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The map label for this gene is yfgF [C]

Identifier: 189184714

GI number: 189184714

Start: 1836596

End: 1837828

Strand: Reverse

Name: yfgF [C]

Synonym: OTT_1807

Alternate gene names: 189184714

Gene position: 1837828-1836596 (Counterclockwise)

Preceding gene: 189184715

Following gene: 189184713

Centisome position: 91.48

GC content: 29.2

Gene sequence:

>1233_bases
ATGATGAGGCATAATTTTTGTTCTACTCGACCATGGTTAAAGGTTACTAATGTATTTGATGATTTTATAAAGCATGGTGG
TGGAGTTGTGCTATTAATTAAGATACAAAACTATAATAATTTGCTATTGATAGCAGCAAATAAAAGGTTAAAGCAAATAT
TCCAGAAGTTTAAACTAATTTTATCAACTATATGTAAAGTGTATGTAAGTAAACACTATGTGTTTCAGTGGGACTATTAT
TTCATCATTGTTTTTCCTAAAATTGATAAGAGTAAAGTTTCAACTATAGCATATGATATTTATTATAAATCACAAATGGT
TACTTTTGACAAGGATAAATTGTTTTTAAAATGTAAAATATCAAGTATAAAATTTCCAGAATATGGTACTAAGTTGTTAT
TATTGATAAAATATTTAAAGAGTTACTTGGATGATAGTAGTTTTTTAGGTTACTATTCAGAATTTAATTTTTTAGAATTT
ACAACAGGGCTGAAGAAAGAATTTGAGGCATTGGCTCTATTTAAAGAGGCTCAAATGAGTGAAAAGTTGTTTTTTGCTTA
TCAGCCTATAGTGGAGTCTAGAACTGGAAAAATATTATATTATGAGTGTTTATTGAGAATTCTAGATGCTGCCAATAAGT
TAACTTCTGCTGAGCCGTTTATCTTGTTGGCAGAAAAGAATGGTTTTATTAATGTTATTGATAAGATGGTTTTGCAGTTT
GCTATTAAAGAGTTAAGTTCTGTTCCAGATTTAACGCTTGCTATTAACATCTCAAATATAGGAGTATTAGATTCTAGTTT
GATAGCAATGGCTGATGAATTGCTATCATCGTATCCAGTAGCAGATAGATTAACTATAGAAATTACTGAAACTGCTTTTA
ATAATGATGTAATTAAAACTATAGAATTTATTGAAGCAATGCATAATAAAGGTTGTCAAGTTGCAATTGATGATTTTGGA
GCAGGCTTTTTTTCGTTTAAGCACTTGCAGATGTTGCAAGTAGATATAATTAAGATTGGTGGTTGCTTTATACGAGATAT
TAATGATAATTATTATAATAAATCTATAGTTAAAACCTTAGTAGAAACAGCAGCAGGACGGGGAATAGAAACCGTGGCTG
AATTTGTTGAAAATGGACAGATTGCAAAAATTTTAATGGATATTAATGTGAATTATATGCAAGGTAACTTCTTTGCTCCT
GCGATGCATTATAAGCCTTGGAATAGTGGATAA

Upstream 100 bases:

>100_bases
ATACTACAAAGTAGTTGATTATTTATCAGTGATAGTTTTTAAACATAGTATACTGTTATTTAGATTTTTTTATTATAAAT
TTTGTTAATTGAGTTGAAAG

Downstream 100 bases:

>100_bases
TAACTTCTATGCATATATTAAAATGGTGAGCCTGCCGGGATTCGAACCCGGGACACCTTGATTAAAAGTCAAGTGCTCTA
CCAGCTGAGCTACAGGCTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MMRHNFCSTRPWLKVTNVFDDFIKHGGGVVLLIKIQNYNNLLLIAANKRLKQIFQKFKLILSTICKVYVSKHYVFQWDYY
FIIVFPKIDKSKVSTIAYDIYYKSQMVTFDKDKLFLKCKISSIKFPEYGTKLLLLIKYLKSYLDDSSFLGYYSEFNFLEF
TTGLKKEFEALALFKEAQMSEKLFFAYQPIVESRTGKILYYECLLRILDAANKLTSAEPFILLAEKNGFINVIDKMVLQF
AIKELSSVPDLTLAINISNIGVLDSSLIAMADELLSSYPVADRLTIEITETAFNNDVIKTIEFIEAMHNKGCQVAIDDFG
AGFFSFKHLQMLQVDIIKIGGCFIRDINDNYYNKSIVKTLVETAAGRGIETVAEFVENGQIAKILMDINVNYMQGNFFAP
AMHYKPWNSG

Sequences:

>Translated_410_residues
MMRHNFCSTRPWLKVTNVFDDFIKHGGGVVLLIKIQNYNNLLLIAANKRLKQIFQKFKLILSTICKVYVSKHYVFQWDYY
FIIVFPKIDKSKVSTIAYDIYYKSQMVTFDKDKLFLKCKISSIKFPEYGTKLLLLIKYLKSYLDDSSFLGYYSEFNFLEF
TTGLKKEFEALALFKEAQMSEKLFFAYQPIVESRTGKILYYECLLRILDAANKLTSAEPFILLAEKNGFINVIDKMVLQF
AIKELSSVPDLTLAINISNIGVLDSSLIAMADELLSSYPVADRLTIEITETAFNNDVIKTIEFIEAMHNKGCQVAIDDFG
AGFFSFKHLQMLQVDIIKIGGCFIRDINDNYYNKSIVKTLVETAAGRGIETVAEFVENGQIAKILMDINVNYMQGNFFAP
AMHYKPWNSG
>Mature_410_residues
MMRHNFCSTRPWLKVTNVFDDFIKHGGGVVLLIKIQNYNNLLLIAANKRLKQIFQKFKLILSTICKVYVSKHYVFQWDYY
FIIVFPKIDKSKVSTIAYDIYYKSQMVTFDKDKLFLKCKISSIKFPEYGTKLLLLIKYLKSYLDDSSFLGYYSEFNFLEF
TTGLKKEFEALALFKEAQMSEKLFFAYQPIVESRTGKILYYECLLRILDAANKLTSAEPFILLAEKNGFINVIDKMVLQF
AIKELSSVPDLTLAINISNIGVLDSSLIAMADELLSSYPVADRLTIEITETAFNNDVIKTIEFIEAMHNKGCQVAIDDFG
AGFFSFKHLQMLQVDIIKIGGCFIRDINDNYYNKSIVKTLVETAAGRGIETVAEFVENGQIAKILMDINVNYMQGNFFAP
AMHYKPWNSG

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1788849, Length=237, Percent_Identity=31.2236286919831, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1790496, Length=234, Percent_Identity=33.7606837606838, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787541, Length=312, Percent_Identity=25.6410256410256, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082096, Length=200, Percent_Identity=29.5, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787055, Length=240, Percent_Identity=29.5833333333333, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI87081743, Length=221, Percent_Identity=27.1493212669683, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI226510982, Length=309, Percent_Identity=25.2427184466019, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081980, Length=232, Percent_Identity=27.5862068965517, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788502, Length=228, Percent_Identity=26.7543859649123, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI87081921, Length=253, Percent_Identity=28.0632411067194, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1786507, Length=226, Percent_Identity=26.9911504424779, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081845, Length=226, Percent_Identity=26.5486725663717, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1789650, Length=219, Percent_Identity=24.2009132420091, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1787410, Length=278, Percent_Identity=21.9424460431655, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 47053; Mature: 47053

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRHNFCSTRPWLKVTNVFDDFIKHGGGVVLLIKIQNYNNLLLIAANKRLKQIFQKFKLI
CCCCCCCCCCCCEEHHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCHHHHHHHHHHHHH
LSTICKVYVSKHYVFQWDYYFIIVFPKIDKSKVSTIAYDIYYKSQMVTFDKDKLFLKCKI
HHHHHHHHHCCCEEEEEEEEEEEEEECCCCHHHHEEEEEEEEECEEEEECCCCEEEEEEE
SSIKFPEYGTKLLLLIKYLKSYLDDSSFLGYYSEFNFLEFTTGLKKEFEALALFKEAQMS
CCEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCEEEHHHHHHHHHHHHHHHHHHHH
EKLFFAYQPIVESRTGKILYYECLLRILDAANKLTSAEPFILLAEKNGFINVIDKMVLQF
HHHHEEEHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHH
AIKELSSVPDLTLAINISNIGVLDSSLIAMADELLSSYPVADRLTIEITETAFNNDVIKT
HHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHH
IEFIEAMHNKGCQVAIDDFGAGFFSFKHLQMLQVDIIKIGGCFIRDINDNYYNKSIVKTL
HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHEEEEEEECCEEEEECCCCCCHHHHHHHH
VETAAGRGIETVAEFVENGQIAKILMDINVNYMQGNFFAPAMHYKPWNSG
HHHHCCCCHHHHHHHHHCCCEEEEEEEEEEEEEECCEECCEECCCCCCCC
>Mature Secondary Structure
MMRHNFCSTRPWLKVTNVFDDFIKHGGGVVLLIKIQNYNNLLLIAANKRLKQIFQKFKLI
CCCCCCCCCCCCEEHHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCHHHHHHHHHHHHH
LSTICKVYVSKHYVFQWDYYFIIVFPKIDKSKVSTIAYDIYYKSQMVTFDKDKLFLKCKI
HHHHHHHHHCCCEEEEEEEEEEEEEECCCCHHHHEEEEEEEEECEEEEECCCCEEEEEEE
SSIKFPEYGTKLLLLIKYLKSYLDDSSFLGYYSEFNFLEFTTGLKKEFEALALFKEAQMS
CCEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCEEEHHHHHHHHHHHHHHHHHHHH
EKLFFAYQPIVESRTGKILYYECLLRILDAANKLTSAEPFILLAEKNGFINVIDKMVLQF
HHHHEEEHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHH
AIKELSSVPDLTLAINISNIGVLDSSLIAMADELLSSYPVADRLTIEITETAFNNDVIKT
HHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHH
IEFIEAMHNKGCQVAIDDFGAGFFSFKHLQMLQVDIIKIGGCFIRDINDNYYNKSIVKTL
HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHEEEEEEECCEEEEECCCCCCHHHHHHHH
VETAAGRGIETVAEFVENGQIAKILMDINVNYMQGNFFAPAMHYKPWNSG
HHHHCCCCHHHHHHHHHCCCEEEEEEEEEEEEEECCEECCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]