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The map label for this gene is traC [H]

Identifier: 189184404

GI number: 189184404

Start: 1526067

End: 1527938

Strand: Reverse

Name: traC [H]

Synonym: OTT_1497

Alternate gene names: 189184404

Gene position: 1527938-1526067 (Counterclockwise)

Preceding gene: 189184405

Following gene: 189184402

Centisome position: 76.06

GC content: 35.74

Gene sequence:

>1872_bases
TTGTTAATAAGTCGCCGAAAAAACCAAAAAAATATCTTATTAATTTATTTAAATCAAAACAGAGTCAAGGTGAACGCAAG
CATACATAAGGATTTTGATCGAGAAAGATTTTCTAAACACTTTGTCTATGAATCATATGATGATGAGACTCAGCTATTCT
TTAATCGTTGTTCAATAGGCTTTGTATTGCTTGCATGCCCATTGGCTGAAGCTAGTGTTTCGGCTCAAAATGAAATTGCT
GAATTTCTGAAAAGCGATGAAAATTTACCTGCTGAAAGTAGCCTTCAAGTATTGATGATTGGTAGTAATAATATAGAGAA
TTTTTTAAGCAACTGGCAGTCATATCGTAAAGGAGAGATATTTATTGAGTTAGCAAATAAAAGAACAGAGTTTTTGCGTG
ATCAAGCTCAAAAAGTAGGTTCTATAAAGGATGTAGTATTGTTAATTTCAGTTACTATACCTAATTTAAATGCAAATATC
GATGATATGATTCGCAGACGAGATGCTTTAAAAGATACGTTTAGGTCAATTGGATTAAGCACTGAAAATGTGAATGCGCA
GCAATTATTAAAGTTTCTGAGAGTAATATTTGGCTGGCCTGAAGAAGAACATTCAAATATTAACCAGTATGAAATATTGT
CTGAACAAATTCTAAGTGGAGATTTTTCGTTATTTGAGAATGATGATTGTGTAAATGTAAATGATGATCAAATATTTATC
AGTCTAGAAGCAAGAAAGAGGCCTGCAGAGTGGAAATTATCTGCTATGGATCTGTTTTTAGGTAATGAAATGCGTCGTGA
TGAATATATAAAATCAAATTTCCTGATTCATTTTGGTCTGCAAATTTTACCAAATCAAGCGATGGAAAGGACTGCTGCCA
TAACTAAAAGAGAAGCGCTAGAAAGAAATATTAATGCGGGAATGGGTAAATTTTTTCCTGACATACAACAAGAAGCTGCT
GATTTAGCTGGTGTAGTAGCTGCTTTACAGAGTGGTGATAGAGTCGTTAATATTCACTTCAATGTTATTATGTTTGACAA
AATAAAAAAAGCTAAGCAATCTGCATCGGCCTTTTGTTCGATGTTAAGGCGCAGTGGATGGTATTTTGTGCCATGTAAAT
ATGATCATGTGGCCGTGTTACTAGCTGCACTACCAATGCAATTAGTTGAACAAGGCCCAAAAGGTATATTGGGTCAAAAA
ACATCAGGAGTTGGAGTAGCACTTTCTAGCTTAGGTAGAGGCATAAAAACTGTTTCTGTAGAGAGTAAAGTATTATTGCC
AATCATTAGTGAATGGAAAGGTGATTTAAGCTCTCCAGGTATGTTGCTAGCTGGAAGACGAGGTCAAATAATGTACTGGT
CGCCTTTTGGTGGAGCTTTATTACCTGCGTTAAATAAGCATGGAGTAGCTCCAAATGAGAACTTTAACCTTTGTATAGCT
GGAGTTCCAGGCTCTGGAAAATCTGTTTTTATGCAAGAATTAATGCTATCTGTTCTAGGAGTTGGTGGTAAAGTTTTTGT
TCTTGATTATGGAAGATCATTTAAGCGTACATGCTTGATTCTAGGCGGCAGCTACATAGAATTTGACATGAAAAATCCTG
TATCAATTAATCCATTTTCAGAGGTGCCAGAGGATGATAGTGCAAAGTCTATAGAGGCTAGATCAGACTTTTTATCTAAC
TTTCCATCTATTTTAGCTACTATGGCAGCTCCACAGTATGGAACAAGCGATCTACAACAACCAATGCTACAGAGAGCTTT
AATATCTGTGCTATTCTTCCTCATATATAGCATGTGCTCCTCCAACTTCAGCTTCAACTTCAGCACCAGCTTCACCAGCT
TCTGCTACATCAGTGCGTTGAATTTTTGTTAA

Upstream 100 bases:

>100_bases
GATATTGATAATCTTGAGAAAGTTGAAACATCCAAAACTAAATCAAAAAGACGTTGTATTCTATGCTACAGGCAAGCTAA
AGCTATTCAAAGCGTAGCTG

Downstream 100 bases:

>100_bases
ATCATCGTTATCTAAATTCTCTAATATCATAAACCTTACTTCTGGTGGCAAGTGAGACCAAGATGTCTGACTTTTTTGAG
AAGCGTCCTGATTGGATTCA

Product: putative conjugative transfer protein TraC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 623; Mature: 623

Protein sequence:

>623_residues
MLISRRKNQKNILLIYLNQNRVKVNASIHKDFDRERFSKHFVYESYDDETQLFFNRCSIGFVLLACPLAEASVSAQNEIA
EFLKSDENLPAESSLQVLMIGSNNIENFLSNWQSYRKGEIFIELANKRTEFLRDQAQKVGSIKDVVLLISVTIPNLNANI
DDMIRRRDALKDTFRSIGLSTENVNAQQLLKFLRVIFGWPEEEHSNINQYEILSEQILSGDFSLFENDDCVNVNDDQIFI
SLEARKRPAEWKLSAMDLFLGNEMRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREALERNINAGMGKFFPDIQQEAA
DLAGVVAALQSGDRVVNIHFNVIMFDKIKKAKQSASAFCSMLRRSGWYFVPCKYDHVAVLLAALPMQLVEQGPKGILGQK
TSGVGVALSSLGRGIKTVSVESKVLLPIISEWKGDLSSPGMLLAGRRGQIMYWSPFGGALLPALNKHGVAPNENFNLCIA
GVPGSGKSVFMQELMLSVLGVGGKVFVLDYGRSFKRTCLILGGSYIEFDMKNPVSINPFSEVPEDDSAKSIEARSDFLSN
FPSILATMAAPQYGTSDLQQPMLQRALISVLFFLIYSMCSSNFSFNFSTSFTSFCYISALNFC

Sequences:

>Translated_623_residues
MLISRRKNQKNILLIYLNQNRVKVNASIHKDFDRERFSKHFVYESYDDETQLFFNRCSIGFVLLACPLAEASVSAQNEIA
EFLKSDENLPAESSLQVLMIGSNNIENFLSNWQSYRKGEIFIELANKRTEFLRDQAQKVGSIKDVVLLISVTIPNLNANI
DDMIRRRDALKDTFRSIGLSTENVNAQQLLKFLRVIFGWPEEEHSNINQYEILSEQILSGDFSLFENDDCVNVNDDQIFI
SLEARKRPAEWKLSAMDLFLGNEMRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREALERNINAGMGKFFPDIQQEAA
DLAGVVAALQSGDRVVNIHFNVIMFDKIKKAKQSASAFCSMLRRSGWYFVPCKYDHVAVLLAALPMQLVEQGPKGILGQK
TSGVGVALSSLGRGIKTVSVESKVLLPIISEWKGDLSSPGMLLAGRRGQIMYWSPFGGALLPALNKHGVAPNENFNLCIA
GVPGSGKSVFMQELMLSVLGVGGKVFVLDYGRSFKRTCLILGGSYIEFDMKNPVSINPFSEVPEDDSAKSIEARSDFLSN
FPSILATMAAPQYGTSDLQQPMLQRALISVLFFLIYSMCSSNFSFNFSTSFTSFCYISALNFC
>Mature_623_residues
MLISRRKNQKNILLIYLNQNRVKVNASIHKDFDRERFSKHFVYESYDDETQLFFNRCSIGFVLLACPLAEASVSAQNEIA
EFLKSDENLPAESSLQVLMIGSNNIENFLSNWQSYRKGEIFIELANKRTEFLRDQAQKVGSIKDVVLLISVTIPNLNANI
DDMIRRRDALKDTFRSIGLSTENVNAQQLLKFLRVIFGWPEEEHSNINQYEILSEQILSGDFSLFENDDCVNVNDDQIFI
SLEARKRPAEWKLSAMDLFLGNEMRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREALERNINAGMGKFFPDIQQEAA
DLAGVVAALQSGDRVVNIHFNVIMFDKIKKAKQSASAFCSMLRRSGWYFVPCKYDHVAVLLAALPMQLVEQGPKGILGQK
TSGVGVALSSLGRGIKTVSVESKVLLPIISEWKGDLSSPGMLLAGRRGQIMYWSPFGGALLPALNKHGVAPNENFNLCIA
GVPGSGKSVFMQELMLSVLGVGGKVFVLDYGRSFKRTCLILGGSYIEFDMKNPVSINPFSEVPEDDSAKSIEARSDFLSN
FPSILATMAAPQYGTSDLQQPMLQRALISVLFFLIYSMCSSNFSFNFSTSFTSFCYISALNFC

Specific function: Required for the assembly of mature F-pilin subunits into extended F pili [H]

COG id: COG3451

COG function: function code U; Type IV secretory pathway, VirB4 components

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002789
- InterPro:   IPR014117 [H]

Pfam domain/function: PF01935 DUF87 [H]

EC number: NA

Molecular weight: Translated: 69792; Mature: 69792

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLISRRKNQKNILLIYLNQNRVKVNASIHKDFDRERFSKHFVYESYDDETQLFFNRCSIG
CCCCCCCCCCCEEEEEEECCEEEEEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
FVLLACPLAEASVSAQNEIAEFLKSDENLPAESSLQVLMIGSNNIENFLSNWQSYRKGEI
HHHHHCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEE
FIELANKRTEFLRDQAQKVGSIKDVVLLISVTIPNLNANIDDMIRRRDALKDTFRSIGLS
EEEEHHHHHHHHHHHHHHHCCHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
TENVNAQQLLKFLRVIFGWPEEEHSNINQYEILSEQILSGDFSLFENDDCVNVNDDQIFI
CCCCCHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEE
SLEARKRPAEWKLSAMDLFLGNEMRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREAL
EEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHCEEEEECHHHCCCHHHHHHHHHHHHHHH
ERNINAGMGKFFPDIQQEAADLAGVVAALQSGDRVVNIHFNVIMFDKIKKAKQSASAFCS
HHHCCCCCHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEHHHHHHHHHHHHHHH
MLRRSGWYFVPCKYDHVAVLLAALPMQLVEQGPKGILGQKTSGVGVALSSLGRGIKTVSV
HHHHCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
ESKVLLPIISEWKGDLSSPGMLLAGRRGQIMYWSPFGGALLPALNKHGVAPNENFNLCIA
CCEEHHHHHHHHCCCCCCCCEEEECCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCEEEE
GVPGSGKSVFMQELMLSVLGVGGKVFVLDYGRSFKRTCLILGGSYIEFDMKNPVSINPFS
ECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEECCCEEEEECCCCCCCCCHH
EVPEDDSAKSIEARSDFLSNFPSILATMAAPQYGTSDLQQPMLQRALISVLFFLIYSMCS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
SNFSFNFSTSFTSFCYISALNFC
CCCEEEECCCHHHHHHHHHHCCC
>Mature Secondary Structure
MLISRRKNQKNILLIYLNQNRVKVNASIHKDFDRERFSKHFVYESYDDETQLFFNRCSIG
CCCCCCCCCCCEEEEEEECCEEEEEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
FVLLACPLAEASVSAQNEIAEFLKSDENLPAESSLQVLMIGSNNIENFLSNWQSYRKGEI
HHHHHCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEE
FIELANKRTEFLRDQAQKVGSIKDVVLLISVTIPNLNANIDDMIRRRDALKDTFRSIGLS
EEEEHHHHHHHHHHHHHHHCCHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
TENVNAQQLLKFLRVIFGWPEEEHSNINQYEILSEQILSGDFSLFENDDCVNVNDDQIFI
CCCCCHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEE
SLEARKRPAEWKLSAMDLFLGNEMRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREAL
EEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHCEEEEECHHHCCCHHHHHHHHHHHHHHH
ERNINAGMGKFFPDIQQEAADLAGVVAALQSGDRVVNIHFNVIMFDKIKKAKQSASAFCS
HHHCCCCCHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEHHHHHHHHHHHHHHH
MLRRSGWYFVPCKYDHVAVLLAALPMQLVEQGPKGILGQKTSGVGVALSSLGRGIKTVSV
HHHHCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
ESKVLLPIISEWKGDLSSPGMLLAGRRGQIMYWSPFGGALLPALNKHGVAPNENFNLCIA
CCEEHHHHHHHHCCCCCCCCEEEECCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCEEEE
GVPGSGKSVFMQELMLSVLGVGGKVFVLDYGRSFKRTCLILGGSYIEFDMKNPVSINPFS
ECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEECCCEEEEECCCCCCCCCHH
EVPEDDSAKSIEARSDFLSNFPSILATMAAPQYGTSDLQQPMLQRALISVLFFLIYSMCS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
SNFSFNFSTSFTSFCYISALNFC
CCCEEEECCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2265751; 7915817; 1355084 [H]