQWA
LHYRTNMQATRVAKPKDKASVENSVHIAYQQIYAAMRNECHHSLKALKHRVRELLEKANERTMTAYGKSRKERFLELEKE
HLAPLPPKHFVYKHQAKAKVKKNYHVILGEDWHQYSVPHAYIGQRVKLIYDDDVVEIFCEYKRIAVHQRAFVRNGYSTIK
EHMPESHRNYLLQKGWTPDDFLEKAHEIGPGTEEVVTRFLAAKAFPEQSYDACIGLLRLAKGFGRKRLENACSLALQGSR
VTYRIVKTILENNRDKLVLPTEEQAPMLPFHENIRGKHFYN
>Mature_520_residues
ANKPLDMLQQIRRCLVLLQEARSVRQIHRLTGIHRNTVKSYVERFKHSGKTYAELLALPDHDLAELIYPPRHNHQADDRY
LYLSGRLQHYADELKRPHVTRQRLWEEYLEQQPHGYRYAQFCLHLDRYIQQHEPTMPQVHHPGDKLQIDFAGDPLRYYDP
VAHEWINCPVLVCSLPCSAMFYAEPLTSSRQEHLIPALNSALAYFGGVPRNILSDNMAQVVTKPSRYEPVFTELVEQWAL
HYRTNMQATRVAKPKDKASVENSVHIAYQQIYAAMRNECHHSLKALKHRVRELLEKANERTMTAYGKSRKERFLELEKEH
LAPLPPKHFVYKHQAKAKVKKNYHVILGEDWHQYSVPHAYIGQRVKLIYDDDVVEIFCEYKRIAVHQRAFVRNGYSTIKE
HMPESHRNYLLQKGWTPDDFLEKAHEIGPGTEEVVTRFLAAKAFPEQSYDACIGLLRLAKGFGRKRLENACSLALQGSRV
TYRIVKTILENNRDKLVLPTEEQAPMLPFHENIRGKHFYN

Specific function: Unknown

COG id: COG4584

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR017895
- InterPro:   IPR001584
- InterPro:   IPR013249
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 61005; Mature: 60873

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANKPLDMLQQIRRCLVLLQEARSVRQIHRLTGIHRNTVKSYVERFKHSGKTYAELLALP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHCCC
DHDLAELIYPPRHNHQADDRYLYLSGRLQHYADELKRPHVTRQRLWEEYLEQQPHGYRYA
CCCHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHH
QFCLHLDRYIQQHEPTMPQVHHPGDKLQIDFAGDPLRYYDPVAHEWINCPVLVCSLPCSA
HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHCHHHHHHCCCCEEEECCCCHH
MFYAEPLTSSRQEHLIPALNSALAYFGGVPRNILSDNMAQVVTKPSRYEPVFTELVEQWA
HHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
LHYRTNMQATRVAKPKDKASVENSVHIAYQQIYAAMRNECHHSLKALKHRVRELLEKANE
HHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RTMTAYGKSRKERFLELEKEHLAPLPPKHFVYKHQAKAKVKKNYHVILGEDWHQYSVPHA
CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCHH
YIGQRVKLIYDDDVVEIFCEYKRIAVHQRAFVRNGYSTIKEHMPESHRNYLLQKGWTPDD
HHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHCCCCCHH
FLEKAHEIGPGTEEVVTRFLAAKAFPEQSYDACIGLLRLAKGFGRKRLENACSLALQGSR
HHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCH
VTYRIVKTILENNRDKLVLPTEEQAPMLPFHENIRGKHFYN
HHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHCCCCCCCCC
>Mature Secondary Structure 
ANKPLDMLQQIRRCLVLLQEARSVRQIHRLTGIHRNTVKSYVERFKHSGKTYAELLALP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHCCC
DHDLAELIYPPRHNHQADDRYLYLSGRLQHYADELKRPHVTRQRLWEEYLEQQPHGYRYA
CCCHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHH
QFCLHLDRYIQQHEPTMPQVHHPGDKLQIDFAGDPLRYYDPVAHEWINCPVLVCSLPCSA
HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHCHHHHHHCCCCEEEECCCCHH
MFYAEPLTSSRQEHLIPALNSALAYFGGVPRNILSDNMAQVVTKPSRYEPVFTELVEQWA
HHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
LHYRTNMQATRVAKPKDKASVENSVHIAYQQIYAAMRNECHHSLKALKHRVRELLEKANE
HHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RTMTAYGKSRKERFLELEKEHLAPLPPKHFVYKHQAKAKVKKNYHVILGEDWHQYSVPHA
CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCHH
YIGQRVKLIYDDDVVEIFCEYKRIAVHQRAFVRNGYSTIKEHMPESHRNYLLQKGWTPDD
HHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHCCCCCHH
FLEKAHEIGPGTEEVVTRFLAAKAFPEQSYDACIGLLRLAKGFGRKRLENACSLALQGSR
HHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCH
VTYRIVKTILENNRDKLVLPTEEQAPMLPFHENIRGKHFYN
HHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]