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The map label for this gene is sodB [H]

Identifier: 189183534

GI number: 189183534

Start: 652927

End: 653568

Strand: Direct

Name: sodB [H]

Synonym: OTT_0627

Alternate gene names: 189183534

Gene position: 652927-653568 (Clockwise)

Preceding gene: 189183533

Following gene: 189183535

Centisome position: 32.5

GC content: 28.82

Gene sequence:

>642_bases
ATGACTTTTTCTAAAACTGCTAATCAAACAGGTTATCCGTTTAAATTAATGGAGTTGCCATATTCTAAAAATTCAATGGA
GCAATATATATCAAGTGAAGCATTTGATTACCATCATGGTAAGCACCATGCTGCTTATGTTAATAACTTAAATCGATTGC
TTGAACATAAAGCTGAACTACAGCAAAAATCGTTAGAAGATATTATCTTAACTTCATTTAATTCCGAAGGAAGCAAAGCT
ATATTTAATAATGCAGCACAAATTTGGAATCATAATTTTTTTTGGCATTCTATATGCAATAATAATGCAACTAAACCTGA
AGGAAATTTTTTACAAAAAATCAATCAGGATTTTGGTAGCTATGAAAATTTTACTAATCAATTTCAAGAGCTAGCACTTG
CACAATTTGGTAGTGGTTGGGTCTGGTTGATATCTGAAAATGGTAAGCTAAAAATTATAACAACATCTAATGCTGAATTG
CCAATAATTTATAATCAAATACCGTTATTAACTTGTGATGTATGGGAACATTCTTATTATATTGATTATCGTAATAATAG
GGCAAAATATTTACAACAGTTTATAGAGCATTTAGCAAATTGGCGATTTGCTGAACAAAATTTTTTGAATTTTATTAAGT
GA

Upstream 100 bases:

>100_bases
GATACTTAATTTATAACAATTTATTGATATATTGATAGCAATAAGAAGATATAATAATATTAATTATATCACATAAATAA
TATATGGAGTATTGTGTAAT

Downstream 100 bases:

>100_bases
ACAAAGTAAAAATAAATTAAGTAGATTAAAAGAGGGCTATGTGAGCAGCTGTAATTCTGTAAATCAAAGTTTTTTATTTA
GGCAAAATGCTGAGTATATT

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MTFSKTANQTGYPFKLMELPYSKNSMEQYISSEAFDYHHGKHHAAYVNNLNRLLEHKAELQQKSLEDIILTSFNSEGSKA
IFNNAAQIWNHNFFWHSICNNNATKPEGNFLQKINQDFGSYENFTNQFQELALAQFGSGWVWLISENGKLKIITTSNAEL
PIIYNQIPLLTCDVWEHSYYIDYRNNRAKYLQQFIEHLANWRFAEQNFLNFIK

Sequences:

>Translated_213_residues
MTFSKTANQTGYPFKLMELPYSKNSMEQYISSEAFDYHHGKHHAAYVNNLNRLLEHKAELQQKSLEDIILTSFNSEGSKA
IFNNAAQIWNHNFFWHSICNNNATKPEGNFLQKINQDFGSYENFTNQFQELALAQFGSGWVWLISENGKLKIITTSNAEL
PIIYNQIPLLTCDVWEHSYYIDYRNNRAKYLQQFIEHLANWRFAEQNFLNFIK
>Mature_212_residues
TFSKTANQTGYPFKLMELPYSKNSMEQYISSEAFDYHHGKHHAAYVNNLNRLLEHKAELQQKSLEDIILTSFNSEGSKAI
FNNAAQIWNHNFFWHSICNNNATKPEGNFLQKINQDFGSYENFTNQFQELALAQFGSGWVWLISENGKLKIITTSNAELP
IIYNQIPLLTCDVWEHSYYIDYRNNRAKYLQQFIEHLANWRFAEQNFLNFIK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=197, Percent_Identity=36.0406091370558, Blast_Score=123, Evalue=1e-28,
Organism=Homo sapiens, GI67782305, Length=197, Percent_Identity=36.0406091370558, Blast_Score=123, Evalue=1e-28,
Organism=Homo sapiens, GI67782309, Length=197, Percent_Identity=30.9644670050761, Blast_Score=92, Evalue=4e-19,
Organism=Escherichia coli, GI1787946, Length=196, Percent_Identity=47.9591836734694, Blast_Score=194, Evalue=3e-51,
Organism=Escherichia coli, GI1790342, Length=203, Percent_Identity=33.4975369458128, Blast_Score=138, Evalue=3e-34,
Organism=Caenorhabditis elegans, GI17569479, Length=199, Percent_Identity=35.1758793969849, Blast_Score=114, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17506561, Length=198, Percent_Identity=37.3737373737374, Blast_Score=114, Evalue=4e-26,
Organism=Saccharomyces cerevisiae, GI6321796, Length=219, Percent_Identity=28.310502283105, Blast_Score=90, Evalue=3e-19,
Organism=Drosophila melanogaster, GI17136812, Length=203, Percent_Identity=35.4679802955665, Blast_Score=106, Evalue=1e-23,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 25051; Mature: 24920

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFSKTANQTGYPFKLMELPYSKNSMEQYISSEAFDYHHGKHHAAYVNNLNRLLEHKAEL
CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
QQKSLEDIILTSFNSEGSKAIFNNAAQIWNHNFFWHSICNNNATKPEGNFLQKINQDFGS
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHCC
YENFTNQFQELALAQFGSGWVWLISENGKLKIITTSNAELPIIYNQIPLLTCDVWEHSYY
HHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEECCCCCEEEECCCCEEEEEECCCEEE
IDYRNNRAKYLQQFIEHLANWRFAEQNFLNFIK
EEECCCHHHHHHHHHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure 
TFSKTANQTGYPFKLMELPYSKNSMEQYISSEAFDYHHGKHHAAYVNNLNRLLEHKAEL
CCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
QQKSLEDIILTSFNSEGSKAIFNNAAQIWNHNFFWHSICNNNATKPEGNFLQKINQDFGS
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHCC
YENFTNQFQELALAQFGSGWVWLISENGKLKIITTSNAELPIIYNQIPLLTCDVWEHSYY
HHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEECCCCCEEEECCCCEEEEEECCCEEE
IDYRNNRAKYLQQFIEHLANWRFAEQNFLNFIK
EEECCCHHHHHHHHHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA