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The map label for this gene is rbfA

Identifier: 189026113

GI number: 189026113

Start: 968837

End: 969217

Strand: Reverse

Name: rbfA

Synonym: TPASS_0890

Alternate gene names: 189026113

Gene position: 969217-968837 (Counterclockwise)

Preceding gene: 189026114

Following gene: 189026112

Centisome position: 85.06

GC content: 49.08

Gene sequence:

>381_bases
ATGAAACAGGTAAGTCAGTTAAGGGTGCGCAAATTGGGGGAGCATATCCGCGCAGAAATAGCGCAGCTTATTATGCTCGG
CAAAATAAAGGATCCACGTGTTTCTCCCTTTCTCTCTGTGAATTGGGTGGATGTGTCTGGGGGGATGGTCTGTGCGCGGG
TATATGTGTCGAGTTTTATGGGTAAGTACAAAACGAAGCAGGGAGTGCAAGGCTTAGAAAGCGCGGCAGGTTTTATTCGC
TCTGTCTTGGCTAAGAAACTCCGTCTGCGGCAGTGTCCGCGTCTTAGCTTTGTGTATGACGAGAGTGTGAGGGATGGATT
TTCTCTTTCGAGAAAAATAGATCGGTTAGAATCCGGCGGTGTGCAGACTGAGCATGCCTGA

Upstream 100 bases:

>100_bases
TTGATTTTAGGGAGCGTGATCGGCTTGAATGCGCGGAGATGAAGGAGGTGTCGAGGAAACTGAAGGATGCCGCTCTTTCC
GATGCGGCGCGCTTACAGGG

Downstream 100 bases:

>100_bases
CGCTATTGTTCCTTTCGCAAAGGTTTCCGGTCTTACGAGTTTTGCGGCACTGGCACAGGTCAGGCGTCTTCTGGGAGTAA
AAAAGGTAGGGCATACGGGG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MKQVSQLRVRKLGEHIRAEIAQLIMLGKIKDPRVSPFLSVNWVDVSGGMVCARVYVSSFMGKYKTKQGVQGLESAAGFIR
SVLAKKLRLRQCPRLSFVYDESVRDGFSLSRKIDRLESGGVQTEHA

Sequences:

>Translated_126_residues
MKQVSQLRVRKLGEHIRAEIAQLIMLGKIKDPRVSPFLSVNWVDVSGGMVCARVYVSSFMGKYKTKQGVQGLESAAGFIR
SVLAKKLRLRQCPRLSFVYDESVRDGFSLSRKIDRLESGGVQTEHA
>Mature_126_residues
MKQVSQLRVRKLGEHIRAEIAQLIMLGKIKDPRVSPFLSVNWVDVSGGMVCARVYVSSFMGKYKTKQGVQGLESAAGFIR
SVLAKKLRLRQCPRLSFVYDESVRDGFSLSRKIDRLESGGVQTEHA

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=105, Percent_Identity=39.0476190476191, Blast_Score=76, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_TREPA (O83860)

Other databases:

- EMBL:   AE000520
- PIR:   G71269
- RefSeq:   NP_219325.1
- ProteinModelPortal:   O83860
- GeneID:   2611714
- GenomeReviews:   AE000520_GR
- KEGG:   tpa:TP0890
- NMPDR:   fig|243276.1.peg.884
- TIGR:   TP_0890
- HOGENOM:   HBG751055
- OMA:   INAKVFI
- ProtClustDB:   CLSK218911
- BioCyc:   TPAL243276:TP_0890-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14128; Mature: 14128

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQVSQLRVRKLGEHIRAEIAQLIMLGKIKDPRVSPFLSVNWVDVSGGMVCARVYVSSFM
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHH
GKYKTKQGVQGLESAAGFIRSVLAKKLRLRQCPRLSFVYDESVRDGFSLSRKIDRLESGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHCCC
VQTEHA
CCCCCC
>Mature Secondary Structure
MKQVSQLRVRKLGEHIRAEIAQLIMLGKIKDPRVSPFLSVNWVDVSGGMVCARVYVSSFM
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHH
GKYKTKQGVQGLESAAGFIRSVLAKKLRLRQCPRLSFVYDESVRDGFSLSRKIDRLESGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHCCC
VQTEHA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876