| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is pheT [H]
Identifier: 189183504
GI number: 189183504
Start: 613383
End: 615824
Strand: Direct
Name: pheT [H]
Synonym: OTT_0597
Alternate gene names: 189183504
Gene position: 613383-615824 (Clockwise)
Preceding gene: 189183503
Following gene: 189183511
Centisome position: 30.53
GC content: 30.18
Gene sequence:
>2442_bases ATGAAGTTTACACCAAAATGGTTAAAACAGTTTTTAGTTACTGATGCAAACTTAATCGATATTACTCAAGCATTAACAGA TCTTGGTCTAGAAGTTGAATCAATAATAGATCGTTCTGTTGAATTAAAAGATTTTATTATAGCTGAGATTATAGATATCA AGCCTCATCCTAACGCACAAAAGTTGAAAATTTGCAAAGTTAATTCTGGAACAGAAATATTACAAATTGTCTGTGGAGCA TCAAATGTAAGAGTAGGCCTTAAGGTAGTTCTTGCTGTACCTGGTACTAAAATTCCTAATGGTAATTTTGTAATCAAAGC AACTAGCATTAGGGGGATTACAAGCGATGGAATGTTATGTTCAGAAGAAGAATTACTACTTAATAGTAATGATAATAATA ATGGTATAATGGAATTACCACCTACTGCAACTGTAGGAGATTCATTTACAGCAGCTTTTGGATATGATGATCCAGTTATT CAAATTAATGTTACACCAAATCGCGGAGATTGTTTAGGAATTTATGGCATTGCTAGAGAACTTCATGCTAAAGGATTAGG TAAGCTACAATTAGTAGATGATAATTTTAAAACCTATACTAACGGACATTTTAAAAGCAATATAAAATTGAAGATATCTG CTAAGGATGCTTGCTCATTATTTATTACTACTGAAATTCAAGATATTAATAATGCTTGTAGTACTCCATCTTGGTTGCAA CATTTTTTACGTAATGTTGGTCTTAAATCAATTTCTCCTGTCGTAGATATTACTAATTATATTTGTTATAGTTTTGGTTA CCCAATACATGCTTATGCTAAAGATAAGTTGTCAAACAATGAAATTGAAGTTAGAAAAGCTTATGCAAATGAAAGCATAA TAGCGTTAAATCATCAAAGTTATAAATTAGATACTGCAGATTTAGTTGTAAGTTGTGGTAATAAGGTTATTGCATTAGCT GGTATTATAGGAACATTAGATAGTGAATGTAAGTCTGAAACTAAGAATATAATCTTAGAAACTGGGTACTTTTTGGCAGA TAGTATTATGACTACTGGTCGAAAATTGAATATTGAAAGCGATGCACGTTACCGCTTTGAAAGACAAGTTGATTATAATA TGGCCAGTAAGGTTCATGCTATTGCCTTAAACTTAATTACTTCAATCTGCGGAGGCAAGATTTCAGAAACTGTCCTATAT GATGATGCTACAACAACACCAGCTAAAACCTTAGAGTTTCCAATTAATGAATTTGAAAAGAAAACTGGAATTAGATTAAC AAAGTCAACGATAATAAATATTTTAGGTAATTTGGGATTCACTATTTCCAACATTGCTGATGATACTTCTAGTATTTTGA AACTTGAAATACCATCATGGCGTTCTGATATTGCAATTAAAGAAGATATAGTAGAAGAATTATTAAGAGTATATGGCTAT AAATTTCTGCCTGAGGTACCAATTAAGAGGAATAACCAATCATTTACAGCATTACCTAGTAAGCAACAAAACATTTTAAC AATCAAAAGAGTTGCTGCTGCATGTGGATATAATGAAGTGATCACTTGGTCATTTATGAATAGCAAAATAGTTAAATATT TTAGTACTTATAATGAGGAATTAAAAATTTTAAATCCTATAAGTCAAGAGCTTGATTATATGCGGCCTACAATTATTCCT AATTTACTTGAAGCAATAGCAAAAAATCAAGCAAGATCACTTAAAAATCAAGCTTTTTTTGAAATCGGACCAGTTTTTTC TAAAACAGAGACATGCAATGAACAATGCATGCTTGCTGCTGTAAAATGCGGTAATAAGGAATTAATGCATCCGCATAGCT CAATATCACAGTGGGATATTTTTGATATAAAAGCTGATTTAGAGGTTATACTACTTGAGTTAGGAATCAATATTGCAAAT TGCAAAATTATTGGTACTCCTGCCCAGGAATATTACCATCCTGGTAGATTTGGTAGCATTATGCTAGGTAAAACTTGTAT TGGATGTTTTGGTGAAATTCATCCTGAAATTTTATCTCAAGTTAATTTTTGTGGAATTAATATTACAAATAGAGTTATTG CATTAGAGCTAAATATTGATTCGTTACCAATAAAAAAATCTCAATATGGTTATAAAAAACCAATTATGATATCTAATTAT CAGCATATTGAACGAGATTTTGCATTTGTAATGGACAAATGTATACCAGCATCAGAAATAGTAACATCTATTAAGGAAGT TAACAAACATTTAATTAAAACAGTTGAAGTATTTGATGTATATACCGGAGATAAAATAGATAATAATAAAAAATCCTTAG CTCTTAGAGTTACAATACAATCTAATGATCAAACCTTAACTGAACCAATAATAAAAGAACTTAGCAACAATATAATATCA AAGATAGAAAAGAAATTTAATGCGGTATTGAGAGATCATTAG
Upstream 100 bases:
>100_bases TTACTGACTTAAGAAAATTCTTTGAAAATGATCAGAGGTGGTTACAGCATTATAGCTTTTCAGCATTTAATATACCTACA ATATTACATGGTCTAAGCAG
Downstream 100 bases:
>100_bases CTATTAAAAGTCGTATTCTCTACTATTTAACATAACAAGCTTTAACTCTTGCAAGGACTAAGAAATAAAATTTCTTAGTC CTATTATTATTCAACTACTT
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 813; Mature: 813
Protein sequence:
>813_residues MKFTPKWLKQFLVTDANLIDITQALTDLGLEVESIIDRSVELKDFIIAEIIDIKPHPNAQKLKICKVNSGTEILQIVCGA SNVRVGLKVVLAVPGTKIPNGNFVIKATSIRGITSDGMLCSEEELLLNSNDNNNGIMELPPTATVGDSFTAAFGYDDPVI QINVTPNRGDCLGIYGIARELHAKGLGKLQLVDDNFKTYTNGHFKSNIKLKISAKDACSLFITTEIQDINNACSTPSWLQ HFLRNVGLKSISPVVDITNYICYSFGYPIHAYAKDKLSNNEIEVRKAYANESIIALNHQSYKLDTADLVVSCGNKVIALA GIIGTLDSECKSETKNIILETGYFLADSIMTTGRKLNIESDARYRFERQVDYNMASKVHAIALNLITSICGGKISETVLY DDATTTPAKTLEFPINEFEKKTGIRLTKSTIINILGNLGFTISNIADDTSSILKLEIPSWRSDIAIKEDIVEELLRVYGY KFLPEVPIKRNNQSFTALPSKQQNILTIKRVAAACGYNEVITWSFMNSKIVKYFSTYNEELKILNPISQELDYMRPTIIP NLLEAIAKNQARSLKNQAFFEIGPVFSKTETCNEQCMLAAVKCGNKELMHPHSSISQWDIFDIKADLEVILLELGINIAN CKIIGTPAQEYYHPGRFGSIMLGKTCIGCFGEIHPEILSQVNFCGINITNRVIALELNIDSLPIKKSQYGYKKPIMISNY QHIERDFAFVMDKCIPASEIVTSIKEVNKHLIKTVEVFDVYTGDKIDNNKKSLALRVTIQSNDQTLTEPIIKELSNNIIS KIEKKFNAVLRDH
Sequences:
>Translated_813_residues MKFTPKWLKQFLVTDANLIDITQALTDLGLEVESIIDRSVELKDFIIAEIIDIKPHPNAQKLKICKVNSGTEILQIVCGA SNVRVGLKVVLAVPGTKIPNGNFVIKATSIRGITSDGMLCSEEELLLNSNDNNNGIMELPPTATVGDSFTAAFGYDDPVI QINVTPNRGDCLGIYGIARELHAKGLGKLQLVDDNFKTYTNGHFKSNIKLKISAKDACSLFITTEIQDINNACSTPSWLQ HFLRNVGLKSISPVVDITNYICYSFGYPIHAYAKDKLSNNEIEVRKAYANESIIALNHQSYKLDTADLVVSCGNKVIALA GIIGTLDSECKSETKNIILETGYFLADSIMTTGRKLNIESDARYRFERQVDYNMASKVHAIALNLITSICGGKISETVLY DDATTTPAKTLEFPINEFEKKTGIRLTKSTIINILGNLGFTISNIADDTSSILKLEIPSWRSDIAIKEDIVEELLRVYGY KFLPEVPIKRNNQSFTALPSKQQNILTIKRVAAACGYNEVITWSFMNSKIVKYFSTYNEELKILNPISQELDYMRPTIIP NLLEAIAKNQARSLKNQAFFEIGPVFSKTETCNEQCMLAAVKCGNKELMHPHSSISQWDIFDIKADLEVILLELGINIAN CKIIGTPAQEYYHPGRFGSIMLGKTCIGCFGEIHPEILSQVNFCGINITNRVIALELNIDSLPIKKSQYGYKKPIMISNY QHIERDFAFVMDKCIPASEIVTSIKEVNKHLIKTVEVFDVYTGDKIDNNKKSLALRVTIQSNDQTLTEPIIKELSNNIIS KIEKKFNAVLRDH >Mature_813_residues MKFTPKWLKQFLVTDANLIDITQALTDLGLEVESIIDRSVELKDFIIAEIIDIKPHPNAQKLKICKVNSGTEILQIVCGA SNVRVGLKVVLAVPGTKIPNGNFVIKATSIRGITSDGMLCSEEELLLNSNDNNNGIMELPPTATVGDSFTAAFGYDDPVI QINVTPNRGDCLGIYGIARELHAKGLGKLQLVDDNFKTYTNGHFKSNIKLKISAKDACSLFITTEIQDINNACSTPSWLQ HFLRNVGLKSISPVVDITNYICYSFGYPIHAYAKDKLSNNEIEVRKAYANESIIALNHQSYKLDTADLVVSCGNKVIALA GIIGTLDSECKSETKNIILETGYFLADSIMTTGRKLNIESDARYRFERQVDYNMASKVHAIALNLITSICGGKISETVLY DDATTTPAKTLEFPINEFEKKTGIRLTKSTIINILGNLGFTISNIADDTSSILKLEIPSWRSDIAIKEDIVEELLRVYGY KFLPEVPIKRNNQSFTALPSKQQNILTIKRVAAACGYNEVITWSFMNSKIVKYFSTYNEELKILNPISQELDYMRPTIIP NLLEAIAKNQARSLKNQAFFEIGPVFSKTETCNEQCMLAAVKCGNKELMHPHSSISQWDIFDIKADLEVILLELGINIAN CKIIGTPAQEYYHPGRFGSIMLGKTCIGCFGEIHPEILSQVNFCGINITNRVIALELNIDSLPIKKSQYGYKKPIMISNY QHIERDFAFVMDKCIPASEIVTSIKEVNKHLIKTVEVFDVYTGDKIDNNKKSLALRVTIQSNDQTLTEPIIKELSNNIIS KIEKKFNAVLRDH
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788006, Length=822, Percent_Identity=32.6034063260341, Blast_Score=419, Evalue=1e-118,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR005728 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 90619; Mature: 90619
Theoretical pI: Translated: 6.85; Mature: 6.85
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFTPKWLKQFLVTDANLIDITQALTDLGLEVESIIDRSVELKDFIIAEIIDIKPHPNAQ CCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHEECCCCCCCC KLKICKVNSGTEILQIVCGASNVRVGLKVVLAVPGTKIPNGNFVIKATSIRGITSDGMLC EEEEEEECCCHHHHHEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCEE SEEELLLNSNDNNNGIMELPPTATVGDSFTAAFGYDDPVIQINVTPNRGDCLGIYGIARE CCCCEEEECCCCCCCEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEHHHHHHH LHAKGLGKLQLVDDNFKTYTNGHFKSNIKLKISAKDACSLFITTEIQDINNACSTPSWLQ HHHCCCCEEEEECCCCCCCCCCEEECEEEEEEECCCCEEEEEEEEHHHHHCCCCCHHHHH HFLRNVGLKSISPVVDITNYICYSFGYPIHAYAKDKLSNNEIEVRKAYANESIIALNHQS HHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEECCCC YKLDTADLVVSCGNKVIALAGIIGTLDSECKSETKNIILETGYFLADSIMTTGRKLNIES EECCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCEEECCC DARYRFERQVDYNMASKVHAIALNLITSICGGKISETVLYDDATTTPAKTLEFPINEFEK CCCEEEHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEECCHHHHHH KTGIRLTKSTIINILGNLGFTISNIADDTSSILKLEIPSWRSDIAIKEDIVEELLRVYGY HCCCEEHHHHHHHHHHHCCEEEHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC KFLPEVPIKRNNQSFTALPSKQQNILTIKRVAAACGYNEVITWSFMNSKIVKYFSTYNEE CCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHCCCC LKILNPISQELDYMRPTIIPNLLEAIAKNQARSLKNQAFFEIGPVFSKTETCNEQCMLAA CEEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCHHHEEHE VKCGNKELMHPHSSISQWDIFDIKADLEVILLELGINIANCKIIGTPAQEYYHPGRFGSI ECCCCHHHCCCCCCCCCCEEEEECCCHHEEEEECCCCEEEEEEECCCHHHHCCCCCCCCE MLGKTCIGCFGEIHPEILSQVNFCGINITNRVIALELNIDSLPIKKSQYGYKKPIMISNY EHHHHHHHHHHHCCHHHHCCCCCCEEEECCEEEEEEECCCCCCCCCCCCCCCCCEEECCH QHIERDFAFVMDKCIPASEIVTSIKEVNKHLIKTVEVFDVYTGDKIDNNKKSLALRVTIQ HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEEEEEEE SNDQTLTEPIIKELSNNIISKIEKKFNAVLRDH CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKFTPKWLKQFLVTDANLIDITQALTDLGLEVESIIDRSVELKDFIIAEIIDIKPHPNAQ CCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHEECCCCCCCC KLKICKVNSGTEILQIVCGASNVRVGLKVVLAVPGTKIPNGNFVIKATSIRGITSDGMLC EEEEEEECCCHHHHHEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCEE SEEELLLNSNDNNNGIMELPPTATVGDSFTAAFGYDDPVIQINVTPNRGDCLGIYGIARE CCCCEEEECCCCCCCEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEHHHHHHH LHAKGLGKLQLVDDNFKTYTNGHFKSNIKLKISAKDACSLFITTEIQDINNACSTPSWLQ HHHCCCCEEEEECCCCCCCCCCEEECEEEEEEECCCCEEEEEEEEHHHHHCCCCCHHHHH HFLRNVGLKSISPVVDITNYICYSFGYPIHAYAKDKLSNNEIEVRKAYANESIIALNHQS HHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEECCCC YKLDTADLVVSCGNKVIALAGIIGTLDSECKSETKNIILETGYFLADSIMTTGRKLNIES EECCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCEEECCC DARYRFERQVDYNMASKVHAIALNLITSICGGKISETVLYDDATTTPAKTLEFPINEFEK CCCEEEHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEECCHHHHHH KTGIRLTKSTIINILGNLGFTISNIADDTSSILKLEIPSWRSDIAIKEDIVEELLRVYGY HCCCEEHHHHHHHHHHHCCEEEHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC KFLPEVPIKRNNQSFTALPSKQQNILTIKRVAAACGYNEVITWSFMNSKIVKYFSTYNEE CCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHCCCC LKILNPISQELDYMRPTIIPNLLEAIAKNQARSLKNQAFFEIGPVFSKTETCNEQCMLAA CEEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCHHHEEHE VKCGNKELMHPHSSISQWDIFDIKADLEVILLELGINIANCKIIGTPAQEYYHPGRFGSI ECCCCHHHCCCCCCCCCCEEEEECCCHHEEEEECCCCEEEEEEECCCHHHHCCCCCCCCE MLGKTCIGCFGEIHPEILSQVNFCGINITNRVIALELNIDSLPIKKSQYGYKKPIMISNY EHHHHHHHHHHHCCHHHHCCCCCCEEEECCEEEEEEECCCCCCCCCCCCCCCCCEEECCH QHIERDFAFVMDKCIPASEIVTSIKEVNKHLIKTVEVFDVYTGDKIDNNKKSLALRVTIQ HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEEEEEEE SNDQTLTEPIIKELSNNIISKIEKKFNAVLRDH CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA