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The map label for this gene is yqeV [H]

Identifier: 188585813

GI number: 188585813

Start: 1259205

End: 1260545

Strand: Direct

Name: yqeV [H]

Synonym: Nther_1187

Alternate gene names: 188585813

Gene position: 1259205-1260545 (Clockwise)

Preceding gene: 188585812

Following gene: 188585814

Centisome position: 39.78

GC content: 35.27

Gene sequence:

>1341_bases
ATGTCAGACGTACCAAGGGTGAAATTCATTACTTTTGGATGTAAAGTTAATCAGTATGATTCAGAAGCCCTGAAAGAATT
ATTCCAGGACAGGGGATTTGAGATAAGTGATTGGAATCCTCAGGAATTGGATAATATTGATGTGGCTATTATTAACACAT
GTACAGTTACACATTTAGCCGATCGCAAGGCTCGACAGCATATCAGAAAACTCAAGAGGCGAAACCCAAATTGTGTTATA
GCGGTTACTGGCTGTTATCCTCAGACTGATCCTCAAACAGTTAAAGCTTTAGAAGGCGTGGATATTGTCCATGGAATTGA
AGATAGATCAGGTTTAGTTGAACTGGTAGAGCAGGCTTTATCTAAGGAAAACATCTGGCAGGGAGCTATACATCTACATG
ACTCAAGACCAAAGGGAGAATTTGAAAACTTAAAGATCAAAAACTTTAAAAAACATGATAGAACAAGACATTTCTTAAAA
ATACAAGAAGGTTGTGACCAATTTTGTTCTTATTGTATTATCCCTTATGCCAGAGGACATTTGCGAAGTCGCCCGCCAGA
AGATGTTATTTCTGAGATTAAACAGGCAGTTAGTAATGGATTTAAAGAAATAGTACTAACAGGTATAAATCTAGGAGCTT
ATGGCCGTGAAAATTCAAATTTACCCAATTTGGCAACCTTGCTGGATAAAATCATTCACCTAAAGGGGGATTACAGAATA
AGATTGAGCTCTTGTGAACCTCAAGAAATTACTATTGGGTTATTAGAGCTGGTTACTAATTCTGAAAAAATCTGTAAACA
TCTTCATATACCTCTCCAAAGTGGGGATAATGAAATTTTAAAAGCAATGAATAGAGATTATTCAAAAGAAGATTATAGAA
AAATAGTCATGGCTGCTAGGGAAAAGTCTCCTTCCATAGCAATAACCACTGATATAATCGTAGGCTTTCCGGGTGAATCT
GCGAATCACTTTCGAAATACTAAGGAATTTGTCAAAAAGATAGGTTTTTCTGATATTCATATTTTCCAATATTCACCGAG
AAAAAATACACCAGCCCAAGAATTTTCAGACCAAGTGCATAGTAAAGAAAAAAAAGCTCGTAGCCAAGAATTAATTGAGA
TTTCTCGAGATCTTAGCAGAGTTTATCACGAACAGTTTATTGATAAAACTGTTCCTGTATTAGTTGAAAAACATGAAGAG
GATGTTGCTTCTGGGGTCAGTGATACCTATTTAAAAGTAACATTCAATGTGGAATCCGAGATTAATTTATATAACAAAAT
TTGTCAGGTACAAATAAATAGTGCCGATGAAGAAATGGTTTATGGAGAATTACCTGAATAA

Upstream 100 bases:

>100_bases
CTGTGAGTATGGGTCCTAGAATACTAAGAGCTGAAACTGCAGGTATAGTTGCCGTCTCAGCAATTCTATACGAATTAGCA
GATTTGGGAGGAACTGAGCA

Downstream 100 bases:

>100_bases
ACAGGTGGTTGATAAGCAGGGGCAGGTAAATTGAAATGAGTTAGTAATAAATCACCTATCTTGGGCATAAGTTTAAGTGA
GTATTGCTCAAGGTAGGTGA

Product: RNA modification enzyme, MiaB family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 445

Protein sequence:

>446_residues
MSDVPRVKFITFGCKVNQYDSEALKELFQDRGFEISDWNPQELDNIDVAIINTCTVTHLADRKARQHIRKLKRRNPNCVI
AVTGCYPQTDPQTVKALEGVDIVHGIEDRSGLVELVEQALSKENIWQGAIHLHDSRPKGEFENLKIKNFKKHDRTRHFLK
IQEGCDQFCSYCIIPYARGHLRSRPPEDVISEIKQAVSNGFKEIVLTGINLGAYGRENSNLPNLATLLDKIIHLKGDYRI
RLSSCEPQEITIGLLELVTNSEKICKHLHIPLQSGDNEILKAMNRDYSKEDYRKIVMAAREKSPSIAITTDIIVGFPGES
ANHFRNTKEFVKKIGFSDIHIFQYSPRKNTPAQEFSDQVHSKEKKARSQELIEISRDLSRVYHEQFIDKTVPVLVEKHEE
DVASGVSDTYLKVTFNVESEINLYNKICQVQINSADEEMVYGELPE

Sequences:

>Translated_446_residues
MSDVPRVKFITFGCKVNQYDSEALKELFQDRGFEISDWNPQELDNIDVAIINTCTVTHLADRKARQHIRKLKRRNPNCVI
AVTGCYPQTDPQTVKALEGVDIVHGIEDRSGLVELVEQALSKENIWQGAIHLHDSRPKGEFENLKIKNFKKHDRTRHFLK
IQEGCDQFCSYCIIPYARGHLRSRPPEDVISEIKQAVSNGFKEIVLTGINLGAYGRENSNLPNLATLLDKIIHLKGDYRI
RLSSCEPQEITIGLLELVTNSEKICKHLHIPLQSGDNEILKAMNRDYSKEDYRKIVMAAREKSPSIAITTDIIVGFPGES
ANHFRNTKEFVKKIGFSDIHIFQYSPRKNTPAQEFSDQVHSKEKKARSQELIEISRDLSRVYHEQFIDKTVPVLVEKHEE
DVASGVSDTYLKVTFNVESEINLYNKICQVQINSADEEMVYGELPE
>Mature_445_residues
SDVPRVKFITFGCKVNQYDSEALKELFQDRGFEISDWNPQELDNIDVAIINTCTVTHLADRKARQHIRKLKRRNPNCVIA
VTGCYPQTDPQTVKALEGVDIVHGIEDRSGLVELVEQALSKENIWQGAIHLHDSRPKGEFENLKIKNFKKHDRTRHFLKI
QEGCDQFCSYCIIPYARGHLRSRPPEDVISEIKQAVSNGFKEIVLTGINLGAYGRENSNLPNLATLLDKIIHLKGDYRIR
LSSCEPQEITIGLLELVTNSEKICKHLHIPLQSGDNEILKAMNRDYSKEDYRKIVMAAREKSPSIAITTDIIVGFPGESA
NHFRNTKEFVKKIGFSDIHIFQYSPRKNTPAQEFSDQVHSKEKKARSQELIEISRDLSRVYHEQFIDKTVPVLVEKHEED
VASGVSDTYLKVTFNVESEINLYNKICQVQINSADEEMVYGELPE

Specific function: Unknown

COG id: COG0621

COG function: function code J; 2-methylthioadenine synthetase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TRAM domain [H]

Homologues:

Organism=Homo sapiens, GI93277076, Length=388, Percent_Identity=32.2164948453608, Blast_Score=183, Evalue=2e-46,
Organism=Homo sapiens, GI28872784, Length=446, Percent_Identity=28.6995515695067, Blast_Score=175, Evalue=9e-44,
Organism=Homo sapiens, GI28872782, Length=446, Percent_Identity=28.6995515695067, Blast_Score=174, Evalue=1e-43,
Organism=Escherichia coli, GI1786882, Length=398, Percent_Identity=30.4020100502513, Blast_Score=202, Evalue=3e-53,
Organism=Escherichia coli, GI1787057, Length=459, Percent_Identity=26.3616557734205, Blast_Score=145, Evalue=6e-36,
Organism=Caenorhabditis elegans, GI17553146, Length=464, Percent_Identity=26.7241379310345, Blast_Score=184, Evalue=9e-47,
Organism=Caenorhabditis elegans, GI71996771, Length=330, Percent_Identity=31.5151515151515, Blast_Score=133, Evalue=1e-31,
Organism=Drosophila melanogaster, GI21356207, Length=424, Percent_Identity=26.6509433962264, Blast_Score=178, Evalue=8e-45,
Organism=Drosophila melanogaster, GI19922432, Length=444, Percent_Identity=29.7297297297297, Blast_Score=175, Evalue=7e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR020612
- InterPro:   IPR013848
- InterPro:   IPR006467
- InterPro:   IPR007197
- InterPro:   IPR002792 [H]

Pfam domain/function: PF04055 Radical_SAM; PF01938 TRAM; PF00919 UPF0004 [H]

EC number: NA

Molecular weight: Translated: 50977; Mature: 50845

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS01278 UPF0004

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDVPRVKFITFGCKVNQYDSEALKELFQDRGFEISDWNPQELDNIDVAIINTCTVTHLA
CCCCCCEEEEEEECEECCCCHHHHHHHHHHCCCCCCCCCHHHHCCCCEEEEEEEHHHHHH
DRKARQHIRKLKRRNPNCVIAVTGCYPQTDPQTVKALEGVDIVHGIEDRSGLVELVEQAL
HHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHCCCHHHHCCCCCHHHHHHHHHHH
SKENIWQGAIHLHDSRPKGEFENLKIKNFKKHDRTRHFLKIQEGCDQFCSYCIIPYARGH
CCCCCCCCEEEEECCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LRSRPPEDVISEIKQAVSNGFKEIVLTGINLGAYGRENSNLPNLATLLDKIIHLKGDYRI
CCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
RLSSCEPQEITIGLLELVTNSEKICKHLHIPLQSGDNEILKAMNRDYSKEDYRKIVMAAR
EECCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHH
EKSPSIAITTDIIVGFPGESANHFRNTKEFVKKIGFSDIHIFQYSPRKNTPAQEFSDQVH
CCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHH
SKEKKARSQELIEISRDLSRVYHEQFIDKTVPVLVEKHEEDVASGVSDTYLKVTFNVESE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHH
INLYNKICQVQINSADEEMVYGELPE
HHHHHHEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
SDVPRVKFITFGCKVNQYDSEALKELFQDRGFEISDWNPQELDNIDVAIINTCTVTHLA
CCCCCEEEEEEECEECCCCHHHHHHHHHHCCCCCCCCCHHHHCCCCEEEEEEEHHHHHH
DRKARQHIRKLKRRNPNCVIAVTGCYPQTDPQTVKALEGVDIVHGIEDRSGLVELVEQAL
HHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHCCCHHHHCCCCCHHHHHHHHHHH
SKENIWQGAIHLHDSRPKGEFENLKIKNFKKHDRTRHFLKIQEGCDQFCSYCIIPYARGH
CCCCCCCCEEEEECCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LRSRPPEDVISEIKQAVSNGFKEIVLTGINLGAYGRENSNLPNLATLLDKIIHLKGDYRI
CCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
RLSSCEPQEITIGLLELVTNSEKICKHLHIPLQSGDNEILKAMNRDYSKEDYRKIVMAAR
EECCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHH
EKSPSIAITTDIIVGFPGESANHFRNTKEFVKKIGFSDIHIFQYSPRKNTPAQEFSDQVH
CCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHH
SKEKKARSQELIEISRDLSRVYHEQFIDKTVPVLVEKHEEDVASGVSDTYLKVTFNVESE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHH
INLYNKICQVQINSADEEMVYGELPE
HHHHHHEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9023197; 9384377 [H]