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The map label for this gene is rlpA [C]

Identifier: 189026216

GI number: 189026216

Start: 1078749

End: 1079705

Strand: Reverse

Name: rlpA [C]

Synonym: TPASS_0993

Alternate gene names: 189026216

Gene position: 1079705-1078749 (Counterclockwise)

Preceding gene: 189026219

Following gene: 189026212

Centisome position: 94.76

GC content: 58.2

Gene sequence:

>957_bases
ATGATGGACAAGCGTGTCGTTGCAGTGGCTGCAGTATTGTGGAACGTGCAGATGCTTTTTGCAGCCGGCGAGGTAATCGT
TCCGGAAGGGTATGCTTCCTACTATGCGGAGTCTTTTAACGGAAGACCTACCGCAAGTGGGGAGATTTTTGACATGAACG
CGTATACTGCCGCGCACCGCACGCTTCCCTTTGGTACGGTTGTGGAGTTGACGAACTTGGACAACGGCAAAAAGGTAATC
GTGCGCATCAATGATCGGGGACCTTACGCTGCAAATAGAGAGATTGACGTGTCAAAGGCTGCAGCTGTTGCGTTAGACAT
GCTGAACGCGGGGGTGGCGCGCGTCTCCATACACAAGGCAGATCCGAATGCGCACGCTTCACAGCAACGCAACGATAGGC
AGACTTCTCCTGGTGTCTTACCTCAAGATTCCTTTGGTGTTCCGCCTACTGCTCCCACGTCCAGTGCGCCTGTCATGTAT
GCGGATCCTCATAATCCACCGCCAGCTCCTGTCGGAAGGAGGGCTGGAACTCCGGGTGTGCCGGGAGTGGCGAATACAAC
GGATGTCCCCGCTTCGGAGTATGGTGCGCCGCCTGTCGCGTACGCAGCACCGGGTTCGACTCCCAGTCGGGTTCCCTATG
GGACGGCCGTGCCTGGCTCCGCTGCACCTAACTCGCACGCGCAGCCTGTTCCTTCGTCTTCTTCCTATGCGGCTGCTGCG
CCTCTTCCCTACGCAGCTGGTGGCGGGAAGGTGTCAGGGATGAAGTCGGTGTATACGCCAACCCATTCGGGGGAAACGCG
GGGGGTGCTTTGGCGTATACAGTTGGGAGCCTTTGTTCGTGAGGAGAATGCGCTCCGCTTGGTAGTTAAGTGCGCGAGGC
GGGCTTTGATCCTTCATATGAGCGAACAGAGCACGCGGTGCGCGTGGTGCTGCCGGGGATACGCCCCGCGGACCTAG

Upstream 100 bases:

>100_bases
CTTAAAAGATTTCAACCTTTTTGTCCATATTCCGATAAGCGTCGGGGGTGTCTTGTGAAGCATCGTTTTGCTCGGGTGAA
GCCTTTGGAAGGAGTGTTGA

Downstream 100 bases:

>100_bases
AGAGGGTAAAGCACGCGCTGAAAAGGGGAAGGTTTCACGATTACGTTATCCGCCAGGAAAGTTGGTAGTGGGAAATCCTG
CACCCCCTCAGGCTAAGCCT

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MMDKRVVAVAAVLWNVQMLFAAGEVIVPEGYASYYAESFNGRPTASGEIFDMNAYTAAHRTLPFGTVVELTNLDNGKKVI
VRINDRGPYAANREIDVSKAAAVALDMLNAGVARVSIHKADPNAHASQQRNDRQTSPGVLPQDSFGVPPTAPTSSAPVMY
ADPHNPPPAPVGRRAGTPGVPGVANTTDVPASEYGAPPVAYAAPGSTPSRVPYGTAVPGSAAPNSHAQPVPSSSSYAAAA
PLPYAAGGGKVSGMKSVYTPTHSGETRGVLWRIQLGAFVREENALRLVVKCARRALILHMSEQSTRCAWCCRGYAPRT

Sequences:

>Translated_318_residues
MMDKRVVAVAAVLWNVQMLFAAGEVIVPEGYASYYAESFNGRPTASGEIFDMNAYTAAHRTLPFGTVVELTNLDNGKKVI
VRINDRGPYAANREIDVSKAAAVALDMLNAGVARVSIHKADPNAHASQQRNDRQTSPGVLPQDSFGVPPTAPTSSAPVMY
ADPHNPPPAPVGRRAGTPGVPGVANTTDVPASEYGAPPVAYAAPGSTPSRVPYGTAVPGSAAPNSHAQPVPSSSSYAAAA
PLPYAAGGGKVSGMKSVYTPTHSGETRGVLWRIQLGAFVREENALRLVVKCARRALILHMSEQSTRCAWCCRGYAPRT
>Mature_318_residues
MMDKRVVAVAAVLWNVQMLFAAGEVIVPEGYASYYAESFNGRPTASGEIFDMNAYTAAHRTLPFGTVVELTNLDNGKKVI
VRINDRGPYAANREIDVSKAAAVALDMLNAGVARVSIHKADPNAHASQQRNDRQTSPGVLPQDSFGVPPTAPTSSAPVMY
ADPHNPPPAPVGRRAGTPGVPGVANTTDVPASEYGAPPVAYAAPGSTPSRVPYGTAVPGSAAPNSHAQPVPSSSSYAAAA
PLPYAAGGGKVSGMKSVYTPTHSGETRGVLWRIQLGAFVREENALRLVVKCARRALILHMSEQSTRCAWCCRGYAPRT

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family

Homologues:

Organism=Escherichia coli, GI1786852, Length=300, Percent_Identity=31, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RLPA_TREPA (O83958)

Other databases:

- EMBL:   AE000520
- PIR:   A71257
- RefSeq:   NP_219430.1
- ProteinModelPortal:   O83958
- IntAct:   O83958
- GeneID:   2611282
- GenomeReviews:   AE000520_GR
- KEGG:   tpa:TP0993
- NMPDR:   fig|243276.1.peg.988
- TIGR:   TP_0993
- HOGENOM:   HBG251105
- OMA:   VNDRGPM
- ProtClustDB:   CLSK382641
- BioCyc:   TPAL243276:TP_0993-MONOMER
- InterPro:   IPR009009
- InterPro:   IPR012997
- TIGRFAMs:   TIGR00413

Pfam domain/function: PF03330 DPBB_1; SSF50685 Barwin_like

EC number: NA

Molecular weight: Translated: 33376; Mature: 33376

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDKRVVAVAAVLWNVQMLFAAGEVIVPEGYASYYAESFNGRPTASGEIFDMNAYTAAHR
CCCHHHHHHHHHHHHHHHEECCCCEEECCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHH
TLPFGTVVELTNLDNGKKVIVRINDRGPYAANREIDVSKAAAVALDMLNAGVARVSIHKA
CCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEC
DPNAHASQQRNDRQTSPGVLPQDSFGVPPTAPTSSAPVMYADPHNPPPAPVGRRAGTPGV
CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
PGVANTTDVPASEYGAPPVAYAAPGSTPSRVPYGTAVPGSAAPNSHAQPVPSSSSYAAAA
CCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
PLPYAAGGGKVSGMKSVYTPTHSGETRGVLWRIQLGAFVREENALRLVVKCARRALILHM
CCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEEEEECEEEECCCHHHHHHHHHHHEEEEEE
SEQSTRCAWCCRGYAPRT
CCCCCCCHHHCCCCCCCC
>Mature Secondary Structure
MMDKRVVAVAAVLWNVQMLFAAGEVIVPEGYASYYAESFNGRPTASGEIFDMNAYTAAHR
CCCHHHHHHHHHHHHHHHEECCCCEEECCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHH
TLPFGTVVELTNLDNGKKVIVRINDRGPYAANREIDVSKAAAVALDMLNAGVARVSIHKA
CCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEC
DPNAHASQQRNDRQTSPGVLPQDSFGVPPTAPTSSAPVMYADPHNPPPAPVGRRAGTPGV
CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
PGVANTTDVPASEYGAPPVAYAAPGSTPSRVPYGTAVPGSAAPNSHAQPVPSSSSYAAAA
CCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
PLPYAAGGGKVSGMKSVYTPTHSGETRGVLWRIQLGAFVREENALRLVVKCARRALILHM
CCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEEEEECEEEECCCHHHHHHHHHHHEEEEEE
SEQSTRCAWCCRGYAPRT
CCCCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9665876