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The map label for this gene is grdE [H]

Identifier: 188585670

GI number: 188585670

Start: 1106425

End: 1107711

Strand: Direct

Name: grdE [H]

Synonym: Nther_1043

Alternate gene names: 188585670

Gene position: 1106425-1107711 (Clockwise)

Preceding gene: 188585669

Following gene: 188585671

Centisome position: 34.95

GC content: 40.64

Gene sequence:

>1287_bases
ATGAAACTGACTTTGGAAAAAGTAAGAGTTGATGATTTAGTTTTTGGTGATCACACCATGATTAACGGTACCACTTTAAT
CGTTAACAAAAACGAAATCATTAAAAAAGTTAAGGAAGATGATCGGATTGCTAAAGTAAACATAGACATTGTGAAGCCAG
GTGAATCTGCTCGCTTATTTTCTGTAAGAGATGTAATTGAACCTAGAGTAAAAGTGGACGATACGTGTGAACTGTTTCCT
GGTACGATTGGCAGTGTTGACCAGGTGGGAGAAGGGGTTACCAAAGTGTTTAAAGGTGCAACGATAGTAACCACCGGGAA
AATTGTTGGAGTTAAGGAAGGTATTATAGACATGTCTGGTCCAGGAGCAGAGTACACACCTTTCTCTCATACGAATAACC
TTGTACTAGACTGCGATCCGATTTCTGGCCTGGAAAGTCGCCAGTACGAAGAGGCTTTACGGCTGGCTGGCTTGAAAATC
GCCCATTACATTGGTGAAAAATGTCAAGAGGCGACAGCCCAGGAAAAAGTCGCCTATGAAACGCTACCCATAGATCAACA
GAAGCAAAAGTACCCTGAGCTACCGAAGGTGGGATACATCTATATGCTTCAAAGCCAGGGACTATTACACGATACTTATT
TCTATGGTGTGGACGCTAAAGAGATACTACCTACTTATATTTATCCAACAGAAGTCATGGACGGTGCTATTGTCAACGGA
AATAGTATTATAGCTTGCGACAAGAACACCACCTACCATCATTTGAATAATCCTATCATTGAAGATTTATTTGAATATCA
CGGTAAAGAAATTAATTTCTGCGGGGTCATTATTACAAATGAAAACGTTACTTTAGAGGATAAAGAGCGTTCTTCAAATT
ACACTGCTAAATTGTCGGAGCAATTTGGGTTTGATGGTGTCATCATTTCAAAAGAAGAGTACGGAAACACAGACACCGAT
TTGATTATGAATTGCAAGAAGATTGAGGAAAAGGGGATCAAAACGGTACTTGTAACGGACGAGTATGCAGGCCGGGATGG
TTCTTCCCAATCCCTAGCAGACGCTGACCCGAAAGCAGATGCTGTAGTGACTACTGGAAATGCCAACGAAACGATCATAT
TACCCCCTATGGACAAAATTATTGGTAAAATCGATTCAGAGGATCTGGATGCTGGTAATTATGAAGGGAACCTCAAGCAT
GATCAGAGTATCGAAATAGAGATACAAGCTATTATTGGGGCAACCAATGAATTAGGTTTCAACAAGATGGGTGCAACCGA
ATTCTAA

Upstream 100 bases:

>100_bases
TTTCGTTTGACAAGCATTGCACAATTAATAAGGAATATTTAATTTAAGGTCGAAGAAAAAATCAAAACATATTTAAATGT
TGCTTTGGAGGCGGATAATT

Downstream 100 bases:

>100_bases
ATGATCCATTTAGACTCGGAAAACCTGTCATAAATACTAGTTTACGTTTACCGCCTTCCTTTTTAAGGATGCAGTGTAGT
AATTTAGAGATTATAGGGAG

Product: Sarcosine reductase

Products: NA

Alternate protein names: Selenoprotein PB alpha/beta [H]

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MKLTLEKVRVDDLVFGDHTMINGTTLIVNKNEIIKKVKEDDRIAKVNIDIVKPGESARLFSVRDVIEPRVKVDDTCELFP
GTIGSVDQVGEGVTKVFKGATIVTTGKIVGVKEGIIDMSGPGAEYTPFSHTNNLVLDCDPISGLESRQYEEALRLAGLKI
AHYIGEKCQEATAQEKVAYETLPIDQQKQKYPELPKVGYIYMLQSQGLLHDTYFYGVDAKEILPTYIYPTEVMDGAIVNG
NSIIACDKNTTYHHLNNPIIEDLFEYHGKEINFCGVIITNENVTLEDKERSSNYTAKLSEQFGFDGVIISKEEYGNTDTD
LIMNCKKIEEKGIKTVLVTDEYAGRDGSSQSLADADPKADAVVTTGNANETIILPPMDKIIGKIDSEDLDAGNYEGNLKH
DQSIEIEIQAIIGATNELGFNKMGATEF

Sequences:

>Translated_428_residues
MKLTLEKVRVDDLVFGDHTMINGTTLIVNKNEIIKKVKEDDRIAKVNIDIVKPGESARLFSVRDVIEPRVKVDDTCELFP
GTIGSVDQVGEGVTKVFKGATIVTTGKIVGVKEGIIDMSGPGAEYTPFSHTNNLVLDCDPISGLESRQYEEALRLAGLKI
AHYIGEKCQEATAQEKVAYETLPIDQQKQKYPELPKVGYIYMLQSQGLLHDTYFYGVDAKEILPTYIYPTEVMDGAIVNG
NSIIACDKNTTYHHLNNPIIEDLFEYHGKEINFCGVIITNENVTLEDKERSSNYTAKLSEQFGFDGVIISKEEYGNTDTD
LIMNCKKIEEKGIKTVLVTDEYAGRDGSSQSLADADPKADAVVTTGNANETIILPPMDKIIGKIDSEDLDAGNYEGNLKH
DQSIEIEIQAIIGATNELGFNKMGATEF
>Mature_428_residues
MKLTLEKVRVDDLVFGDHTMINGTTLIVNKNEIIKKVKEDDRIAKVNIDIVKPGESARLFSVRDVIEPRVKVDDTCELFP
GTIGSVDQVGEGVTKVFKGATIVTTGKIVGVKEGIIDMSGPGAEYTPFSHTNNLVLDCDPISGLESRQYEEALRLAGLKI
AHYIGEKCQEATAQEKVAYETLPIDQQKQKYPELPKVGYIYMLQSQGLLHDTYFYGVDAKEILPTYIYPTEVMDGAIVNG
NSIIACDKNTTYHHLNNPIIEDLFEYHGKEINFCGVIITNENVTLEDKERSSNYTAKLSEQFGFDGVIISKEEYGNTDTD
LIMNCKKIEEKGIKTVLVTDEYAGRDGSSQSLADADPKADAVVTTGNANETIILPPMDKIIGKIDSEDLDAGNYEGNLKH
DQSIEIEIQAIIGATNELGFNKMGATEF

Specific function: In the first step of glycine reductase, the substrate is bound to component PB via a Schiff base intermediate. Then the PB- activated substrate is nucleophilically attacked by the selenol anion of component PA to transform it to a carboxymethylated seleno

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016585
- InterPro:   IPR015417 [H]

Pfam domain/function: PF09338 Gly_reductase [H]

EC number: =1.21.4.2 [H]

Molecular weight: Translated: 47221; Mature: 47221

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTLEKVRVDDLVFGDHTMINGTTLIVNKNEIIKKVKEDDRIAKVNIDIVKPGESARLF
CCEEHHHEEECEEEECCCEEECCEEEEEECHHHHHHHHCCCCEEEEEEEEECCCCCCEEE
SVRDVIEPRVKVDDTCELFPGTIGSVDQVGEGVTKVFKGATIVTTGKIVGVKEGIIDMSG
EHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEECEEEEEECCEEECCC
PGAEYTPFSHTNNLVLDCDPISGLESRQYEEALRLAGLKIAHYIGEKCQEATAQEKVAYE
CCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHEEE
TLPIDQQKQKYPELPKVGYIYMLQSQGLLHDTYFYGVDAKEILPTYIYPTEVMDGAIVNG
ECCCCHHHHHCCCCCCCCEEEEEECCCCEEEEEEECCCHHHHCCCEECCHHHCCCEEECC
NSIIACDKNTTYHHLNNPIIEDLFEYHGKEINFCGVIITNENVTLEDKERSSNYTAKLSE
CEEEEECCCCCEEECCCHHHHHHHHHCCCEEEEEEEEEECCCEEECCCCCCCCCEEEEHH
QFGFDGVIISKEEYGNTDTDLIMNCKKIEEKGIKTVLVTDEYAGRDGSSQSLADADPKAD
HCCCCCEEEEHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
AVVTTGNANETIILPPMDKIIGKIDSEDLDAGNYEGNLKHDQSIEIEIQAIIGATNELGF
EEEEECCCCCEEEECCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCC
NKMGATEF
CCCCCCCC
>Mature Secondary Structure
MKLTLEKVRVDDLVFGDHTMINGTTLIVNKNEIIKKVKEDDRIAKVNIDIVKPGESARLF
CCEEHHHEEECEEEECCCEEECCEEEEEECHHHHHHHHCCCCEEEEEEEEECCCCCCEEE
SVRDVIEPRVKVDDTCELFPGTIGSVDQVGEGVTKVFKGATIVTTGKIVGVKEGIIDMSG
EHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEECEEEEEECCEEECCC
PGAEYTPFSHTNNLVLDCDPISGLESRQYEEALRLAGLKIAHYIGEKCQEATAQEKVAYE
CCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHEEE
TLPIDQQKQKYPELPKVGYIYMLQSQGLLHDTYFYGVDAKEILPTYIYPTEVMDGAIVNG
ECCCCHHHHHCCCCCCCCEEEEEECCCCEEEEEEECCCHHHHCCCEECCHHHCCCEEECC
NSIIACDKNTTYHHLNNPIIEDLFEYHGKEINFCGVIITNENVTLEDKERSSNYTAKLSE
CEEEEECCCCCEEECCCHHHHHHHHHCCCEEEEEEEEEECCCEEECCCCCCCCCEEEEHH
QFGFDGVIISKEEYGNTDTDLIMNCKKIEEKGIKTVLVTDEYAGRDGSSQSLADADPKAD
HCCCCCEEEEHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
AVVTTGNANETIILPPMDKIIGKIDSEDLDAGNYEGNLKHDQSIEIEIQAIIGATNELGF
EEEEECCCCCEEEECCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCC
NKMGATEF
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10091582; 8529639 [H]