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The map label for this gene is ykfC [H]

Identifier: 189184470

GI number: 189184470

Start: 1589234

End: 1590373

Strand: Reverse

Name: ykfC [H]

Synonym: OTT_1563

Alternate gene names: 189184470

Gene position: 1590373-1589234 (Counterclockwise)

Preceding gene: 189184472

Following gene: 189184469

Centisome position: 79.16

GC content: 33.6

Gene sequence:

>1140_bases
ATGGCTGTACACAGCATAGACAGAAATACATGGTTAACGAAACTTGAGCGTATAAAGTTGCTATCATCGAAAAATCAAGA
CATAAAGTTTAATAATCTTGGACATATTATCGATTTAAAGATGTTAGAAGAACAATATAAGGAACTCGATAGCAAGAAAG
CTATAGGAATAGATGGTATAACCAAAGAGGATTATGGTAAGAAATTGAAAGCAAATCTGCTCTCGCTTCTTACTAGAATT
CGCAAAGGGCAATATCAAGCTAAACCTGCACGAATAGTGAAAATTCCAAAAGAAGATGGAGGCAAAAGACCTTTGGTAAT
ATCATGTTTTGAAGATAAGATAATCGAGTCTACAGTAAGCAAGATATTAAACTCTGTGTTTGAGCCAATATTCTTAAAGT
ATTCATATGGATTTCATCCTAAATTAAATGCACACTATGCTTTAAGGGAGTTAAATAGACTTACGTATGACTTCAATAAA
GTGGCTATAGTAGAGATTGATATAACAAAGTGTTTCAATACAATTAAGCATTGCGAGTTGATGGAATTTCTAAGAAAGAG
AATATCTGACAAGAAATTTCTAAGACTAGTTATGAAACTGATTGAAACACCAATCATAGAAAATGATACTATAGTTACTA
ACAAAGAAGGTTGCCGTCAAGGCTCAATAGTTTCGCCAATCCTGGCAAATGTCTTTCTGCATTATGTTATAGATAGTTGG
TTTGCAAAAATCAGCGAAGAAAACTTAATTGGACAAACAGGAATGGTAAGGTACTGCGACGATATGGTATTTGTCTTTGA
AAGGGAAGCAGATGCGAAAAGGTTTTATGATGTTTTGCCTAAAAGGTTAAATAAGTATGGGCTAAATATCAATGAAGCTA
AATCACAAATGATAAAATCTGGTAGAGACCATGCTGCAAATTTAGCAAAACAAGGCAAAAAGATCGCAAGTTATAATTTT
CTTGGATTTACTTGCTATTGGGGCAAATCAAGATTTGGTACAACATGGAGACTAAAATATACCTCAAGGAGAGATCGTTT
TACTGAGAAACTGAAAGGACTGAGAAAATATTTGCGTGGTCAGCTAAATACGCAAGACAAAACACAGACATTATCACAAA
TCATTAGAGTTATTAGGTGA

Upstream 100 bases:

>100_bases
ATGGTGTAAGGATGGCTGAGTTAACCATAGTAGTGATGAAACCAAGTAATGTTGGTGGAGCGAAGGGTTAGCAGAAAAGT
AAGAATGCAAGAGGGAAACA

Downstream 100 bases:

>100_bases
ATGGATCAACTATCATGGTATAATCTGATAACAAAAGACGAGTAAGTTCATTTATCAACCAAAGTAAATGGGCAATATAT
AACTGGTTTAATAGAATGGG

Product: reverse transcriptase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MAVHSIDRNTWLTKLERIKLLSSKNQDIKFNNLGHIIDLKMLEEQYKELDSKKAIGIDGITKEDYGKKLKANLLSLLTRI
RKGQYQAKPARIVKIPKEDGGKRPLVISCFEDKIIESTVSKILNSVFEPIFLKYSYGFHPKLNAHYALRELNRLTYDFNK
VAIVEIDITKCFNTIKHCELMEFLRKRISDKKFLRLVMKLIETPIIENDTIVTNKEGCRQGSIVSPILANVFLHYVIDSW
FAKISEENLIGQTGMVRYCDDMVFVFEREADAKRFYDVLPKRLNKYGLNINEAKSQMIKSGRDHAANLAKQGKKIASYNF
LGFTCYWGKSRFGTTWRLKYTSRRDRFTEKLKGLRKYLRGQLNTQDKTQTLSQIIRVIR

Sequences:

>Translated_379_residues
MAVHSIDRNTWLTKLERIKLLSSKNQDIKFNNLGHIIDLKMLEEQYKELDSKKAIGIDGITKEDYGKKLKANLLSLLTRI
RKGQYQAKPARIVKIPKEDGGKRPLVISCFEDKIIESTVSKILNSVFEPIFLKYSYGFHPKLNAHYALRELNRLTYDFNK
VAIVEIDITKCFNTIKHCELMEFLRKRISDKKFLRLVMKLIETPIIENDTIVTNKEGCRQGSIVSPILANVFLHYVIDSW
FAKISEENLIGQTGMVRYCDDMVFVFEREADAKRFYDVLPKRLNKYGLNINEAKSQMIKSGRDHAANLAKQGKKIASYNF
LGFTCYWGKSRFGTTWRLKYTSRRDRFTEKLKGLRKYLRGQLNTQDKTQTLSQIIRVIR
>Mature_378_residues
AVHSIDRNTWLTKLERIKLLSSKNQDIKFNNLGHIIDLKMLEEQYKELDSKKAIGIDGITKEDYGKKLKANLLSLLTRIR
KGQYQAKPARIVKIPKEDGGKRPLVISCFEDKIIESTVSKILNSVFEPIFLKYSYGFHPKLNAHYALRELNRLTYDFNKV
AIVEIDITKCFNTIKHCELMEFLRKRISDKKFLRLVMKLIETPIIENDTIVTNKEGCRQGSIVSPILANVFLHYVIDSWF
AKISEENLIGQTGMVRYCDDMVFVFEREADAKRFYDVLPKRLNKYGLNINEAKSQMIKSGRDHAANLAKQGKKIASYNFL
GFTCYWGKSRFGTTWRLKYTSRRDRFTEKLKGLRKYLRGQLNTQDKTQTLSQIIRVIR

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=205, Percent_Identity=32.6829268292683, Blast_Score=108, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6226521, Length=205, Percent_Identity=33.1707317073171, Blast_Score=103, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 44169; Mature: 44038

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVHSIDRNTWLTKLERIKLLSSKNQDIKFNNLGHIIDLKMLEEQYKELDSKKAIGIDGI
CCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
TKEDYGKKLKANLLSLLTRIRKGQYQAKPARIVKIPKEDGGKRPLVISCFEDKIIESTVS
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEHHHHHHHHHHHH
KILNSVFEPIFLKYSYGFHPKLNAHYALRELNRLTYDFNKVAIVEIDITKCFNTIKHCEL
HHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHH
MEFLRKRISDKKFLRLVMKLIETPIIENDTIVTNKEGCRQGSIVSPILANVFLHYVIDSW
HHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
FAKISEENLIGQTGMVRYCDDMVFVFEREADAKRFYDVLPKRLNKYGLNINEAKSQMIKS
HHHHCCCCCCCCCCHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
GRDHAANLAKQGKKIASYNFLGFTCYWGKSRFGTTWRLKYTSRRDRFTEKLKGLRKYLRG
CCHHHHHHHHCCCHHHCCCEEEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCC
QLNTQDKTQTLSQIIRVIR
CCCCCHHHHHHHHHHHHHC
>Mature Secondary Structure 
AVHSIDRNTWLTKLERIKLLSSKNQDIKFNNLGHIIDLKMLEEQYKELDSKKAIGIDGI
CCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
TKEDYGKKLKANLLSLLTRIRKGQYQAKPARIVKIPKEDGGKRPLVISCFEDKIIESTVS
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEHHHHHHHHHHHH
KILNSVFEPIFLKYSYGFHPKLNAHYALRELNRLTYDFNKVAIVEIDITKCFNTIKHCEL
HHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHH
MEFLRKRISDKKFLRLVMKLIETPIIENDTIVTNKEGCRQGSIVSPILANVFLHYVIDSW
HHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
FAKISEENLIGQTGMVRYCDDMVFVFEREADAKRFYDVLPKRLNKYGLNINEAKSQMIKS
HHHHCCCCCCCCCCHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
GRDHAANLAKQGKKIASYNFLGFTCYWGKSRFGTTWRLKYTSRRDRFTEKLKGLRKYLRG
CCHHHHHHHHCCCHHHCCCEEEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCC
QLNTQDKTQTLSQIIRVIR
CCCCCHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]