Click here to switch to the map view.

The map label for this gene is ycdC [C]

Identifier: 188586555

GI number: 188586555

Start: 2045217

End: 2045801

Strand: Reverse

Name: ycdC [C]

Synonym: Nther_1941

Alternate gene names: 188586555

Gene position: 2045801-2045217 (Counterclockwise)

Preceding gene: 188586556

Following gene: 188586554

Centisome position: 64.63

GC content: 33.33

Gene sequence:

>585_bases
TTGTCAAAAATTGACAAAAGCAATAAGAGAATGGATATTTTAGTGGCTGCGGCGAAAGTTTTTAGTGAAGAAAACTTCTA
TCAAGTAAAGGTTCAGGAGATAGCTGATGCAGCAGGGATAGGCAAGGGTACGATTTATGAATATTTTAATAGCAAAGAGG
AACTGTTTCATGAAATGCTTAGAGAAGGTTTTAAGCAGTATTATCAAGTAGTAAGAATAGATCCAAATGATGAACGCAGT
ATTTGGATAAAATTAGAGGAATTTTTGAAAAACAATGTTTATTTTGTTTCAGAGAATAGACAAATAGCGTATTTATTGCT
AAGCAATAATCATCCATTTCAACAAAAATTGACCTCTCAGATAATGGAAGTTAGAAAAAGTTTGCTACATGATATGGAAC
AGACTTTTCAATTAGCCATCAATGAAGGAGAAATCGAAAAAAAGCCAATAGATTTATTGGCCAGAATTTTCTGGGGAGCT
TTTATGGAGGTCGTTTCGTCTATGATATTACTTGAAGGTAACCCCCCTGATGACGAAACAATCAAGGAAGTTATTGGCAC
ATTTAAAAAAGGATTAGAGATTTGA

Upstream 100 bases:

>100_bases
ATTACTTTAGTGTTAATACCAGTTGTTTATAGCTTGTTTGATGATCTCAGATTAAGATTTCACAGTAAATTAGCACGAAA
AGAAGAGAGTGGTGATTTAA

Downstream 100 bases:

>100_bases
ATAGGGACTTGGTGAAAAAACAACTTTACCTAATAAAACTAGGTTTTGTTAGGTATAAATGTTAAAATATTTCAAGGGAA
ATTTTAATATAAAAACCTTG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MSKIDKSNKRMDILVAAAKVFSEENFYQVKVQEIADAAGIGKGTIYEYFNSKEELFHEMLREGFKQYYQVVRIDPNDERS
IWIKLEEFLKNNVYFVSENRQIAYLLLSNNHPFQQKLTSQIMEVRKSLLHDMEQTFQLAINEGEIEKKPIDLLARIFWGA
FMEVVSSMILLEGNPPDDETIKEVIGTFKKGLEI

Sequences:

>Translated_194_residues
MSKIDKSNKRMDILVAAAKVFSEENFYQVKVQEIADAAGIGKGTIYEYFNSKEELFHEMLREGFKQYYQVVRIDPNDERS
IWIKLEEFLKNNVYFVSENRQIAYLLLSNNHPFQQKLTSQIMEVRKSLLHDMEQTFQLAINEGEIEKKPIDLLARIFWGA
FMEVVSSMILLEGNPPDDETIKEVIGTFKKGLEI
>Mature_193_residues
SKIDKSNKRMDILVAAAKVFSEENFYQVKVQEIADAAGIGKGTIYEYFNSKEELFHEMLREGFKQYYQVVRIDPNDERSI
WIKLEEFLKNNVYFVSENRQIAYLLLSNNHPFQQKLTSQIMEVRKSLLHDMEQTFQLAINEGEIEKKPIDLLARIFWGAF
MEVVSSMILLEGNPPDDETIKEVIGTFKKGLEI

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22637; Mature: 22506

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIDKSNKRMDILVAAAKVFSEENFYQVKVQEIADAAGIGKGTIYEYFNSKEELFHEML
CCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHH
REGFKQYYQVVRIDPNDERSIWIKLEEFLKNNVYFVSENRQIAYLLLSNNHPFQQKLTSQ
HHHHHHHHHEEECCCCCCCEEEEEHHHHHHCCCEEEECCCEEEEEEEECCCCHHHHHHHH
IMEVRKSLLHDMEQTFQLAINEGEIEKKPIDLLARIFWGAFMEVVSSMILLEGNPPDDET
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHH
IKEVIGTFKKGLEI
HHHHHHHHHHCCCC
>Mature Secondary Structure 
SKIDKSNKRMDILVAAAKVFSEENFYQVKVQEIADAAGIGKGTIYEYFNSKEELFHEML
CCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHH
REGFKQYYQVVRIDPNDERSIWIKLEEFLKNNVYFVSENRQIAYLLLSNNHPFQQKLTSQ
HHHHHHHHHEEECCCCCCCEEEEEHHHHHHCCCEEEECCCEEEEEEEECCCCHHHHHHHH
IMEVRKSLLHDMEQTFQLAINEGEIEKKPIDLLARIFWGAFMEVVSSMILLEGNPPDDET
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHH
IKEVIGTFKKGLEI
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA