| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is polA [H]
Identifier: 189183413
GI number: 189183413
Start: 525584
End: 528253
Strand: Direct
Name: polA [H]
Synonym: OTT_0506
Alternate gene names: 189183413
Gene position: 525584-528253 (Clockwise)
Preceding gene: 189183412
Following gene: 189183414
Centisome position: 26.16
GC content: 30.22
Gene sequence:
>2670_bases ATGTGTTCATTTAAAAACAAAAAAATATTCTTACTTGATGGCTATCCATTCATTTTTAGAGGATATTTTGTTAATCAAGA CCTTATATCCCATAATGGAACTCCAATTGGTGGAGTATATGGATTTACTACAATGATCATGAATATCATTAATGAATTTA ATCCTGAATACATGGTTGTAGTGTTTGATACTGGAGTAGATAATTTTCGTCATAAAATTTATCCTGAGTATAAAAATCAT AGGCCAGAATTACCTTCTGAGCTAAAAATACAATTTCCATTAGTTAGGGAGATTGTAAAATATCTAAATATTAGTGCAAT TGAAATGGAAGGTGTGGAAGCAGATGATGTTATTGCTTCCTTGGCTAATAAATTTGGCAATGCTTCAGATGAAATTATTA TTGTTTCATCTGATAAGGACCTATTACAATTAGTTAATAATAAAGTTTACATATATGATCCAATAAAAAAGCAATATATA AGAGAAAAAGAAACTATAGAAAAGTTAGGAGTTAGACCTTCTCAAGTAAGAGATTTTCTGTCATTAACTGGGGATGTATC TGATAATATTCCAGGAATTCCTGGAATTGGCCCTAAGACTGCTATTAAACTGCTGGAACAGTTTGATAGCTTAAATAATA TTTTGCATAATTATGCGAATATCGCTTCACCTAGACATAGAAAACTTATAGAAGAGCATCGTCAGCTAGCAGAATTGTCA TGGCAATTAGTTGGGCTAAAACAAGACTTAAATCTTAACTTGTCTGTTGAGAATCTACGCTGGTCTCCTCCAAATGCTGA ACAAATACGCACACTAATTCATAAATTTGGATTTACATCGCTCATTACAAAAGCTTCTAAGCTTTTTAAGCTTGAATTAA GTCATCTTGTTGCAAAGTATCCCCTTTCTAGAGCTAGCAATATTAGCAAAATAGAAATTACTAACTCTGAAATATTGCTA CAGGTAAAAAGTAGAGCTCAAGAAAGTGGTTATCTTTCTGTTTTATTAGAGAAAGAAAAAAATGATTATATAAGTATAAC ATTTTCTTTAGATTTGCATAAGTTATATTTTATTGACTTAACAGCAATTACATCTAAAGAACAGAACTATGCAACAGAAA CTAATCCATGGTGGAAATCATCAATCATTGAGCTTTTGCTTGATAGTTCCATTCAAAAAATTACTTATAATCTTAAGGAA TTGTTAATATTTTTATTAAACTTTTTGCGCACTGAAATTACATCAGCTAGTTGTATAGATGATATAATGTTAATGCATTA TATTTTATCAGCTGGCAAAAACGAGCTTTCTTTGAATGAAATTATACAAACCTATAATAAATCTTATTCAGAACAATATT CAGAACACAAAGTTTGCTGGCTAAAAAATACTTTCGATAATTTAATGTCAGAGTTGTTTAAGAATAAGCTATTGCATTGT TATTATGAAATAGATCTGCCAATATGCTATATATTACGTAATATAGAAAATAATGGAATTAAAATTAATGTACCTTTGCT AAAAGACTTGTCAGCTCAGTTAAAGCATAAAATTGATCTGCTTGAGCAGCACATTTATCAAATTTGTGGTCAAGAATTTA ACATCGCTTCTCCAAAACAATTGGGAGAAATATTATTTGACGTTTTAAAGCTACCTCATGCTAAAGTTTCTCAAAAAACT AAATCTTACTCTACAGATTCAGAAGTGCTAGAAAATTTAAGTCGTGCTGGAATTAAGATAGCAGATCTACTATTAAAATG GCGCCAATTAACAAAACTGTTAACTACATATATAGATACGTTACCAACTCAAATTAATAACAACACTTTCAGAGTACATA CCACTTTGCTACAAACATCTACTACCACAAGTAGATTAAGCTCGCATTCACCTAATTTACAAAATATTCCAATAAGATCA GAATATGGATTGAAGGTAAGGTCAGCATTTGTAGCGCCTCCAGGCTCTAAAATTTTATCTGCGGATTATTCTCAAATAGA ATTACGCATACTTAGTTATTTTGCTAATATAGAACAGTTAAAGAATGTTTTTATTATGGGCGAAGACATTCACAGTAGTA CTGCTGCTCAGATCTTTAAGATTAATGCTGATCAAGTAACAGAAGAGAATAGAAGAAAAGCTAAAGCAATAAATTTTGGT ATAATTTACGGTATCAGTGCTTTTGGACTAGCAAAACAGTTAAATATTAGCAATACAGAAGCAGCACAATATATTAATCA TTACTTTCAAGAATATCCAGCTATAAGACAATATATGCATGAAACAAAAAAATTTGCAGTTGAGCATGGTTATGTCAAGA ACATGATAGGTAGAAGATGTTATATTCCATTAATCAATAGTTCTAATTTAACAACAAGAAATTTTGCTCAACGAGCTGCA ATTAATGCTCCAATTCAAAGTACTGCTTCTGACATAGCAAAAATTGCTATGATTCAATATGAAAAACTCATATATTCTAA ATACCCAGCAATAAAATTATTATTACAGGTTCATGATGAATTAGTTTTTGAATTACCTGAAGAGTTAGTAGATACTGCAT GCAATTTAATAAAAAGCACCATGGAAAACATACCGTACTTCTCTTTTCCATTAAAAGTTGAGTTAAAAATTGGAGATAAC TGGGGAGAGATGCAAAAGGTGAAACTTTAA
Upstream 100 bases:
>100_bases TAGAGTAAAAATTTTTACTTTTTCTACAGATACAAGTATGTTTAAAATAACAATCTTTGTATCAATTCATAAAACTTACC AATACAACAATATAAACTTT
Downstream 100 bases:
>100_bases TAAACAGTTGGCAAAATTGAACATATTATTATATTAATACGCAAAAAATATTAGGAAAACATGTTATGCCACAGGCTATT GTAGCATTGGTAGGAAAGCC
Product: DNA polymerase I
Products: NA
Alternate protein names: POL I [H]
Number of amino acids: Translated: 889; Mature: 889
Protein sequence:
>889_residues MCSFKNKKIFLLDGYPFIFRGYFVNQDLISHNGTPIGGVYGFTTMIMNIINEFNPEYMVVVFDTGVDNFRHKIYPEYKNH RPELPSELKIQFPLVREIVKYLNISAIEMEGVEADDVIASLANKFGNASDEIIIVSSDKDLLQLVNNKVYIYDPIKKQYI REKETIEKLGVRPSQVRDFLSLTGDVSDNIPGIPGIGPKTAIKLLEQFDSLNNILHNYANIASPRHRKLIEEHRQLAELS WQLVGLKQDLNLNLSVENLRWSPPNAEQIRTLIHKFGFTSLITKASKLFKLELSHLVAKYPLSRASNISKIEITNSEILL QVKSRAQESGYLSVLLEKEKNDYISITFSLDLHKLYFIDLTAITSKEQNYATETNPWWKSSIIELLLDSSIQKITYNLKE LLIFLLNFLRTEITSASCIDDIMLMHYILSAGKNELSLNEIIQTYNKSYSEQYSEHKVCWLKNTFDNLMSELFKNKLLHC YYEIDLPICYILRNIENNGIKINVPLLKDLSAQLKHKIDLLEQHIYQICGQEFNIASPKQLGEILFDVLKLPHAKVSQKT KSYSTDSEVLENLSRAGIKIADLLLKWRQLTKLLTTYIDTLPTQINNNTFRVHTTLLQTSTTTSRLSSHSPNLQNIPIRS EYGLKVRSAFVAPPGSKILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQVTEENRRKAKAINFG IIYGISAFGLAKQLNISNTEAAQYINHYFQEYPAIRQYMHETKKFAVEHGYVKNMIGRRCYIPLINSSNLTTRNFAQRAA INAPIQSTASDIAKIAMIQYEKLIYSKYPAIKLLLQVHDELVFELPEELVDTACNLIKSTMENIPYFSFPLKVELKIGDN WGEMQKVKL
Sequences:
>Translated_889_residues MCSFKNKKIFLLDGYPFIFRGYFVNQDLISHNGTPIGGVYGFTTMIMNIINEFNPEYMVVVFDTGVDNFRHKIYPEYKNH RPELPSELKIQFPLVREIVKYLNISAIEMEGVEADDVIASLANKFGNASDEIIIVSSDKDLLQLVNNKVYIYDPIKKQYI REKETIEKLGVRPSQVRDFLSLTGDVSDNIPGIPGIGPKTAIKLLEQFDSLNNILHNYANIASPRHRKLIEEHRQLAELS WQLVGLKQDLNLNLSVENLRWSPPNAEQIRTLIHKFGFTSLITKASKLFKLELSHLVAKYPLSRASNISKIEITNSEILL QVKSRAQESGYLSVLLEKEKNDYISITFSLDLHKLYFIDLTAITSKEQNYATETNPWWKSSIIELLLDSSIQKITYNLKE LLIFLLNFLRTEITSASCIDDIMLMHYILSAGKNELSLNEIIQTYNKSYSEQYSEHKVCWLKNTFDNLMSELFKNKLLHC YYEIDLPICYILRNIENNGIKINVPLLKDLSAQLKHKIDLLEQHIYQICGQEFNIASPKQLGEILFDVLKLPHAKVSQKT KSYSTDSEVLENLSRAGIKIADLLLKWRQLTKLLTTYIDTLPTQINNNTFRVHTTLLQTSTTTSRLSSHSPNLQNIPIRS EYGLKVRSAFVAPPGSKILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQVTEENRRKAKAINFG IIYGISAFGLAKQLNISNTEAAQYINHYFQEYPAIRQYMHETKKFAVEHGYVKNMIGRRCYIPLINSSNLTTRNFAQRAA INAPIQSTASDIAKIAMIQYEKLIYSKYPAIKLLLQVHDELVFELPEELVDTACNLIKSTMENIPYFSFPLKVELKIGDN WGEMQKVKL >Mature_889_residues MCSFKNKKIFLLDGYPFIFRGYFVNQDLISHNGTPIGGVYGFTTMIMNIINEFNPEYMVVVFDTGVDNFRHKIYPEYKNH RPELPSELKIQFPLVREIVKYLNISAIEMEGVEADDVIASLANKFGNASDEIIIVSSDKDLLQLVNNKVYIYDPIKKQYI REKETIEKLGVRPSQVRDFLSLTGDVSDNIPGIPGIGPKTAIKLLEQFDSLNNILHNYANIASPRHRKLIEEHRQLAELS WQLVGLKQDLNLNLSVENLRWSPPNAEQIRTLIHKFGFTSLITKASKLFKLELSHLVAKYPLSRASNISKIEITNSEILL QVKSRAQESGYLSVLLEKEKNDYISITFSLDLHKLYFIDLTAITSKEQNYATETNPWWKSSIIELLLDSSIQKITYNLKE LLIFLLNFLRTEITSASCIDDIMLMHYILSAGKNELSLNEIIQTYNKSYSEQYSEHKVCWLKNTFDNLMSELFKNKLLHC YYEIDLPICYILRNIENNGIKINVPLLKDLSAQLKHKIDLLEQHIYQICGQEFNIASPKQLGEILFDVLKLPHAKVSQKT KSYSTDSEVLENLSRAGIKIADLLLKWRQLTKLLTTYIDTLPTQINNNTFRVHTTLLQTSTTTSRLSSHSPNLQNIPIRS EYGLKVRSAFVAPPGSKILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQVTEENRRKAKAINFG IIYGISAFGLAKQLNISNTEAAQYINHYFQEYPAIRQYMHETKKFAVEHGYVKNMIGRRCYIPLINSSNLTTRNFAQRAA INAPIQSTASDIAKIAMIQYEKLIYSKYPAIKLLLQVHDELVFELPEELVDTACNLIKSTMENIPYFSFPLKVELKIGDN WGEMQKVKL
Specific function: In addition to polymerase activity, this DNA polymerase 5' to 3' exonuclease activity [H]
COG id: COG0749
COG function: function code L; DNA polymerase I - 3'-5' exonuclease and polymerase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 5'-3' exonuclease domain [H]
Homologues:
Organism=Homo sapiens, GI139394648, Length=667, Percent_Identity=27.5862068965517, Blast_Score=213, Evalue=7e-55, Organism=Homo sapiens, GI112420958, Length=450, Percent_Identity=30.4444444444444, Blast_Score=201, Evalue=4e-51, Organism=Escherichia coli, GI1790294, Length=944, Percent_Identity=34.8516949152542, Blast_Score=521, Evalue=1e-149, Organism=Escherichia coli, GI226510970, Length=214, Percent_Identity=34.1121495327103, Blast_Score=130, Evalue=5e-31, Organism=Caenorhabditis elegans, GI86563272, Length=410, Percent_Identity=28.2926829268293, Blast_Score=162, Evalue=6e-40, Organism=Drosophila melanogaster, GI17933644, Length=447, Percent_Identity=32.662192393736, Blast_Score=203, Evalue=5e-52,
Paralogues:
None
Copy number: 400 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020046 - InterPro: IPR020045 - InterPro: IPR002421 - InterPro: IPR020047 - InterPro: IPR019760 - InterPro: IPR001098 - InterPro: IPR018320 - InterPro: IPR002298 - InterPro: IPR008918 - InterPro: IPR012337 [H]
Pfam domain/function: PF01367 5_3_exonuc; PF02739 5_3_exonuc_N; PF00476 DNA_pol_A [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 101943; Mature: 101943
Theoretical pI: Translated: 8.17; Mature: 8.17
Prosite motif: PS00447 DNA_POLYMERASE_A
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCSFKNKKIFLLDGYPFIFRGYFVNQDLISHNGTPIGGVYGFTTMIMNIINEFNPEYMVV CCCCCCCEEEEECCCHHHHEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE VFDTGVDNFRHKIYPEYKNHRPELPSELKIQFPLVREIVKYLNISAIEMEGVEADDVIAS EEECCCCHHHHHCCCCHHCCCCCCCCCCEEECHHHHHHHHHHCCCEEEECCCCHHHHHHH LANKFGNASDEIIIVSSDKDLLQLVNNKVYIYDPIKKQYIREKETIEKLGVRPSQVRDFL HHHHHCCCCCCEEEEECCHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHH SLTGDVSDNIPGIPGIGPKTAIKLLEQFDSLNNILHNYANIASPRHRKLIEEHRQLAELS HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH WQLVGLKQDLNLNLSVENLRWSPPNAEQIRTLIHKFGFTSLITKASKLFKLELSHLVAKY HHHEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC PLSRASNISKIEITNSEILLQVKSRAQESGYLSVLLEKEKNDYISITFSLDLHKLYFIDL CCHHCCCCCEEEECCCHHHHEEHHHCCCCCCEEEEEEECCCCEEEEEEEEEEEEEEEEEE TAITSKEQNYATETNPWWKSSIIELLLDSSIQKITYNLKELLIFLLNFLRTEITSASCID EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH DIMLMHYILSAGKNELSLNEIIQTYNKSYSEQYSEHKVCWLKNTFDNLMSELFKNKLLHC HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHEEE YYEIDLPICYILRNIENNGIKINVPLLKDLSAQLKHKIDLLEQHIYQICGQEFNIASPKQ EEEECCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH LGEILFDVLKLPHAKVSQKTKSYSTDSEVLENLSRAGIKIADLLLKWRQLTKLLTTYIDT HHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH LPTQINNNTFRVHTTLLQTSTTTSRLSSHSPNLQNIPIRSEYGLKVRSAFVAPPGSKILS CCHHCCCCEEEEEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHH ADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQVTEENRRKAKAINFG CCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHEEECCHHHHHHHHHHHHHHCCCH IIYGISAFGLAKQLNISNTEAAQYINHYFQEYPAIRQYMHETKKFAVEHGYVKNMIGRRC HEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCEE YIPLINSSNLTTRNFAQRAAINAPIQSTASDIAKIAMIQYEKLIYSKYPAIKLLLQVHDE EEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LVFELPEELVDTACNLIKSTMENIPYFSFPLKVELKIGDNWGEMQKVKL HHHHCHHHHHHHHHHHHHHHHHHCCEEECCEEEEEEECCCCCCCCCCCC >Mature Secondary Structure MCSFKNKKIFLLDGYPFIFRGYFVNQDLISHNGTPIGGVYGFTTMIMNIINEFNPEYMVV CCCCCCCEEEEECCCHHHHEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE VFDTGVDNFRHKIYPEYKNHRPELPSELKIQFPLVREIVKYLNISAIEMEGVEADDVIAS EEECCCCHHHHHCCCCHHCCCCCCCCCCEEECHHHHHHHHHHCCCEEEECCCCHHHHHHH LANKFGNASDEIIIVSSDKDLLQLVNNKVYIYDPIKKQYIREKETIEKLGVRPSQVRDFL HHHHHCCCCCCEEEEECCHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHH SLTGDVSDNIPGIPGIGPKTAIKLLEQFDSLNNILHNYANIASPRHRKLIEEHRQLAELS HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH WQLVGLKQDLNLNLSVENLRWSPPNAEQIRTLIHKFGFTSLITKASKLFKLELSHLVAKY HHHEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC PLSRASNISKIEITNSEILLQVKSRAQESGYLSVLLEKEKNDYISITFSLDLHKLYFIDL CCHHCCCCCEEEECCCHHHHEEHHHCCCCCCEEEEEEECCCCEEEEEEEEEEEEEEEEEE TAITSKEQNYATETNPWWKSSIIELLLDSSIQKITYNLKELLIFLLNFLRTEITSASCID EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH DIMLMHYILSAGKNELSLNEIIQTYNKSYSEQYSEHKVCWLKNTFDNLMSELFKNKLLHC HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHEEE YYEIDLPICYILRNIENNGIKINVPLLKDLSAQLKHKIDLLEQHIYQICGQEFNIASPKQ EEEECCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH LGEILFDVLKLPHAKVSQKTKSYSTDSEVLENLSRAGIKIADLLLKWRQLTKLLTTYIDT HHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH LPTQINNNTFRVHTTLLQTSTTTSRLSSHSPNLQNIPIRSEYGLKVRSAFVAPPGSKILS CCHHCCCCEEEEEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHH ADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQVTEENRRKAKAINFG CCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHEEECCHHHHHHHHHHHHHHCCCH IIYGISAFGLAKQLNISNTEAAQYINHYFQEYPAIRQYMHETKKFAVEHGYVKNMIGRRC HEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCEE YIPLINSSNLTTRNFAQRAAINAPIQSTASDIAKIAMIQYEKLIYSKYPAIKLLLQVHDE EEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LVFELPEELVDTACNLIKSTMENIPYFSFPLKVELKIGDNWGEMQKVKL HHHHCHHHHHHHHHHHHHHHHHHCCEEECCEEEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA