Click here to switch to the map view.

The map label for this gene is trbC [C]

Identifier: 189183396

GI number: 189183396

Start: 507496

End: 507816

Strand: Direct

Name: trbC [C]

Synonym: OTT_0489

Alternate gene names: 189183396

Gene position: 507496-507816 (Clockwise)

Preceding gene: 189183395

Following gene: 189183397

Centisome position: 25.26

GC content: 31.15

Gene sequence:

>321_bases
TTGGATCAGCAAAAAACTTTTATTTTTGTCTCATTTTCAATGAGTGATGAGGCTTTAAAAAGCTATTTTGCTGATTCTCA
AAAGGCTGGAGCTCAATTAGTTATGCGTGGGTTAATTAATAACTCATTTACACAAACAAAGAATAAAACTATGGAGCTTG
GTATTAGCTTCGATATAGATCCTAGCTTGTTTGAACAATATAAAATTGATGTTGTACCAGTAATAGTAATAGATGATAAA
AAAAGAGGATTAACCAAGAAATTAACTGGGCACATTCCTTTAGCAAGTGCATTAGAAATTATGAATGAGAATACTCCATG
A

Upstream 100 bases:

>100_bases
TTGCTGTTTGCTTTGATTTATAAAGCTTGGAGAGGAATATGGTTATACGAGTAATGATGTTGATGGTTTTATTATTTGTT
AATAATGCTAATGCTTTTTT

Downstream 100 bases:

>100_bases
GATTATTATCTATATTAACTTTAATAACGCTCAATATTAGCTGTTGTTTAGCTTCAATGCAGAACGACTATAATGAAGCT
AAAAACTATAATGTAAATCT

Product: putative conjugative transfer protein TrbC

Products: NA

Alternate protein names: Conjugative Transfer Protein

Number of amino acids: Translated: 106; Mature: 106

Protein sequence:

>106_residues
MDQQKTFIFVSFSMSDEALKSYFADSQKAGAQLVMRGLINNSFTQTKNKTMELGISFDIDPSLFEQYKIDVVPVIVIDDK
KRGLTKKLTGHIPLASALEIMNENTP

Sequences:

>Translated_106_residues
MDQQKTFIFVSFSMSDEALKSYFADSQKAGAQLVMRGLINNSFTQTKNKTMELGISFDIDPSLFEQYKIDVVPVIVIDDK
KRGLTKKLTGHIPLASALEIMNENTP
>Mature_106_residues
MDQQKTFIFVSFSMSDEALKSYFADSQKAGAQLVMRGLINNSFTQTKNKTMELGISFDIDPSLFEQYKIDVVPVIVIDDK
KRGLTKKLTGHIPLASALEIMNENTP

Specific function: Essential For F Plasmid Conjugative Transfer, Participates In F-Pilus Assembly. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11891; Mature: 11891

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQQKTFIFVSFSMSDEALKSYFADSQKAGAQLVMRGLINNSFTQTKNKTMELGISFDID
CCCCCEEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCC
PSLFEQYKIDVVPVIVIDDKKRGLTKKLTGHIPLASALEIMNENTP
HHHHHHCCCEEEEEEEECCCCCCCCHHHCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MDQQKTFIFVSFSMSDEALKSYFADSQKAGAQLVMRGLINNSFTQTKNKTMELGISFDID
CCCCCEEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCC
PSLFEQYKIDVVPVIVIDDKKRGLTKKLTGHIPLASALEIMNENTP
HHHHHHCCCEEEEEEEECCCCCCCCHHHCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA