Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
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Accession | NC_010793 |
Length | 2,008,987 |
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The map label for this gene is ykfC [H]
Identifier: 189184590
GI number: 189184590
Start: 1707902
End: 1709041
Strand: Reverse
Name: ykfC [H]
Synonym: OTT_1683
Alternate gene names: 189184590
Gene position: 1709041-1707902 (Counterclockwise)
Preceding gene: 189184591
Following gene: 189184589
Centisome position: 85.07
GC content: 33.68
Gene sequence:
>1140_bases ATGGCTGTACACAGCATAGACAGAAATACATGGTTAACGAAACTTGAGCGTATAAAGTTGCTATCATCGAAAAATCAAGA CATAAAGTTTAATAATCTTGGACATATTATCGATTTAAAGATGTTAGAAGAACAATATAAGGAACTCGATAGCAAGAAAG CTATAGGAATAGATGGTATAACCAAAGAGGATTATGGTAAGAAATTGAAAGCAAATCTGCTCTCGCTTCTTACAAGAGTT CGCAAAGGGCAATATCAAGCTAAACCTGCACGAATAGTGAAAATTCCAAAAGAAGATGGAGGCAAAAGACCTTTGGTAAT ATCATGCTTTGAAGATAAGATAATCGAGTCTACAGTAAGCAAGATACTAAACTCTGTGTTTGAGCCAATATTCTTAAAGT ATTCATATGGATTTCGACCTAAGTTAAATGCACACGATGCTTTAAGGGAGTTAAATAGACTTACGTATAACTTCAATAAA GGGGCTATAGTAGAGATTGATATAACAAAGTGTTTCAATACAATCAAGCATTGTGAGTTGATGGAATTTCTAAGAAAGAG AATATCTGACAAGAAATTTCTAAGACTAGTTATGAAACTGATTGAAACACCAATCATAGAAAATGATACTATAGTTACTA ACAAAGAAGGTTGCCGTCAAGGCTCAATAGTTTCGCCAATTCTGGCTAATATCTTTCTGCATTATGTTATAGATAGCTGG TTTGCCAAAATCAGCAAAGAAAACTTAATTGGACAAACAGGAATGGTGAGGTATTGCAACGATATGGTATTTGTCTTTGA AAGGGAAGCAGATGCGAAAAAGTTTTATGATGTTTTGCCTAAAAGGTTAAATAAGTATGGGCTAAATATCAATGAAGCTA AATCACAAATGATAAAATCTGGTAGAGACCATGCTGCAAATTTAGCAAAACAAGGCAAAAAGATCGCAAGTTATAATTTT CTTGGATTTACTTGCTATTGGGGCAAATCAAGATTTGGTACAACATGGAGACTAAAATATACTTCAAGGAGAGATCGTTT TACCGAGAAACTGAAAGGACTGAGAAAATATTTGCGTAGTCAGCTAAACAAGCAAGATAAAACACAAACATTATCACAAG TCATTAGAGTTATTAGGTGA
Upstream 100 bases:
>100_bases ATGGTGTAAGGATGGCTGAGTTAACCATAGTAGTGATGAAACCAAGTAATGTTGGTGGAGCGAAGGGTTAGCAGAAAAGT AAGAATGCAAGAGGGAAACA
Downstream 100 bases:
>100_bases ATGGATCAACTATCATGGTATATCGGATAACAAAAGACGAGTAAGTTCATTTATCAACCAAAGTACACGTGCAATATATA ACTGGTTCAATAGAATGGGA
Product: reverse transcriptase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 379; Mature: 378
Protein sequence:
>379_residues MAVHSIDRNTWLTKLERIKLLSSKNQDIKFNNLGHIIDLKMLEEQYKELDSKKAIGIDGITKEDYGKKLKANLLSLLTRV RKGQYQAKPARIVKIPKEDGGKRPLVISCFEDKIIESTVSKILNSVFEPIFLKYSYGFRPKLNAHDALRELNRLTYNFNK GAIVEIDITKCFNTIKHCELMEFLRKRISDKKFLRLVMKLIETPIIENDTIVTNKEGCRQGSIVSPILANIFLHYVIDSW FAKISKENLIGQTGMVRYCNDMVFVFEREADAKKFYDVLPKRLNKYGLNINEAKSQMIKSGRDHAANLAKQGKKIASYNF LGFTCYWGKSRFGTTWRLKYTSRRDRFTEKLKGLRKYLRSQLNKQDKTQTLSQVIRVIR
Sequences:
>Translated_379_residues MAVHSIDRNTWLTKLERIKLLSSKNQDIKFNNLGHIIDLKMLEEQYKELDSKKAIGIDGITKEDYGKKLKANLLSLLTRV RKGQYQAKPARIVKIPKEDGGKRPLVISCFEDKIIESTVSKILNSVFEPIFLKYSYGFRPKLNAHDALRELNRLTYNFNK GAIVEIDITKCFNTIKHCELMEFLRKRISDKKFLRLVMKLIETPIIENDTIVTNKEGCRQGSIVSPILANIFLHYVIDSW FAKISKENLIGQTGMVRYCNDMVFVFEREADAKKFYDVLPKRLNKYGLNINEAKSQMIKSGRDHAANLAKQGKKIASYNF LGFTCYWGKSRFGTTWRLKYTSRRDRFTEKLKGLRKYLRSQLNKQDKTQTLSQVIRVIR >Mature_378_residues AVHSIDRNTWLTKLERIKLLSSKNQDIKFNNLGHIIDLKMLEEQYKELDSKKAIGIDGITKEDYGKKLKANLLSLLTRVR KGQYQAKPARIVKIPKEDGGKRPLVISCFEDKIIESTVSKILNSVFEPIFLKYSYGFRPKLNAHDALRELNRLTYNFNKG AIVEIDITKCFNTIKHCELMEFLRKRISDKKFLRLVMKLIETPIIENDTIVTNKEGCRQGSIVSPILANIFLHYVIDSWF AKISKENLIGQTGMVRYCNDMVFVFEREADAKKFYDVLPKRLNKYGLNINEAKSQMIKSGRDHAANLAKQGKKIASYNFL GFTCYWGKSRFGTTWRLKYTSRRDRFTEKLKGLRKYLRSQLNKQDKTQTLSQVIRVIR
Specific function: Unknown
COG id: COG3344
COG function: function code L; Retron-type reverse transcriptase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 reverse transcriptase domain [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6226520, Length=205, Percent_Identity=33.6585365853659, Blast_Score=111, Evalue=1e-25, Organism=Saccharomyces cerevisiae, GI6226521, Length=206, Percent_Identity=33.9805825242718, Blast_Score=106, Evalue=5e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015706 - InterPro: IPR000477 [H]
Pfam domain/function: PF00078 RVT_1 [H]
EC number: NA
Molecular weight: Translated: 44110; Mature: 43979
Theoretical pI: Translated: 10.50; Mature: 10.50
Prosite motif: PS50878 RT_POL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVHSIDRNTWLTKLERIKLLSSKNQDIKFNNLGHIIDLKMLEEQYKELDSKKAIGIDGI CCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCC TKEDYGKKLKANLLSLLTRVRKGQYQAKPARIVKIPKEDGGKRPLVISCFEDKIIESTVS CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEHHHHHHHHHHHH KILNSVFEPIFLKYSYGFRPKLNAHDALRELNRLTYNFNKGAIVEIDITKCFNTIKHCEL HHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHEEECCCCCEEEEEHHHHHHHHHHHHH MEFLRKRISDKKFLRLVMKLIETPIIENDTIVTNKEGCRQGSIVSPILANIFLHYVIDSW HHHHHHHHCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHH FAKISKENLIGQTGMVRYCNDMVFVFEREADAKKFYDVLPKRLNKYGLNINEAKSQMIKS HHHHHHHHHCCCCCHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC GRDHAANLAKQGKKIASYNFLGFTCYWGKSRFGTTWRLKYTSRRDRFTEKLKGLRKYLRS CCHHHHHHHHCCCHHHCCCEEEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH QLNKQDKTQTLSQVIRVIR HHCCCHHHHHHHHHHHHHC >Mature Secondary Structure AVHSIDRNTWLTKLERIKLLSSKNQDIKFNNLGHIIDLKMLEEQYKELDSKKAIGIDGI CCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCC TKEDYGKKLKANLLSLLTRVRKGQYQAKPARIVKIPKEDGGKRPLVISCFEDKIIESTVS CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEHHHHHHHHHHHH KILNSVFEPIFLKYSYGFRPKLNAHDALRELNRLTYNFNKGAIVEIDITKCFNTIKHCEL HHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHEEECCCCCEEEEEHHHHHHHHHHHHH MEFLRKRISDKKFLRLVMKLIETPIIENDTIVTNKEGCRQGSIVSPILANIFLHYVIDSW HHHHHHHHCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHH FAKISKENLIGQTGMVRYCNDMVFVFEREADAKKFYDVLPKRLNKYGLNINEAKSQMIKS HHHHHHHHHCCCCCHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC GRDHAANLAKQGKKIASYNFLGFTCYWGKSRFGTTWRLKYTSRRDRFTEKLKGLRKYLRS CCHHHHHHHHCCCHHHCCCEEEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH QLNKQDKTQTLSQVIRVIR HHCCCHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]