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The map label for this gene is 189499049

Identifier: 189499049

GI number: 189499049

Start: 52230

End: 52928

Strand: Direct

Name: 189499049

Synonym: Cphamn1_0050

Alternate gene names: NA

Gene position: 52230-52928 (Clockwise)

Preceding gene: 189499048

Following gene: 189499051

Centisome position: 1.91

GC content: 36.19

Gene sequence:

>699_bases
ATGGCTTTTCTGTCAGACACTACTTATCTTTTTCAGGTGAGTGATTGGGTAATAGAAAATAAAGGACCAATTGTATTGCC
TCCAGGAAAAGCTACGTTTATTGATTCGTATCCGGGTATATTGAAATTTGTAAAGCTAAATAATCAAAATGTTTTTGAGG
ATTTCACTGTGCATTTTCCTAGTGAAAGAAAATATAGGTATAATGGTATGACTAAAGATCAGGTTGAGAGAATTGGTGAA
GAACAGCTGATAATTAGAACAATCGATCTTAAGCCTGGTATGTATGCGTGGGTTGAGTATTCTATAACGCTTGGAATGGG
GTTAATGACAGGAAAAGAGCAAAATCTTACTATGATAAAGGTTGACGAGGATGAAGAATACATAAAAAATGGGAGTGAAA
AAAGTACAGATAATAAATATGATTACCTGAGTTCGTACGATATTGTGGATGGTGAAAAGATATACGAATTGAATTGTGCG
GACTGTCATGCAGAAGGCGTACTTAATTCTCCCAGAGTTGGTGATATAGGCGAATGGGAGAATCGCATAAAGCAGGGAAT
ACTGGCAATGATAGATAAAACAATAAAAGGATATAAATCTGACGGTTATATGCCTGCAAAAGGCGGTGCTGTACATCTTA
GCAATGAGAGGTTTGCTAATGCAGTGGCATATATGGTTTATCAGAGCACTGAAAAATAA

Upstream 100 bases:

>100_bases
AAAAAGCCGGTAATGACTGAATTTTCTGTCTCTTTCCCGTATGGCATCGTTATCTTTGTGACTTATAATTGAATATAAGA
CTATATTTTATAATATTATA

Downstream 100 bases:

>100_bases
TAAGAAATGTAAAAAAGAACGTAGGGGCTGTCGTTTAATAAAAAAAGTACTGGATTTTCATCATACCTGTCACGGAAGTC
AGTGGTCGTCTCTTCCGATC

Product: cytochrome c class I

Products: NA

Alternate protein names: Cytochrome c555 [H]

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MAFLSDTTYLFQVSDWVIENKGPIVLPPGKATFIDSYPGILKFVKLNNQNVFEDFTVHFPSERKYRYNGMTKDQVERIGE
EQLIIRTIDLKPGMYAWVEYSITLGMGLMTGKEQNLTMIKVDEDEEYIKNGSEKSTDNKYDYLSSYDIVDGEKIYELNCA
DCHAEGVLNSPRVGDIGEWENRIKQGILAMIDKTIKGYKSDGYMPAKGGAVHLSNERFANAVAYMVYQSTEK

Sequences:

>Translated_232_residues
MAFLSDTTYLFQVSDWVIENKGPIVLPPGKATFIDSYPGILKFVKLNNQNVFEDFTVHFPSERKYRYNGMTKDQVERIGE
EQLIIRTIDLKPGMYAWVEYSITLGMGLMTGKEQNLTMIKVDEDEEYIKNGSEKSTDNKYDYLSSYDIVDGEKIYELNCA
DCHAEGVLNSPRVGDIGEWENRIKQGILAMIDKTIKGYKSDGYMPAKGGAVHLSNERFANAVAYMVYQSTEK
>Mature_231_residues
AFLSDTTYLFQVSDWVIENKGPIVLPPGKATFIDSYPGILKFVKLNNQNVFEDFTVHFPSERKYRYNGMTKDQVERIGEE
QLIIRTIDLKPGMYAWVEYSITLGMGLMTGKEQNLTMIKVDEDEEYIKNGSEKSTDNKYDYLSSYDIVDGEKIYELNCAD
CHAEGVLNSPRVGDIGEWENRIKQGILAMIDKTIKGYKSDGYMPAKGGAVHLSNERFANAVAYMVYQSTEK

Specific function: This basic c-type monoheme cytochrome has been found exclusively in the green photosynthetic bacteria, although its role in bacterial photosynthesis is not established. It has an unusually low redox potential compared with mitochondrial cytochrome c. It i

COG id: COG3245

COG function: function code C; Cytochrome c5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR002323 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 26413; Mature: 26282

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFLSDTTYLFQVSDWVIENKGPIVLPPGKATFIDSYPGILKFVKLNNQNVFEDFTVHFP
CCEECCCEEEEEEEEEEEECCCCEEECCCCEEEECCCCCEEEEEEECCCCCCCEEEEECC
SERKYRYNGMTKDQVERIGEEQLIIRTIDLKPGMYAWVEYSITLGMGLMTGKEQNLTMIK
CCCCEEECCCCHHHHHHCCCCEEEEEEEECCCCEEEEEEEEEEECEEEECCCCCCEEEEE
VDEDEEYIKNGSEKSTDNKYDYLSSYDIVDGEKIYELNCADCHAEGVLNSPRVGDIGEWE
ECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHH
NRIKQGILAMIDKTIKGYKSDGYMPAKGGAVHLSNERFANAVAYMVYQSTEK
HHHHHHHHHHHHHHHHCCCCCCEECCCCCEEEECCHHHHHHHEEEEEECCCC
>Mature Secondary Structure 
AFLSDTTYLFQVSDWVIENKGPIVLPPGKATFIDSYPGILKFVKLNNQNVFEDFTVHFP
CEECCCEEEEEEEEEEEECCCCEEECCCCEEEECCCCCEEEEEEECCCCCCCEEEEECC
SERKYRYNGMTKDQVERIGEEQLIIRTIDLKPGMYAWVEYSITLGMGLMTGKEQNLTMIK
CCCCEEECCCCHHHHHHCCCCEEEEEEEECCCCEEEEEEEEEEECEEEECCCCCCEEEEE
VDEDEEYIKNGSEKSTDNKYDYLSSYDIVDGEKIYELNCADCHAEGVLNSPRVGDIGEWE
ECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHH
NRIKQGILAMIDKTIKGYKSDGYMPAKGGAVHLSNERFANAVAYMVYQSTEK
HHHHHHHHHHHHHHHHCCCCCCEECCCCCEEEECCHHHHHHHEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]