| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
Click here to switch to the map view.
The map label for this gene is traG [H]
Identifier: 189184393
GI number: 189184393
Start: 1516419
End: 1518770
Strand: Reverse
Name: traG [H]
Synonym: OTT_1486
Alternate gene names: 189184393
Gene position: 1518770-1516419 (Counterclockwise)
Preceding gene: 189184394
Following gene: 189184392
Centisome position: 75.6
GC content: 35.33
Gene sequence:
>2352_bases ATGTTTGCTTCTCTTTCCTCGCAAACGAGTTATTTTGTATCTAAAATGTTGGAAAATCATCTTTTACCGGCTTATGAAGG ACTATCGAGCAGAAAAACTGGTATTATGTTTGGAGCTAAGGCTGTAGCTAAGATTCGAGATGTGCAAATACATGATCCAG TAACTTTAACTAATACTAAGGAATTTCTTAGACAATGCTTTATGAAGCCTTACATCATAGGTAATATCTTAGGTAAAAAA GCAGCTGCTCAACAAACTAATGATATCATAGGATTTATCGAGCAGAATATACCTAATAATTTCGGTATTTATTATCGCGA ACCTAGTAATTTAGGTATTAGTTTCAAGACATGCAGACAAGCTACTCCATTAATTAAGGCAGCAATTCATAAAGAATTAA ACGAAGGACTTCTAACCAAGTTTGCAGCTGCGATTGGAGTTCAATCTGATCAGTCACACATGTTAAGTCAAAGACTAAAA GTCATGACTGGAGATACACTAAAATATCTACAAAGAGAACAACAAGACATTCATGAATGGATGAAGCAAGCTATGCTACT TAATGCTAATCGTGAGTCATATGATGACTGGCGTGAGAAGTTTTCATTATCACGAATTTATCCTAATCTGGTGAGTATGC ATGCAATCAGAGGGCTCTTTCAAAAATCATTTTCGTATCTAGTCGCTGGGGAAATGGCTGCTCACATGATGCCTATTTTA CAATCTGTTTTTTTTGCATTAGTAGTCTCAATGATCTTTATTGTATTTCCAATGGGCCTATTACCTGGCGGCTATAACAT ACTCAAAACATGGATTTTGTTAATAATATGGGTCAGCAGCTGGCCAGTATTTTTTACAATAATCCATTGTCTAGGAATGA TCAGCTTATCCAGTAAATCTGGAGCTTTCGGTAGTGATTATGGTCTGAATATGCTATCGCAAGGAAGCTTTGCAGAGATG ATTTTATATAGCTATGCGACATTTCAAATGCTTGCATCATCAATACCAATGCTTTCTTGGTCAGTGATAAAAGCTTGTGC TCATGCTACAGCTAACTTAGCCAGCCAGTTCTCTCCTATACAAGTTGCTAGCAGCTTAGGAAGTAATATAGTCGACAATA ACTTGAGTATGGATAATTACAGCATAGGCAATAGAACTATTTCTCAACAAAACCTAGCTCCTTCATTAGATATGACTGAT AGTATTATCAATTATGGTAGCTACAAAATTATTACTGGAAATAATGGCGAGCAATTTGTAATTCAAACTGTAGATTCATT GGGAAATAACTTCCGCTCTTCTGCACTGCTACAAACTGGATATCAAAACCAGTTTACGCGTTCTCAGAGCATTCTTGATT CACTGACACAAAAAGAGGCCAATCTTATTTCAACAGGAAACTCCATGGCCATAGACATAGGCAGAAGGTTAACTCATGAT GAAGCTCTGTCTATAGGCCTAACTGAGAGCGAATACCAAGCCTTGCAGGAGGTTGGTTCTAGTAGCATTTCTACTACTGA ACATACAGGTAGTAGCTACAGTAAAAGTACTAGTACTAGTACTAGTGCTGGAGCTGGTGTGTGGAAATTTGATAGTAGAG TTTCAGGAGGAGATACTGAAGAAGAAACCCAAGGAAAATCAGCAAATCAACAACAATCACATAGTGAAGCATTATCAAAA ATTCAAAGCGCAGTTCAAGAAGGAAAATTTAGTAGTACAAATAGTGAGGTGAAGTCATTAAGTGAAAATCTTAGTGCTAA CCTTTCTGAGCAACAATCTGTTGGGCAAGAAATAGCTAAAACTAAACAAGAAATGGAGCAACTTACTCATAGTATAAACT ATGTATTCCAAAACTCTGCCACTATTGATCGTAACATTAATGAACTCGTATTAAATGAAATTATAGCTCAAAATCCTGAA ATAAGAAGCAAGGAGCAAGCAGCTAGATGGATAATGTATCACTCGGCTGAAGCAGAAAAAATTGCCTTGGAGGTTGCTAA AATCAACAATAAAGTACCTAATGAAATACCTAAAGATTTGAATGATCATATTAATGATGGTAACTTTTCGACTAAAAAAG ATCTACAAAATACTTTTGAGAAGAATGTTGAACAATTACAAGCTGAGGCTAGTAACATTCATAATAACAGCAATGTAGTG CATGTACAAAATATAGAACAAACTTTTAGTGATAACGAAAAAGTAAAGACTCTTGATAAAATTCCTGATAATATTAAAAC TGAGGCTCAAAAAATACAGAAAAAGTTTTCTGATACTACTGATTCAACGGTTTTAATGGCTGGTAATCAAGCCTTGGAAA ATCTTGGAATAACGAAAAAAGATAAAAGTTAA
Upstream 100 bases:
>100_bases TTAATCAATCAGAAATAATAATTTTATAAAAACTTACATCTTTTTTATAAAATTATTATTTCTTTTCTTGATTCTTATCA CGGTATCTATAGGTATTGCA
Downstream 100 bases:
>100_bases AAGTATGTTGGATTTATGAAAAATATATATAAATTAGCTATAACAATAATTTTACCACTAATGCTTTTAAATACAGCTAT TCCTGCAGAAGAAAGCAAGC
Product: putative conjugative transfer protein TraG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 783; Mature: 783
Protein sequence:
>783_residues MFASLSSQTSYFVSKMLENHLLPAYEGLSSRKTGIMFGAKAVAKIRDVQIHDPVTLTNTKEFLRQCFMKPYIIGNILGKK AAAQQTNDIIGFIEQNIPNNFGIYYREPSNLGISFKTCRQATPLIKAAIHKELNEGLLTKFAAAIGVQSDQSHMLSQRLK VMTGDTLKYLQREQQDIHEWMKQAMLLNANRESYDDWREKFSLSRIYPNLVSMHAIRGLFQKSFSYLVAGEMAAHMMPIL QSVFFALVVSMIFIVFPMGLLPGGYNILKTWILLIIWVSSWPVFFTIIHCLGMISLSSKSGAFGSDYGLNMLSQGSFAEM ILYSYATFQMLASSIPMLSWSVIKACAHATANLASQFSPIQVASSLGSNIVDNNLSMDNYSIGNRTISQQNLAPSLDMTD SIINYGSYKIITGNNGEQFVIQTVDSLGNNFRSSALLQTGYQNQFTRSQSILDSLTQKEANLISTGNSMAIDIGRRLTHD EALSIGLTESEYQALQEVGSSSISTTEHTGSSYSKSTSTSTSAGAGVWKFDSRVSGGDTEEETQGKSANQQQSHSEALSK IQSAVQEGKFSSTNSEVKSLSENLSANLSEQQSVGQEIAKTKQEMEQLTHSINYVFQNSATIDRNINELVLNEIIAQNPE IRSKEQAARWIMYHSAEAEKIALEVAKINNKVPNEIPKDLNDHINDGNFSTKKDLQNTFEKNVEQLQAEASNIHNNSNVV HVQNIEQTFSDNEKVKTLDKIPDNIKTEAQKIQKKFSDTTDSTVLMAGNQALENLGITKKDKS
Sequences:
>Translated_783_residues MFASLSSQTSYFVSKMLENHLLPAYEGLSSRKTGIMFGAKAVAKIRDVQIHDPVTLTNTKEFLRQCFMKPYIIGNILGKK AAAQQTNDIIGFIEQNIPNNFGIYYREPSNLGISFKTCRQATPLIKAAIHKELNEGLLTKFAAAIGVQSDQSHMLSQRLK VMTGDTLKYLQREQQDIHEWMKQAMLLNANRESYDDWREKFSLSRIYPNLVSMHAIRGLFQKSFSYLVAGEMAAHMMPIL QSVFFALVVSMIFIVFPMGLLPGGYNILKTWILLIIWVSSWPVFFTIIHCLGMISLSSKSGAFGSDYGLNMLSQGSFAEM ILYSYATFQMLASSIPMLSWSVIKACAHATANLASQFSPIQVASSLGSNIVDNNLSMDNYSIGNRTISQQNLAPSLDMTD SIINYGSYKIITGNNGEQFVIQTVDSLGNNFRSSALLQTGYQNQFTRSQSILDSLTQKEANLISTGNSMAIDIGRRLTHD EALSIGLTESEYQALQEVGSSSISTTEHTGSSYSKSTSTSTSAGAGVWKFDSRVSGGDTEEETQGKSANQQQSHSEALSK IQSAVQEGKFSSTNSEVKSLSENLSANLSEQQSVGQEIAKTKQEMEQLTHSINYVFQNSATIDRNINELVLNEIIAQNPE IRSKEQAARWIMYHSAEAEKIALEVAKINNKVPNEIPKDLNDHINDGNFSTKKDLQNTFEKNVEQLQAEASNIHNNSNVV HVQNIEQTFSDNEKVKTLDKIPDNIKTEAQKIQKKFSDTTDSTVLMAGNQALENLGITKKDKS >Mature_783_residues MFASLSSQTSYFVSKMLENHLLPAYEGLSSRKTGIMFGAKAVAKIRDVQIHDPVTLTNTKEFLRQCFMKPYIIGNILGKK AAAQQTNDIIGFIEQNIPNNFGIYYREPSNLGISFKTCRQATPLIKAAIHKELNEGLLTKFAAAIGVQSDQSHMLSQRLK VMTGDTLKYLQREQQDIHEWMKQAMLLNANRESYDDWREKFSLSRIYPNLVSMHAIRGLFQKSFSYLVAGEMAAHMMPIL QSVFFALVVSMIFIVFPMGLLPGGYNILKTWILLIIWVSSWPVFFTIIHCLGMISLSSKSGAFGSDYGLNMLSQGSFAEM ILYSYATFQMLASSIPMLSWSVIKACAHATANLASQFSPIQVASSLGSNIVDNNLSMDNYSIGNRTISQQNLAPSLDMTD SIINYGSYKIITGNNGEQFVIQTVDSLGNNFRSSALLQTGYQNQFTRSQSILDSLTQKEANLISTGNSMAIDIGRRLTHD EALSIGLTESEYQALQEVGSSSISTTEHTGSSYSKSTSTSTSAGAGVWKFDSRVSGGDTEEETQGKSANQQQSHSEALSK IQSAVQEGKFSSTNSEVKSLSENLSANLSEQQSVGQEIAKTKQEMEQLTHSINYVFQNSATIDRNINELVLNEIIAQNPE IRSKEQAARWIMYHSAEAEKIALEVAKINNKVPNEIPKDLNDHINDGNFSTKKDLQNTFEKNVEQLQAEASNIHNNSNVV HVQNIEQTFSDNEKVKTLDKIPDNIKTEAQKIQKKFSDTTDSTVLMAGNQALENLGITKKDKS
Specific function: Plays a crucial role in donor-recipient cell interactions. Required for two stages of the conjugation process:pilus biosynthesis and mating aggregate stabilization. May interact with traN [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012931 [H]
Pfam domain/function: PF07916 TraG_N [H]
EC number: NA
Molecular weight: Translated: 86839; Mature: 86839
Theoretical pI: Translated: 6.57; Mature: 6.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFASLSSQTSYFVSKMLENHLLPAYEGLSSRKTGIMFGAKAVAKIRDVQIHDPVTLTNTK CCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCEEHHHHHHHHHCEEECCCEEECCHH EFLRQCFMKPYIIGNILGKKAAAQQTNDIIGFIEQNIPNNFGIYYREPSNLGISFKTCRQ HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHH ATPLIKAAIHKELNEGLLTKFAAAIGVQSDQSHMLSQRLKVMTGDTLKYLQREQQDIHEW HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH MKQAMLLNANRESYDDWREKFSLSRIYPNLVSMHAIRGLFQKSFSYLVAGEMAAHMMPIL HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSVFFALVVSMIFIVFPMGLLPGGYNILKTWILLIIWVSSWPVFFTIIHCLGMISLSSKS HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC GAFGSDYGLNMLSQGSFAEMILYSYATFQMLASSIPMLSWSVIKACAHATANLASQFSPI CCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHH QVASSLGSNIVDNNLSMDNYSIGNRTISQQNLAPSLDMTDSIINYGSYKIITGNNGEQFV HHHHHHCCHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHCCCCEEEEECCCCCEEH IQTVDSLGNNFRSSALLQTGYQNQFTRSQSILDSLTQKEANLISTGNSMAIDIGRRLTHD HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHCCCH EALSIGLTESEYQALQEVGSSSISTTEHTGSSYSKSTSTSTSAGAGVWKFDSRVSGGDTE HHHEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC EETQGKSANQQQSHSEALSKIQSAVQEGKFSSTNSEVKSLSENLSANLSEQQSVGQEIAK HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH TKQEMEQLTHSINYVFQNSATIDRNINELVLNEIIAQNPEIRSKEQAARWIMYHSAEAEK HHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHH IALEVAKINNKVPNEIPKDLNDHINDGNFSTKKDLQNTFEKNVEQLQAEASNIHNNSNVV HHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEE HVQNIEQTFSDNEKVKTLDKIPDNIKTEAQKIQKKFSDTTDSTVLMAGNQALENLGITKK EEECHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHCCCCCC DKS CCC >Mature Secondary Structure MFASLSSQTSYFVSKMLENHLLPAYEGLSSRKTGIMFGAKAVAKIRDVQIHDPVTLTNTK CCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCEEHHHHHHHHHCEEECCCEEECCHH EFLRQCFMKPYIIGNILGKKAAAQQTNDIIGFIEQNIPNNFGIYYREPSNLGISFKTCRQ HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHH ATPLIKAAIHKELNEGLLTKFAAAIGVQSDQSHMLSQRLKVMTGDTLKYLQREQQDIHEW HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH MKQAMLLNANRESYDDWREKFSLSRIYPNLVSMHAIRGLFQKSFSYLVAGEMAAHMMPIL HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSVFFALVVSMIFIVFPMGLLPGGYNILKTWILLIIWVSSWPVFFTIIHCLGMISLSSKS HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC GAFGSDYGLNMLSQGSFAEMILYSYATFQMLASSIPMLSWSVIKACAHATANLASQFSPI CCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHH QVASSLGSNIVDNNLSMDNYSIGNRTISQQNLAPSLDMTDSIINYGSYKIITGNNGEQFV HHHHHHCCHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHCCCCEEEEECCCCCEEH IQTVDSLGNNFRSSALLQTGYQNQFTRSQSILDSLTQKEANLISTGNSMAIDIGRRLTHD HHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHCCCH EALSIGLTESEYQALQEVGSSSISTTEHTGSSYSKSTSTSTSAGAGVWKFDSRVSGGDTE HHHEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC EETQGKSANQQQSHSEALSKIQSAVQEGKFSSTNSEVKSLSENLSANLSEQQSVGQEIAK HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH TKQEMEQLTHSINYVFQNSATIDRNINELVLNEIIAQNPEIRSKEQAARWIMYHSAEAEK HHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHH IALEVAKINNKVPNEIPKDLNDHINDGNFSTKKDLQNTFEKNVEQLQAEASNIHNNSNVV HHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEE HVQNIEQTFSDNEKVKTLDKIPDNIKTEAQKIQKKFSDTTDSTVLMAGNQALENLGITKK EEECHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHCCCCCC DKS CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1348105; 7915817 [H]