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The map label for this gene is cefD [H]

Identifier: 189499027

GI number: 189499027

Start: 31718

End: 33085

Strand: Direct

Name: cefD [H]

Synonym: Cphamn1_0027

Alternate gene names: 189499027

Gene position: 31718-33085 (Clockwise)

Preceding gene: 189499026

Following gene: 189499032

Centisome position: 1.16

GC content: 51.61

Gene sequence:

>1368_bases
ATGTTTAATTTCTCATCTGGCGGTGACGAAGGAGTGTTCCTTCCGGAAAGAGAGGAGGCGTATTTTTCAGGGTTCGCCAG
AATGTTCAAAATCTCCAATATCGACAGATATTTTTTGCCAACGCAGAAAGGCTCGATGCCGATTCCCGTCCTGAAGAACT
ACAAGAAAGGCCTCGACAGGATCGCCAAAGATCCTCGCAGGGTATTTCTTGAAAAAACAGAGGTGACGAGAGAAAAAATT
GCCAAGGGCTACGGGGCAAGAGCAGATGAGATTGCCATATCCCGAAATACAACTGATGCGATCAGCCAGGTTCTCTACGG
AATTGACTGGCGCAGGGACGAAGAAATTCTCTGTTCAACGCTGGAGTATCCCAACTGTATCGCGACCATTCGTCGGGTAG
CCTGCCGGTTTGGTTTGACTATCCGGCAGTTTGGTGTTCCGTCCCGGCATGATACCCACGCAGAAGAGATCGTTGAGTCT
GCAAGGAGGGGGATCGTGCCCGGGAAGACAAAAGTGATGTTTTTTTCCGCTCCGGCTCAGCCTAACGGGATGATGCTCCC
GTTTCGCAGGCTCGCGCGACTTGCTCAGCACTATGGAATTATAACTGTTGTCGATGGGGCTCATTACGGAGGGATGTTCA
ATCCCCGGCTTGACGACACCGGAATAGATTTCTGGGGGATATCCGGTTATAAATGGCAGTGCGGTCCCGGAGGAACCGGA
ATTCTGTATGTTCGAAACGCTCTCCTTGAATCCAACAATACTCCTCTTCCCCGTTTCAATCTGGTTCGTTCGGCGGATCT
CCATGCACCTATCGATGGTTCAAGGCCTTTGGATTTCGATATCGGGGCAGCATTGAGTCACTACGGTTTTCCTGAATCAG
CTGACCTGCGAGCCCTTGGGGAGGCTTGCGAGATCTGGGACCGGGCCGGAAGGGCAAGAATCGAGCGGTATATTCTCTGG
CTTGCCGACTATGCTCGTGAGAAACTTGTCGCTGTTTTCGGAGAACACGCTCTTCTGCAGGCCTGCAAGGACGAAGAATT
GAAATCAGGCCTTGTCGCGTTCAACCCTTTTCCCGAGAAGGAGCAGCGACGGGATTTGCAACTGGCCCACAGGTTTAATG
CCCGTTTATCCAGGAAGTACGGATATCGTCTTGGCTATGGTGGTATTGGTCTCAATGGATTTACCCGGGACCCTGAGCCT
GATGCCGGGCGTTTTTACGAAGGATGCGTTCCTAATCGAAATGCGCTGACCAACGAGCCCGAGCCGGAGGATATTCCTTT
CAGGTTCGGTACGCCCGTATGGATAAACCGCAAGGATATTGACAGGTTCATAAAGGCGTGCAGAAAAACACTGGATAGCG
TGGCCTGA

Upstream 100 bases:

>100_bases
TTCCGAAAGGAGGATCATTCGGTCACGATAGTGTGCTGATTGCTGAAACTGCCGGCAGAACGGTTTGGGCCTGCGTACAA
ACGAAATTAACGGTAAAAGG

Downstream 100 bases:

>100_bases
CAGGATATGCTGCATATCCTTATTTCCCCTGCTCAAACGTGGCTTTTCTGGCGAAGGCGAGCGGTAGAATTCCTGCTTCC
TGCAGATGCGAAGGTACTGA

Product: class V aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
MFNFSSGGDEGVFLPEREEAYFSGFARMFKISNIDRYFLPTQKGSMPIPVLKNYKKGLDRIAKDPRRVFLEKTEVTREKI
AKGYGARADEIAISRNTTDAISQVLYGIDWRRDEEILCSTLEYPNCIATIRRVACRFGLTIRQFGVPSRHDTHAEEIVES
ARRGIVPGKTKVMFFSAPAQPNGMMLPFRRLARLAQHYGIITVVDGAHYGGMFNPRLDDTGIDFWGISGYKWQCGPGGTG
ILYVRNALLESNNTPLPRFNLVRSADLHAPIDGSRPLDFDIGAALSHYGFPESADLRALGEACEIWDRAGRARIERYILW
LADYAREKLVAVFGEHALLQACKDEELKSGLVAFNPFPEKEQRRDLQLAHRFNARLSRKYGYRLGYGGIGLNGFTRDPEP
DAGRFYEGCVPNRNALTNEPEPEDIPFRFGTPVWINRKDIDRFIKACRKTLDSVA

Sequences:

>Translated_455_residues
MFNFSSGGDEGVFLPEREEAYFSGFARMFKISNIDRYFLPTQKGSMPIPVLKNYKKGLDRIAKDPRRVFLEKTEVTREKI
AKGYGARADEIAISRNTTDAISQVLYGIDWRRDEEILCSTLEYPNCIATIRRVACRFGLTIRQFGVPSRHDTHAEEIVES
ARRGIVPGKTKVMFFSAPAQPNGMMLPFRRLARLAQHYGIITVVDGAHYGGMFNPRLDDTGIDFWGISGYKWQCGPGGTG
ILYVRNALLESNNTPLPRFNLVRSADLHAPIDGSRPLDFDIGAALSHYGFPESADLRALGEACEIWDRAGRARIERYILW
LADYAREKLVAVFGEHALLQACKDEELKSGLVAFNPFPEKEQRRDLQLAHRFNARLSRKYGYRLGYGGIGLNGFTRDPEP
DAGRFYEGCVPNRNALTNEPEPEDIPFRFGTPVWINRKDIDRFIKACRKTLDSVA
>Mature_455_residues
MFNFSSGGDEGVFLPEREEAYFSGFARMFKISNIDRYFLPTQKGSMPIPVLKNYKKGLDRIAKDPRRVFLEKTEVTREKI
AKGYGARADEIAISRNTTDAISQVLYGIDWRRDEEILCSTLEYPNCIATIRRVACRFGLTIRQFGVPSRHDTHAEEIVES
ARRGIVPGKTKVMFFSAPAQPNGMMLPFRRLARLAQHYGIITVVDGAHYGGMFNPRLDDTGIDFWGISGYKWQCGPGGTG
ILYVRNALLESNNTPLPRFNLVRSADLHAPIDGSRPLDFDIGAALSHYGFPESADLRALGEACEIWDRAGRARIERYILW
LADYAREKLVAVFGEHALLQACKDEELKSGLVAFNPFPEKEQRRDLQLAHRFNARLSRKYGYRLGYGGIGLNGFTRDPEP
DAGRFYEGCVPNRNALTNEPEPEDIPFRFGTPVWINRKDIDRFIKACRKTLDSVA

Specific function: Catalyzes the reversible isomerization between isopenicillin N and penicillin N [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR020578
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =5.1.1.17 [H]

Molecular weight: Translated: 51478; Mature: 51478

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNFSSGGDEGVFLPEREEAYFSGFARMFKISNIDRYFLPTQKGSMPIPVLKNYKKGLDR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHH
IAKDPRRVFLEKTEVTREKIAKGYGARADEIAISRNTTDAISQVLYGIDWRRDEEILCST
HHCCHHHHHHHHHHHHHHHHHHCCCCCCHHEEEECCCHHHHHHHHHCCCCCCCHHHHHHH
LEYPNCIATIRRVACRFGLTIRQFGVPSRHDTHAEEIVESARRGIVPGKTKVMFFSAPAQ
CCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCC
PNGMMLPFRRLARLAQHYGIITVVDGAHYGGMFNPRLDDTGIDFWGISGYKWQCGPGGTG
CCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCEEEECCCCCCC
ILYVRNALLESNNTPLPRFNLVRSADLHAPIDGSRPLDFDIGAALSHYGFPESADLRALG
HHHHHHHHHHCCCCCCCCHHHEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHH
EACEIWDRAGRARIERYILWLADYAREKLVAVFGEHALLQACKDEELKSGLVAFNPFPEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCH
EQRRDLQLAHRFNARLSRKYGYRLGYGGIGLNGFTRDPEPDAGRFYEGCVPNRNALTNEP
HHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCC
EPEDIPFRFGTPVWINRKDIDRFIKACRKTLDSVA
CCCCCCEECCCCEEECHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFNFSSGGDEGVFLPEREEAYFSGFARMFKISNIDRYFLPTQKGSMPIPVLKNYKKGLDR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHH
IAKDPRRVFLEKTEVTREKIAKGYGARADEIAISRNTTDAISQVLYGIDWRRDEEILCST
HHCCHHHHHHHHHHHHHHHHHHCCCCCCHHEEEECCCHHHHHHHHHCCCCCCCHHHHHHH
LEYPNCIATIRRVACRFGLTIRQFGVPSRHDTHAEEIVESARRGIVPGKTKVMFFSAPAQ
CCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCC
PNGMMLPFRRLARLAQHYGIITVVDGAHYGGMFNPRLDDTGIDFWGISGYKWQCGPGGTG
CCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCEEEECCCCCCC
ILYVRNALLESNNTPLPRFNLVRSADLHAPIDGSRPLDFDIGAALSHYGFPESADLRALG
HHHHHHHHHHCCCCCCCCHHHEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHH
EACEIWDRAGRARIERYILWLADYAREKLVAVFGEHALLQACKDEELKSGLVAFNPFPEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCH
EQRRDLQLAHRFNARLSRKYGYRLGYGGIGLNGFTRDPEPDAGRFYEGCVPNRNALTNEP
HHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCC
EPEDIPFRFGTPVWINRKDIDRFIKACRKTLDSVA
CCCCCCEECCCCEEECHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8437592 [H]