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The map label for this gene is traC [H]

Identifier: 189183393

GI number: 189183393

Start: 503622

End: 505409

Strand: Direct

Name: traC [H]

Synonym: OTT_0486

Alternate gene names: 189183393

Gene position: 503622-505409 (Clockwise)

Preceding gene: 189183392

Following gene: 189183395

Centisome position: 25.07

GC content: 36.47

Gene sequence:

>1788_bases
GTGAACGCAAGCATACATAAGGATTTTGATCGAGAAAGATTTTCTAAACACTTTGTCTATGAATCATATGATGATGAGAC
TCAGCTATTCTTTAATCGTGGTTCAATAGGCTTTGTATTGCTTGCATGCCCATTGGCTGAAGCTAGTGTTTCTGCTCAAA
ATGAAATTGCTGAATTTCTGAAAAGCGATGAAAATTTACCTGCTGAAAGTAGCCTGCAAGTATTGATGATTGGTAGTAAT
AATATAGAGAATTTTTTAAGCAACTGGCAGTCATATTGTAAAGGAGAGATATTTATTGAGTTAGCAAATAAAAGAACAGA
GTTTTTGCGTGATCAAGCTCAAAAAGTAGGTTCTATAAAGGATGTAGTATTGTTAATTTCAGTTACTATACCTAATTTAA
ATGCAAATATCGATGATATGATTCGCAGACGAGATGCTTTAAAAGATACGTTTAGGTCAATTGGATTAAGCACTGAAAAT
GTGAATGCGCAGCAATTATTAAAGTTTCTGAGAGTAATATTTGGCTGGCCTGAAGAAGAACATTCAAATATTAACCAGTA
TGAAATATTGTCTGAACAAATTCTAAGTGGAGATTTTTCGTTATTTGAGAATGATGATTGTGTAAATGTAAATGATGATC
AAATATTTATCAGTCTAGAAGCAAGAAAGAGGCCTGCAGAGTGGAAATTATCTGCTATGGATCTGTTTTTAGGTAATGAA
ATGCGTCGTGATGAATATATAAAATCAAATTTCCTGATTCATTTTGGTCTGCAAATTTTACCAAATCAAGCGATGGAAAG
GACTGCTGCCATAACTAAAAGAGAAGCGCTAGAAAGAAATATTAATGCGGGAATGGGTAAATTTTTTCCTGACATACAAC
AAGAAGCTGCTGATTTAGCTGGTGTAGTAGCTGCTTTACAGAGTGGTGATAGAGTCGTTAATATTCACTTCAATGTTATT
ATGTTTGACAAAATAAAAAAAGCTAAGCAATCTGCATCGGCCTTTTGTTCGATGTTAAGGCGCAGTGGATGGTATTTTGT
GCCATGTAAATATGATCATGTGGCCGTGTTACTAGCTGCACTACCAATGCAATTAGTTGAACAAGGCCCAAAAGGTATAT
TGGGTCAAAAAACATCAGGAGTTGGAGTAGCACTTTCTAGCTTAGGTAGAGGCATAAAAACTGTTTCTGTAGAGAGTAAA
GTATTATTGCCAATCATTGGTGAATGGAAAGGTGATTTAAGCTCTCCAGGTATGTTGCTAGCTGGAAGACGAGGTCAAAT
AATGTACTGGTCGCCTTTTGGTGGAGCTTTATTACCTGCATTAAATAAGCATGGGGTAGCTCCAAATGAGAACTTTAACC
TTTGTATAGCTGGAGTTCCAGGGTCTGGAAAATCTGTTTTTATGCAAGAATTAATGCTATCAGTTCTAGGAGTTGGTGGG
AAAGTTTTTGCTCTTGATTACGGAAGATCATTTAAGCGTACATGCTTGATTCTAGGAAGCAGCTACATAGAATTTGACAT
GAAAAATCCTGTATCAATTAATCCATTTTCCGAAGTGCCAGAAGATGATAGTGCAAAGTCTATAGAGGCTAGATCCGACT
TTTTATCTAACTTTCCATCCATTTTAGCTACTATGGCTGCACCTCAGTATGGAACAAGCGATCTACAGCAACCAATGCTA
CAGAGTGCTTTAACACTTGCGCTACTCTCCCTCATATATAGCATATGCTCCTTCAAGTTCAGCTTCAGCCTCAGCTTCTG
CTGTGTCATTATGCTGAAGTTTTGTTAA

Upstream 100 bases:

>100_bases
AGGCAAGCTAAAGCTATTCAAAGCGTAGCTGTTGTTAATAAGTCGCCGAAAAAACCAAAAAAATATCTTATTAATTTATT
TAAATCAAAACAGAGTCAAG

Downstream 100 bases:

>100_bases
ATCAGTATTACTTAAATTCTCCAATATCATCATCCTTACTTCTGGTGGCAAGTGAAGCCAAGATATCTGACTTTCTTGAT
TAGCATCCTGATTGGATTCA

Product: putative conjugative transfer protein TraC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 595; Mature: 595

Protein sequence:

>595_residues
MNASIHKDFDRERFSKHFVYESYDDETQLFFNRGSIGFVLLACPLAEASVSAQNEIAEFLKSDENLPAESSLQVLMIGSN
NIENFLSNWQSYCKGEIFIELANKRTEFLRDQAQKVGSIKDVVLLISVTIPNLNANIDDMIRRRDALKDTFRSIGLSTEN
VNAQQLLKFLRVIFGWPEEEHSNINQYEILSEQILSGDFSLFENDDCVNVNDDQIFISLEARKRPAEWKLSAMDLFLGNE
MRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREALERNINAGMGKFFPDIQQEAADLAGVVAALQSGDRVVNIHFNVI
MFDKIKKAKQSASAFCSMLRRSGWYFVPCKYDHVAVLLAALPMQLVEQGPKGILGQKTSGVGVALSSLGRGIKTVSVESK
VLLPIIGEWKGDLSSPGMLLAGRRGQIMYWSPFGGALLPALNKHGVAPNENFNLCIAGVPGSGKSVFMQELMLSVLGVGG
KVFALDYGRSFKRTCLILGSSYIEFDMKNPVSINPFSEVPEDDSAKSIEARSDFLSNFPSILATMAAPQYGTSDLQQPML
QSALTLALLSLIYSICSFKFSFSLSFCCVIMLKFC

Sequences:

>Translated_595_residues
MNASIHKDFDRERFSKHFVYESYDDETQLFFNRGSIGFVLLACPLAEASVSAQNEIAEFLKSDENLPAESSLQVLMIGSN
NIENFLSNWQSYCKGEIFIELANKRTEFLRDQAQKVGSIKDVVLLISVTIPNLNANIDDMIRRRDALKDTFRSIGLSTEN
VNAQQLLKFLRVIFGWPEEEHSNINQYEILSEQILSGDFSLFENDDCVNVNDDQIFISLEARKRPAEWKLSAMDLFLGNE
MRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREALERNINAGMGKFFPDIQQEAADLAGVVAALQSGDRVVNIHFNVI
MFDKIKKAKQSASAFCSMLRRSGWYFVPCKYDHVAVLLAALPMQLVEQGPKGILGQKTSGVGVALSSLGRGIKTVSVESK
VLLPIIGEWKGDLSSPGMLLAGRRGQIMYWSPFGGALLPALNKHGVAPNENFNLCIAGVPGSGKSVFMQELMLSVLGVGG
KVFALDYGRSFKRTCLILGSSYIEFDMKNPVSINPFSEVPEDDSAKSIEARSDFLSNFPSILATMAAPQYGTSDLQQPML
QSALTLALLSLIYSICSFKFSFSLSFCCVIMLKFC
>Mature_595_residues
MNASIHKDFDRERFSKHFVYESYDDETQLFFNRGSIGFVLLACPLAEASVSAQNEIAEFLKSDENLPAESSLQVLMIGSN
NIENFLSNWQSYCKGEIFIELANKRTEFLRDQAQKVGSIKDVVLLISVTIPNLNANIDDMIRRRDALKDTFRSIGLSTEN
VNAQQLLKFLRVIFGWPEEEHSNINQYEILSEQILSGDFSLFENDDCVNVNDDQIFISLEARKRPAEWKLSAMDLFLGNE
MRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREALERNINAGMGKFFPDIQQEAADLAGVVAALQSGDRVVNIHFNVI
MFDKIKKAKQSASAFCSMLRRSGWYFVPCKYDHVAVLLAALPMQLVEQGPKGILGQKTSGVGVALSSLGRGIKTVSVESK
VLLPIIGEWKGDLSSPGMLLAGRRGQIMYWSPFGGALLPALNKHGVAPNENFNLCIAGVPGSGKSVFMQELMLSVLGVGG
KVFALDYGRSFKRTCLILGSSYIEFDMKNPVSINPFSEVPEDDSAKSIEARSDFLSNFPSILATMAAPQYGTSDLQQPML
QSALTLALLSLIYSICSFKFSFSLSFCCVIMLKFC

Specific function: Required for the assembly of mature F-pilin subunits into extended F pili [H]

COG id: COG3451

COG function: function code U; Type IV secretory pathway, VirB4 components

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002789
- InterPro:   IPR014117 [H]

Pfam domain/function: PF01935 DUF87 [H]

EC number: NA

Molecular weight: Translated: 66179; Mature: 66179

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNASIHKDFDRERFSKHFVYESYDDETQLFFNRGSIGFVLLACPLAEASVSAQNEIAEFL
CCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHCCHHHHHHHHH
KSDENLPAESSLQVLMIGSNNIENFLSNWQSYCKGEIFIELANKRTEFLRDQAQKVGSIK
HCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCHH
DVVLLISVTIPNLNANIDDMIRRRDALKDTFRSIGLSTENVNAQQLLKFLRVIFGWPEEE
HEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHH
HSNINQYEILSEQILSGDFSLFENDDCVNVNDDQIFISLEARKRPAEWKLSAMDLFLGNE
HCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCH
MRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREALERNINAGMGKFFPDIQQEAADLA
HHHHHHHHHCEEEEECHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHH
GVVAALQSGDRVVNIHFNVIMFDKIKKAKQSASAFCSMLRRSGWYFVPCKYDHVAVLLAA
HHHHHHHCCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHH
LPMQLVEQGPKGILGQKTSGVGVALSSLGRGIKTVSVESKVLLPIIGEWKGDLSSPGMLL
HHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCEEEEEECCCCCCCCCCCCEEE
AGRRGQIMYWSPFGGALLPALNKHGVAPNENFNLCIAGVPGSGKSVFMQELMLSVLGVGG
ECCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCC
KVFALDYGRSFKRTCLILGSSYIEFDMKNPVSINPFSEVPEDDSAKSIEARSDFLSNFPS
EEEEEECCCCCCCEEEEECCCEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHH
ILATMAAPQYGTSDLQQPMLQSALTLALLSLIYSICSFKFSFSLSFCCVIMLKFC
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNASIHKDFDRERFSKHFVYESYDDETQLFFNRGSIGFVLLACPLAEASVSAQNEIAEFL
CCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHCCHHHHHHHHH
KSDENLPAESSLQVLMIGSNNIENFLSNWQSYCKGEIFIELANKRTEFLRDQAQKVGSIK
HCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCHH
DVVLLISVTIPNLNANIDDMIRRRDALKDTFRSIGLSTENVNAQQLLKFLRVIFGWPEEE
HEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHH
HSNINQYEILSEQILSGDFSLFENDDCVNVNDDQIFISLEARKRPAEWKLSAMDLFLGNE
HCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCH
MRRDEYIKSNFLIHFGLQILPNQAMERTAAITKREALERNINAGMGKFFPDIQQEAADLA
HHHHHHHHHCEEEEECHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHH
GVVAALQSGDRVVNIHFNVIMFDKIKKAKQSASAFCSMLRRSGWYFVPCKYDHVAVLLAA
HHHHHHHCCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHH
LPMQLVEQGPKGILGQKTSGVGVALSSLGRGIKTVSVESKVLLPIIGEWKGDLSSPGMLL
HHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCEEEEEECCCCCCCCCCCCEEE
AGRRGQIMYWSPFGGALLPALNKHGVAPNENFNLCIAGVPGSGKSVFMQELMLSVLGVGG
ECCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCC
KVFALDYGRSFKRTCLILGSSYIEFDMKNPVSINPFSEVPEDDSAKSIEARSDFLSNFPS
EEEEEECCCCCCCEEEEECCCEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHH
ILATMAAPQYGTSDLQQPMLQSALTLALLSLIYSICSFKFSFSLSFCCVIMLKFC
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2265751; 7915817; 1355084 [H]