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The map label for this gene is traH [H]

Identifier: 189184468

GI number: 189184468

Start: 1588192

End: 1588821

Strand: Reverse

Name: traH [H]

Synonym: OTT_1561

Alternate gene names: 189184468

Gene position: 1588821-1588192 (Counterclockwise)

Preceding gene: 189184469

Following gene: 189184467

Centisome position: 79.09

GC content: 36.98

Gene sequence:

>630_bases
ATGAGCATCAGAATCAGAGTTTATGTTATTGCAGCATTATTTTCGCTACAAGCTCCAGTATCACTAGCCTGGAATATCGA
AAACGTATTTCAAGGAATGAGTGTTAATGTTACTAGATCTGGATCATATCAAGATCAAGCGGCTGGATATTATGCGGCTG
GCGGATTATCTGCCAGAACAAGCCAAACATCATTTCAGCCATTTGCTATAACTCCACCATCTTTAAACATGAGCTGTAGC
GGTATTGATGCCTATCTTGGTAGCTTCTCTGTTATTTCTGGAGAAGAATTAGTTCAATTAATGAAAAACATTGGTTCTCA
AGCTAAAGTTTATGCATTTTCATTAGGATTAAAAACATTTGCTCCACAGATCGAAAATGCTCTTAAGGACTTGCGTAATC
TAGCAATGGAGATGAATCAATTTGCCAAAGGAGATTGTGAATTAACAAAAGCATTATTTGCTACAGCTTTACCAAAGAAC
TGGGCTATGAGAGAAGCTGTTTGCCGTGATATACAGTCACAAAGCGGGTTTGATTATTTTGCAGCTGGTAAAAAATGTCG
TAATTATTTAGATCAAAAACAAGCTCTGCGACAAGCACAAAATAAGGATTCAGAGTTAATGCTAGAATGA

Upstream 100 bases:

>100_bases
GTAAAAAAATATATGCAGTAGCTAGAGGCATAATTTCTGAAGATAAAATTATCGACAATATTCTAGCAATCGATAGATAT
TATCATAAGTTGGAGACTAG

Downstream 100 bases:

>100_bases
TTATAACATCTTCACTAAAGCAGCAGCAAAGGTTGGAATACCATCAAATATGCATGATTCAATCATGTCTATGACTGGCA
CTATCGTGGTTACAAACAAT

Product: putative conjugative transfer protein TraH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MSIRIRVYVIAALFSLQAPVSLAWNIENVFQGMSVNVTRSGSYQDQAAGYYAAGGLSARTSQTSFQPFAITPPSLNMSCS
GIDAYLGSFSVISGEELVQLMKNIGSQAKVYAFSLGLKTFAPQIENALKDLRNLAMEMNQFAKGDCELTKALFATALPKN
WAMREAVCRDIQSQSGFDYFAAGKKCRNYLDQKQALRQAQNKDSELMLE

Sequences:

>Translated_209_residues
MSIRIRVYVIAALFSLQAPVSLAWNIENVFQGMSVNVTRSGSYQDQAAGYYAAGGLSARTSQTSFQPFAITPPSLNMSCS
GIDAYLGSFSVISGEELVQLMKNIGSQAKVYAFSLGLKTFAPQIENALKDLRNLAMEMNQFAKGDCELTKALFATALPKN
WAMREAVCRDIQSQSGFDYFAAGKKCRNYLDQKQALRQAQNKDSELMLE
>Mature_208_residues
SIRIRVYVIAALFSLQAPVSLAWNIENVFQGMSVNVTRSGSYQDQAAGYYAAGGLSARTSQTSFQPFAITPPSLNMSCSG
IDAYLGSFSVISGEELVQLMKNIGSQAKVYAFSLGLKTFAPQIENALKDLRNLAMEMNQFAKGDCELTKALFATALPKNW
AMREAVCRDIQSQSGFDYFAAGKKCRNYLDQKQALRQAQNKDSELMLE

Specific function: Involved in pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010927 [H]

Pfam domain/function: PF06122 TraH [H]

EC number: NA

Molecular weight: Translated: 22989; Mature: 22857

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRIRVYVIAALFSLQAPVSLAWNIENVFQGMSVNVTRSGSYQDQAAGYYAAGGLSART
CCEEEEHHHHHHHHHHCCCCCEEECHHHHHCCCEEEEEECCCCCHHHCCEEECCCCCCCC
SQTSFQPFAITPPSLNMSCSGIDAYLGSFSVISGEELVQLMKNIGSQAKVYAFSLGLKTF
CCCCCCCEEECCCCCCCCCCHHHHHHCCCCEECHHHHHHHHHHCCCCCEEEHHHHHHHHH
APQIENALKDLRNLAMEMNQFAKGDCELTKALFATALPKNWAMREAVCRDIQSQSGFDYF
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHH
AAGKKCRNYLDQKQALRQAQNKDSELMLE
HHHHHHHHHHHHHHHHHHHHCCCCCEECC
>Mature Secondary Structure 
SIRIRVYVIAALFSLQAPVSLAWNIENVFQGMSVNVTRSGSYQDQAAGYYAAGGLSART
CEEEEHHHHHHHHHHCCCCCEEECHHHHHCCCEEEEEECCCCCHHHCCEEECCCCCCCC
SQTSFQPFAITPPSLNMSCSGIDAYLGSFSVISGEELVQLMKNIGSQAKVYAFSLGLKTF
CCCCCCCEEECCCCCCCCCCHHHHHHCCCCEECHHHHHHHHHHCCCCCEEEHHHHHHHHH
APQIENALKDLRNLAMEMNQFAKGDCELTKALFATALPKNWAMREAVCRDIQSQSGFDYF
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHH
AAGKKCRNYLDQKQALRQAQNKDSELMLE
HHHHHHHHHHHHHHHHHHHHCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1348105; 7915817; 2656408 [H]