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The map label for this gene is traU [H]

Identifier: 189184402

GI number: 189184402

Start: 1524416

End: 1525003

Strand: Reverse

Name: traU [H]

Synonym: OTT_1495

Alternate gene names: 189184402

Gene position: 1525003-1524416 (Counterclockwise)

Preceding gene: 189184404

Following gene: 189184401

Centisome position: 75.91

GC content: 38.27

Gene sequence:

>588_bases
TTGTATGTCTATCACGTGATTTATTGGTTAGAGATTTTGCTTGATTTTATTTGTCTGGAAATGGCTGCAGTCGATATAGC
ATATTTAACAGAGTTTGATCCATTATGGAGTGACGATGCAAAATCTGCGATTTTAAATCCAGAAACGCTGTTGTTTCAAA
ATGTAGCTGCTTATCAAGCATGTATAGCTGATTGCATGGGTTGTAGCGCTGGTTTATTAGCAAGTGATTATGCTTTTTGG
TGTGCCGAATGTCAAGGAATGCTTTACCCTTTCACTGGAACAGCTGCTGCGCATAATGGTGGAGTTGGAACATCTGTATT
AATGGTAAGTAAGTTTATGGCTAAGATGCATAGGCAGCTGATGTTATGGGGATATTATGGTTATAAAGGCCTATGTGGTA
AGTATCCAATGCCTATCATCAAGAAAAGTCAGTATCGACTACAAATGACTTATCCAATTCCAGAAACCAAATCCTGTAAG
AGCATAGGTCAAACAGAAGCTACATGGCAAGCTGGCAGAGAATTTCCAGTTAATGGTGAAGATTTTGGTTACTTGATTTG
GCGAAAAAGAGATTGTTGTTTGCTTTGA

Upstream 100 bases:

>100_bases
TGATATTATTATACATTAAACGAACAGTAATACAATTCAAAGTTGACTTAAGTTTCTTGCTTTATTAATAAGTTCAAGAT
CACATACATTTGTATAACAT

Downstream 100 bases:

>100_bases
TTTATAAAGCTTGGAGAGGAATATGGTTATACGAGTAATGATGTTGATGGTTTTATTATTTGTTAATAATGCTAATGCTT
TTTTTTTGGACAAGCAAAAA

Product: putative conjugative transfer protein TraU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MYVYHVIYWLEILLDFICLEMAAVDIAYLTEFDPLWSDDAKSAILNPETLLFQNVAAYQACIADCMGCSAGLLASDYAFW
CAECQGMLYPFTGTAAAHNGGVGTSVLMVSKFMAKMHRQLMLWGYYGYKGLCGKYPMPIIKKSQYRLQMTYPIPETKSCK
SIGQTEATWQAGREFPVNGEDFGYLIWRKRDCCLL

Sequences:

>Translated_195_residues
MYVYHVIYWLEILLDFICLEMAAVDIAYLTEFDPLWSDDAKSAILNPETLLFQNVAAYQACIADCMGCSAGLLASDYAFW
CAECQGMLYPFTGTAAAHNGGVGTSVLMVSKFMAKMHRQLMLWGYYGYKGLCGKYPMPIIKKSQYRLQMTYPIPETKSCK
SIGQTEATWQAGREFPVNGEDFGYLIWRKRDCCLL
>Mature_195_residues
MYVYHVIYWLEILLDFICLEMAAVDIAYLTEFDPLWSDDAKSAILNPETLLFQNVAAYQACIADCMGCSAGLLASDYAFW
CAECQGMLYPFTGTAAAHNGGVGTSVLMVSKFMAKMHRQLMLWGYYGYKGLCGKYPMPIIKKSQYRLQMTYPIPETKSCK
SIGQTEATWQAGREFPVNGEDFGYLIWRKRDCCLL

Specific function: Appears to be more essential to conjugal DNA transfer than to assembly of pilus filaments. Required for F plasmid conjugative transfer [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009649 [H]

Pfam domain/function: PF06834 TraU [H]

EC number: NA

Molecular weight: Translated: 22072; Mature: 22072

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.1 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
10.3 %Cys+Met (Translated Protein)
5.1 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
10.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYVYHVIYWLEILLDFICLEMAAVDIAYLTEFDPLWSDDAKSAILNPETLLFQNVAAYQA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHH
CIADCMGCSAGLLASDYAFWCAECQGMLYPFTGTAAAHNGGVGTSVLMVSKFMAKMHRQL
HHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
MLWGYYGYKGLCGKYPMPIIKKSQYRLQMTYPIPETKSCKSIGQTEATWQAGREFPVNGE
HHHEECCCCCCCCCCCCCCEECCCEEEEEEECCCCCCCHHHCCCCHHHHHCCCCCCCCCC
DFGYLIWRKRDCCLL
CCEEEEEECCCCCCC
>Mature Secondary Structure
MYVYHVIYWLEILLDFICLEMAAVDIAYLTEFDPLWSDDAKSAILNPETLLFQNVAAYQA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHH
CIADCMGCSAGLLASDYAFWCAECQGMLYPFTGTAAAHNGGVGTSVLMVSKFMAKMHRQL
HHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
MLWGYYGYKGLCGKYPMPIIKKSQYRLQMTYPIPETKSCKSIGQTEATWQAGREFPVNGE
HHHEECCCCCCCCCCCCCCEECCCEEEEEEECCCCCCCHHHCCCCHHHHHCCCCCCCCCC
DFGYLIWRKRDCCLL
CCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2198250; 7915817; 2050638; 1355084 [H]