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The map label for this gene is atpD

Identifier: 189499031

GI number: 189499031

Start: 35443

End: 36831

Strand: Reverse

Name: atpD

Synonym: Cphamn1_0031

Alternate gene names: 189499031

Gene position: 36831-35443 (Counterclockwise)

Preceding gene: 189499035

Following gene: 189499030

Centisome position: 1.35

GC content: 50.11

Gene sequence:

>1389_bases
ATGCAAGAAGGTAAGATATCTCAAATCATCGGTCCTGTCGTTGACGTTGATTTCCAGGAAGGAGGCCTACCGGCAATTCT
CGACGCGCTGACCGTCGCTCGTCCGGACGGAACCAAACTTGTTCTTGAAACCCAGCAGCATCTTGGAGAAGAACGTGTGC
GAACCATTTCCATGGACGCGACAGATGGCCTTGTACGGGGAATGCCCGTCATAAACACAGGGAAACCTATTCAGGTTCCT
GTCGGCCCGAACGTACTTGGAAGAATGCTGAACGTCGTAGGTGATCCTATCGATGGAAAAGGGCCTGTCAAGAGCGAGAA
ATCATATTCGATTCACAGACCCACTCCGAAGTTTGACGTCCTGTCAACAAAATCTGAAATGTTTGAGACAGGAATCAAAG
TCATCGACCTTCTGGAGCCGTATTCACGTGGCGGAAAAACCGGTTTGTTTGGTGGTGCCGGTGTCGGCAAGACCGTGCTG
ATCATGGAGCTTATCAATAATATTGCGAAACAGCAATCAGGTTTCAGTGTCTTCGCCGGTGTTGGTGAACGCACAAGAGA
AGGCAACGATCTCTGGGAAGAGATGAAAGAGTCCGGAGTTATCGACAAAACAGCGCTTGTGTTCGGACAGATGAACGAAC
CTCCCGGAGCTCGCGCGCGTGTTGCCCTTACCGGTCTGAGTATCGCGGAATACTTCCGTGACGAAGAGAATCGTGACGTG
CTGCTCTTTATCGACAACATTTTCCGTTTCACCCAGGCAGGTTCGGAGGTATCAGCGCTTCTCGGACGAATGCCGAGTGC
TGTTGGATATCAGCCAACACTTGGCACGGAGATGGGTGAACTGCAGGACAGAATTGTATCGACAAACAAAGGCTCGGTAA
CCTCTGTTCAGGCTATTTACGTCCCTGCAGATGACCTTACCGATCCGGCACCGGCAACAGCGTTTACTCACCTCGATGCA
ACAACGGTTCTCTCCCGTTCTATCGCTGAGCTCGGCATCTATCCTGCTGTCGATCCTCTCGACTCAACATCACGAATCCT
TGATCCTAATATTGTCGGTGACGAACACTACAACACGGCTCAGGCAGTTAAATCTCTCCTGCAGCGCTACAAGGATCTTC
AGGATATCATCGCCATTCTCGGTATGGACGAATTGAGCGACGAGGATAAGCTGACCGTCTCCAGAGCCAGAAAGATTCAG
CGCTTCCTTTCACAGCCGTTCTTCGTGGCCGAAGCGTTTACAGGCCTTGAAGGTAAATACGTGAAGCTCGAAGATACCAT
TAAGGGATTCAATGAAATCATTGACGGAAAGCATGACGATCTGCCTGAAAGTGCGTTTTACCTTGTCGGAACAATCGAAG
AAGCAGTAGAGAAAGCAAAAACCCTGTAA

Upstream 100 bases:

>100_bases
GCTCTAACCTGAAAAAAACAACAGGGCCATCCGGAAAAATCCGGGCCCTGACGTATAAGTTGTCATCGCAATACAATACA
ATCCTATCAACACTGTGAAT

Downstream 100 bases:

>100_bases
ATCATCAGAGTATCATGGCCGGTGCCGATAAAACCTTTGACATTGAAATTGTCACACCGCAAGCACAGTTTTTTGCGGGA
GAAGTCACAAGCATTCTGGC

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MQEGKISQIIGPVVDVDFQEGGLPAILDALTVARPDGTKLVLETQQHLGEERVRTISMDATDGLVRGMPVINTGKPIQVP
VGPNVLGRMLNVVGDPIDGKGPVKSEKSYSIHRPTPKFDVLSTKSEMFETGIKVIDLLEPYSRGGKTGLFGGAGVGKTVL
IMELINNIAKQQSGFSVFAGVGERTREGNDLWEEMKESGVIDKTALVFGQMNEPPGARARVALTGLSIAEYFRDEENRDV
LLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLGTEMGELQDRIVSTNKGSVTSVQAIYVPADDLTDPAPATAFTHLDA
TTVLSRSIAELGIYPAVDPLDSTSRILDPNIVGDEHYNTAQAVKSLLQRYKDLQDIIAILGMDELSDEDKLTVSRARKIQ
RFLSQPFFVAEAFTGLEGKYVKLEDTIKGFNEIIDGKHDDLPESAFYLVGTIEEAVEKAKTL

Sequences:

>Translated_462_residues
MQEGKISQIIGPVVDVDFQEGGLPAILDALTVARPDGTKLVLETQQHLGEERVRTISMDATDGLVRGMPVINTGKPIQVP
VGPNVLGRMLNVVGDPIDGKGPVKSEKSYSIHRPTPKFDVLSTKSEMFETGIKVIDLLEPYSRGGKTGLFGGAGVGKTVL
IMELINNIAKQQSGFSVFAGVGERTREGNDLWEEMKESGVIDKTALVFGQMNEPPGARARVALTGLSIAEYFRDEENRDV
LLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLGTEMGELQDRIVSTNKGSVTSVQAIYVPADDLTDPAPATAFTHLDA
TTVLSRSIAELGIYPAVDPLDSTSRILDPNIVGDEHYNTAQAVKSLLQRYKDLQDIIAILGMDELSDEDKLTVSRARKIQ
RFLSQPFFVAEAFTGLEGKYVKLEDTIKGFNEIIDGKHDDLPESAFYLVGTIEEAVEKAKTL
>Mature_462_residues
MQEGKISQIIGPVVDVDFQEGGLPAILDALTVARPDGTKLVLETQQHLGEERVRTISMDATDGLVRGMPVINTGKPIQVP
VGPNVLGRMLNVVGDPIDGKGPVKSEKSYSIHRPTPKFDVLSTKSEMFETGIKVIDLLEPYSRGGKTGLFGGAGVGKTVL
IMELINNIAKQQSGFSVFAGVGERTREGNDLWEEMKESGVIDKTALVFGQMNEPPGARARVALTGLSIAEYFRDEENRDV
LLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLGTEMGELQDRIVSTNKGSVTSVQAIYVPADDLTDPAPATAFTHLDA
TTVLSRSIAELGIYPAVDPLDSTSRILDPNIVGDEHYNTAQAVKSLLQRYKDLQDIIAILGMDELSDEDKLTVSRARKIQ
RFLSQPFFVAEAFTGLEGKYVKLEDTIKGFNEIIDGKHDDLPESAFYLVGTIEEAVEKAKTL

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=465, Percent_Identity=71.3978494623656, Blast_Score=671, Evalue=0.0,
Organism=Homo sapiens, GI19913428, Length=422, Percent_Identity=24.4075829383886, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI19913424, Length=301, Percent_Identity=28.9036544850498, Blast_Score=114, Evalue=3e-25,
Organism=Homo sapiens, GI19913426, Length=433, Percent_Identity=24.2494226327945, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI50345984, Length=298, Percent_Identity=26.1744966442953, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI4757810, Length=298, Percent_Identity=26.1744966442953, Blast_Score=98, Evalue=1e-20,
Organism=Escherichia coli, GI1790170, Length=462, Percent_Identity=67.7489177489177, Blast_Score=636, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=412, Percent_Identity=28.8834951456311, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1790172, Length=316, Percent_Identity=26.5822784810127, Blast_Score=114, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI25144756, Length=465, Percent_Identity=68.3870967741936, Blast_Score=649, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17570191, Length=425, Percent_Identity=24.7058823529412, Blast_Score=119, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17510931, Length=353, Percent_Identity=25.2124645892351, Blast_Score=117, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17565854, Length=319, Percent_Identity=28.2131661442006, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI71988080, Length=298, Percent_Identity=25.503355704698, Blast_Score=101, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI71988063, Length=298, Percent_Identity=25.503355704698, Blast_Score=101, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI71988074, Length=266, Percent_Identity=24.0601503759398, Blast_Score=85, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6322581, Length=458, Percent_Identity=70.7423580786026, Blast_Score=660, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=424, Percent_Identity=25.7075471698113, Blast_Score=120, Evalue=7e-28,
Organism=Saccharomyces cerevisiae, GI6319370, Length=365, Percent_Identity=26.027397260274, Blast_Score=107, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6320016, Length=251, Percent_Identity=27.4900398406374, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24638766, Length=465, Percent_Identity=70.752688172043, Blast_Score=662, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=467, Percent_Identity=67.6659528907923, Blast_Score=627, Evalue=1e-180,
Organism=Drosophila melanogaster, GI20129479, Length=335, Percent_Identity=28.955223880597, Blast_Score=119, Evalue=5e-27,
Organism=Drosophila melanogaster, GI24583992, Length=322, Percent_Identity=27.9503105590062, Blast_Score=118, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24583988, Length=350, Percent_Identity=26, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24583986, Length=350, Percent_Identity=26, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24583984, Length=350, Percent_Identity=26, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI281361666, Length=421, Percent_Identity=23.9904988123515, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24646341, Length=421, Percent_Identity=23.9904988123515, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI17136796, Length=421, Percent_Identity=23.9904988123515, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=56.5217391304348, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24658560, Length=298, Percent_Identity=25.8389261744966, Blast_Score=96, Evalue=6e-20,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): ATPB_CHLPB (B3EJK9)

Other databases:

- EMBL:   CP001101
- RefSeq:   YP_001958501.1
- ProteinModelPortal:   B3EJK9
- SMR:   B3EJK9
- GeneID:   6373673
- GenomeReviews:   CP001101_GR
- KEGG:   cpb:Cphamn1_0031
- HOGENOM:   HBG565875
- OMA:   IGQEHYD
- ProtClustDB:   PRK09280
- HAMAP:   MF_01347
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100
- PANTHER:   PTHR15184:SF8
- SMART:   SM00382
- TIGRFAMs:   TIGR01039

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N; SSF47917 ATPase_a/b_C; SSF50615 ATPase_a/b_N

EC number: =3.6.3.14

Molecular weight: Translated: 50187; Mature: 50187

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEGKISQIIGPVVDVDFQEGGLPAILDALTVARPDGTKLVLETQQHLGEERVRTISMDA
CCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEHHHHHCCHHHHEEEECCC
TDGLVRGMPVINTGKPIQVPVGPNVLGRMLNVVGDPIDGKGPVKSEKSYSIHRPTPKFDV
CCHHHHCCCEECCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCHH
LSTKSEMFETGIKVIDLLEPYSRGGKTGLFGGAGVGKTVLIMELINNIAKQQSGFSVFAG
HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEC
VGERTREGNDLWEEMKESGVIDKTALVFGQMNEPPGARARVALTGLSIAEYFRDEENRDV
CCCCCCCCHHHHHHHHHCCCCCHHHHHEECCCCCCCCCEEEEEEHHHHHHHHCCCCCCEE
LLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLGTEMGELQDRIVSTNKGSVTSVQAIY
EEEHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEE
VPADDLTDPAPATAFTHLDATTVLSRSIAELGIYPAVDPLDSTSRILDPNIVGDEHYNTA
ECCCCCCCCCCCHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCHH
QAVKSLLQRYKDLQDIIAILGMDELSDEDKLTVSRARKIQRFLSQPFFVAEAFTGLEGKY
HHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCE
VKLEDTIKGFNEIIDGKHDDLPESAFYLVGTIEEAVEKAKTL
EEHHHHHHHHHHHHCCCCCCCCCCHHEEEHHHHHHHHHHHCC
>Mature Secondary Structure
MQEGKISQIIGPVVDVDFQEGGLPAILDALTVARPDGTKLVLETQQHLGEERVRTISMDA
CCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEHHHHHCCHHHHEEEECCC
TDGLVRGMPVINTGKPIQVPVGPNVLGRMLNVVGDPIDGKGPVKSEKSYSIHRPTPKFDV
CCHHHHCCCEECCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCHH
LSTKSEMFETGIKVIDLLEPYSRGGKTGLFGGAGVGKTVLIMELINNIAKQQSGFSVFAG
HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEC
VGERTREGNDLWEEMKESGVIDKTALVFGQMNEPPGARARVALTGLSIAEYFRDEENRDV
CCCCCCCCHHHHHHHHHCCCCCHHHHHEECCCCCCCCCEEEEEEHHHHHHHHCCCCCCEE
LLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLGTEMGELQDRIVSTNKGSVTSVQAIY
EEEHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEE
VPADDLTDPAPATAFTHLDATTVLSRSIAELGIYPAVDPLDSTSRILDPNIVGDEHYNTA
ECCCCCCCCCCCHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCHH
QAVKSLLQRYKDLQDIIAILGMDELSDEDKLTVSRARKIQRFLSQPFFVAEAFTGLEGKY
HHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCE
VKLEDTIKGFNEIIDGKHDDLPESAFYLVGTIEEAVEKAKTL
EEHHHHHHHHHHHHCCCCCCCCCCHHEEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA