| Definition | Natranaerobius thermophilus JW/NM-WN-LF, complete genome. |
|---|---|
| Accession | NC_010718 |
| Length | 3,165,557 |
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The map label for this gene is nrdD [H]
Identifier: 188584769
GI number: 188584769
Start: 150060
End: 152270
Strand: Direct
Name: nrdD [H]
Synonym: Nther_0127
Alternate gene names: 188584769
Gene position: 150060-152270 (Clockwise)
Preceding gene: 188584768
Following gene: 188584772
Centisome position: 4.74
GC content: 37.72
Gene sequence:
>2211_bases ATGGAACATAAGGATGTTGCTTTAGTTACTGAAGTTTCTAAGATGCCTACAAAGGTTGTGAAAAGGGATGGCCGTGAACA ACCCTTTGACCCTTCAAAAATAACCAATGCAATCAAAAAAGCTCTTAAGGCTATTGACAAAGAAGATCATTCCCTTGCCC TTTCTTTGACATATCAAGTTATCAATAAATTAACTAAACATGGAGTAGACAAGCCCACAGTACCACAAATCCAAGAGATG GTGGAAAATTCACTTATGGATACCGGTCACTATGAAGTTGCTAGGGCTTATGTCATTTATAGAAACGACCGGGATAGAAT TAGAGAAGCAGATACCAAATTAATGAAAGAGCTATTAAAAGTATTAGAAACCAGGGACCAAGAAAACGCCAATGTGAATG GCGATGCTCCCATGGGCAAAATGTTAAAAGGTGGCTCTGAAGCCATGAAAGAAGTGTATTTAAATCATTTTGCCAAAAAT GAACACTCTCAAGCTCACAGAAATGGGTATATACATATACATGATGCCGATTTTGCTGCTATTGGAACAACCACATGTCT TCAAATTCCATTAGATAGACTGTTAGCAGAAGGATTTAATACAGGACATGGTTGGATTACCACGCCAAAATCAATCGAAT CAGCGGCATCTCTTAGTTGTATAGTGTTCCAGTCCAATCAAAATGATCAACATGGTGGGCAATCATTTGCCACCTTTGAC TCTTCTCTGGCACCTTATGTAAAAATTACTTTTGATAAGATTAAAAATGAGCTTTCCCAATTAGGAATCTCAGAAAATAT CGATGATAAGGCATGGGAACAGGTGAAAAAGCGGACTTATCAGGCTATGCAAATTTTTGTGTTTAATCTTAATACTATGC ACAGTCGAGCAGGTGCTCAAGTGCCTTTTACTTCTGTTAATTTTGGGCTTGATACTAGCCCATGGGGTCGTTTGATTAGC GAAATGCTACTGAAAGTATATAAGAAAGGTTTGGGTAGAGGGGAAACACCAATTTTCCCTAATTTAATTTTTTCCTTGGC AACTGGAGTGAACAAAGAACCAGGGGATCCAAATTACGATTTGCGCCGCTTGGCTCATGAAGTTTCTTGTGAGCGTTTGT TCCCAAACTATTCTAATCAGGATGCCTCTTATAATGCACCCTTTTATTATAGGGAAGAAGATCCTCAAGTAGTAGCTTAT ATGGGCTGTAGGACTCGGGTGATATCAAACAGAAGAGGCCCTGAAGTTACTGAAGGTAGAGGTAACCTTTCTTTTACTTC TATTAATTTACCTAGGATAGCTTTGGAAACAAGCTGTCCGAGTGATTTTTATCAACGGTTAGAAGACACTATTTGGTTGG TTGCAGATCAATTATATGATAGATTTAAAATCCAAAAAAATAAAAAGGCCAAAGAATTTCCTTTTCTTATGGGGCAAGGA CTTTACATGGATAGTGAAGACTTTGAGTCAGAAGAGACTTTAGAAGAAGCTTTGAAACATGGGACTTTATCCATTGGTTT TATTGGACTCGCAGAAGCATTAAAGGCCATGATAGGTGAGCACCATGGTGAATCCGAAGAGGCCTTTAAAAAGGGATTGC AAATTGTTGAATTTATGGACAATATTTGTAAAAAAGCGTCTGAACAGTACAACCTTAATTTCAGTCTCTTAGCTACTCCA GCCGAAGGACTGTCCGGCAGGTTTACAGAGCTTGACAGAGAGACCTTTGGAGAGATAGAAGGGGTTACTGATAAAGAATG GTATACTAATTCATTCCATATTCCTGTTGAGTATTCTATAAGCGCTTATGAAAAAATTAGAAAGGAATCAGCTTTTAACA AATATACTCCTGCAGGTCATATTAATTACGTAGAATTAGATGCTGCTCCTAAAGGCAATATAGATGCCTTTGAACAGCTA GTAAATGCTGCTATGGATAATGACTGTGGATACTTTTCTGTTAACTTTCCTGTAGATCAGTGCTTAAATTGTGCAAATAA TGGAGTGATAGATTCGGAGACATGCCCTGTTTGTGGTTCACGTAGAATTCAAAGAGTAAGAAGAGTTACAGGTTATTTGG GTGTTTTAGAAGAAATCCCCGATGAAGAGGGGGAAGGAAAAACTTCTGGTTTTAATGATGGTAAATATCATGAATGTTTA AATAGAGTCAGTCATCTACAGGGTTTTCAAACAAAAGATGATCAAAATTAA
Upstream 100 bases:
>100_bases TTTTTTGAAATGGGAATGGTATATATAAATATGATAGAATTCATTGGACACATAGAAAATAGATTTAGATAAGTTAACTA AATAAAGGAGAGATGTATTA
Downstream 100 bases:
>100_bases AAACTAGTGAAAGGTTCCCCAGAAACTCTATGGGGAACCTTATTAATTTAGTAGGCTTAGCAAAACAAAACCCATTCTGT TATCTGGTTTTAATTTTTCT
Product: anaerobic ribonucleoside-triphosphate reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 736; Mature: 736
Protein sequence:
>736_residues MEHKDVALVTEVSKMPTKVVKRDGREQPFDPSKITNAIKKALKAIDKEDHSLALSLTYQVINKLTKHGVDKPTVPQIQEM VENSLMDTGHYEVARAYVIYRNDRDRIREADTKLMKELLKVLETRDQENANVNGDAPMGKMLKGGSEAMKEVYLNHFAKN EHSQAHRNGYIHIHDADFAAIGTTTCLQIPLDRLLAEGFNTGHGWITTPKSIESAASLSCIVFQSNQNDQHGGQSFATFD SSLAPYVKITFDKIKNELSQLGISENIDDKAWEQVKKRTYQAMQIFVFNLNTMHSRAGAQVPFTSVNFGLDTSPWGRLIS EMLLKVYKKGLGRGETPIFPNLIFSLATGVNKEPGDPNYDLRRLAHEVSCERLFPNYSNQDASYNAPFYYREEDPQVVAY MGCRTRVISNRRGPEVTEGRGNLSFTSINLPRIALETSCPSDFYQRLEDTIWLVADQLYDRFKIQKNKKAKEFPFLMGQG LYMDSEDFESEETLEEALKHGTLSIGFIGLAEALKAMIGEHHGESEEAFKKGLQIVEFMDNICKKASEQYNLNFSLLATP AEGLSGRFTELDRETFGEIEGVTDKEWYTNSFHIPVEYSISAYEKIRKESAFNKYTPAGHINYVELDAAPKGNIDAFEQL VNAAMDNDCGYFSVNFPVDQCLNCANNGVIDSETCPVCGSRRIQRVRRVTGYLGVLEEIPDEEGEGKTSGFNDGKYHECL NRVSHLQGFQTKDDQN
Sequences:
>Translated_736_residues MEHKDVALVTEVSKMPTKVVKRDGREQPFDPSKITNAIKKALKAIDKEDHSLALSLTYQVINKLTKHGVDKPTVPQIQEM VENSLMDTGHYEVARAYVIYRNDRDRIREADTKLMKELLKVLETRDQENANVNGDAPMGKMLKGGSEAMKEVYLNHFAKN EHSQAHRNGYIHIHDADFAAIGTTTCLQIPLDRLLAEGFNTGHGWITTPKSIESAASLSCIVFQSNQNDQHGGQSFATFD SSLAPYVKITFDKIKNELSQLGISENIDDKAWEQVKKRTYQAMQIFVFNLNTMHSRAGAQVPFTSVNFGLDTSPWGRLIS EMLLKVYKKGLGRGETPIFPNLIFSLATGVNKEPGDPNYDLRRLAHEVSCERLFPNYSNQDASYNAPFYYREEDPQVVAY MGCRTRVISNRRGPEVTEGRGNLSFTSINLPRIALETSCPSDFYQRLEDTIWLVADQLYDRFKIQKNKKAKEFPFLMGQG LYMDSEDFESEETLEEALKHGTLSIGFIGLAEALKAMIGEHHGESEEAFKKGLQIVEFMDNICKKASEQYNLNFSLLATP AEGLSGRFTELDRETFGEIEGVTDKEWYTNSFHIPVEYSISAYEKIRKESAFNKYTPAGHINYVELDAAPKGNIDAFEQL VNAAMDNDCGYFSVNFPVDQCLNCANNGVIDSETCPVCGSRRIQRVRRVTGYLGVLEEIPDEEGEGKTSGFNDGKYHECL NRVSHLQGFQTKDDQN >Mature_736_residues MEHKDVALVTEVSKMPTKVVKRDGREQPFDPSKITNAIKKALKAIDKEDHSLALSLTYQVINKLTKHGVDKPTVPQIQEM VENSLMDTGHYEVARAYVIYRNDRDRIREADTKLMKELLKVLETRDQENANVNGDAPMGKMLKGGSEAMKEVYLNHFAKN EHSQAHRNGYIHIHDADFAAIGTTTCLQIPLDRLLAEGFNTGHGWITTPKSIESAASLSCIVFQSNQNDQHGGQSFATFD SSLAPYVKITFDKIKNELSQLGISENIDDKAWEQVKKRTYQAMQIFVFNLNTMHSRAGAQVPFTSVNFGLDTSPWGRLIS EMLLKVYKKGLGRGETPIFPNLIFSLATGVNKEPGDPNYDLRRLAHEVSCERLFPNYSNQDASYNAPFYYREEDPQVVAY MGCRTRVISNRRGPEVTEGRGNLSFTSINLPRIALETSCPSDFYQRLEDTIWLVADQLYDRFKIQKNKKAKEFPFLMGQG LYMDSEDFESEETLEEALKHGTLSIGFIGLAEALKAMIGEHHGESEEAFKKGLQIVEFMDNICKKASEQYNLNFSLLATP AEGLSGRFTELDRETFGEIEGVTDKEWYTNSFHIPVEYSISAYEKIRKESAFNKYTPAGHINYVELDAAPKGNIDAFEQL VNAAMDNDCGYFSVNFPVDQCLNCANNGVIDSETCPVCGSRRIQRVRRVTGYLGVLEEIPDEEGEGKTSGFNDGKYHECL NRVSHLQGFQTKDDQN
Specific function: Unknown
COG id: COG1328
COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 glycine radical domain [H]
Homologues:
Organism=Escherichia coli, GI1790686, Length=732, Percent_Identity=32.9234972677596, Blast_Score=357, Evalue=2e-99,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005144 - InterPro: IPR001150 - InterPro: IPR019777 - InterPro: IPR012833 [H]
Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]
EC number: =1.17.4.2 [H]
Molecular weight: Translated: 82995; Mature: 82995
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: PS51161 ATP_CONE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEHKDVALVTEVSKMPTKVVKRDGREQPFDPSKITNAIKKALKAIDKEDHSLALSLTYQV CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEHHHHHHH INKLTKHGVDKPTVPQIQEMVENSLMDTGHYEVARAYVIYRNDRDRIREADTKLMKELLK HHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHH VLETRDQENANVNGDAPMGKMLKGGSEAMKEVYLNHFAKNEHSQAHRNGYIHIHDADFAA HHHCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHCCEEEEECCCCHH IGTTTCLQIPLDRLLAEGFNTGHGWITTPKSIESAASLSCIVFQSNQNDQHGGQSFATFD HCCHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHCCEEEEEEECCCCCCCCCCCHHHHC SSLAPYVKITFDKIKNELSQLGISENIDDKAWEQVKKRTYQAMQIFVFNLNTMHSRAGAQ CCCCCCEEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHEEECHHHHHCCCCC VPFTSVNFGLDTSPWGRLISEMLLKVYKKGLGRGETPIFPNLIFSLATGVNKEPGDPNYD CCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCHH LRRLAHEVSCERLFPNYSNQDASYNAPFYYREEDPQVVAYMGCRTRVISNRRGPEVTEGR HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEECCHHHHHHCCCCCCCCCCCC GNLSFTSINLPRIALETSCPSDFYQRLEDTIWLVADQLYDRFKIQKNKKAKEFPFLMGQG CCEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHCCC LYMDSEDFESEETLEEALKHGTLSIGFIGLAEALKAMIGEHHGESEEAFKKGLQIVEFMD CEECCCCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH NICKKASEQYNLNFSLLATPAEGLSGRFTELDRETFGEIEGVTDKEWYTNSFHIPVEYSI HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCH SAYEKIRKESAFNKYTPAGHINYVELDAAPKGNIDAFEQLVNAAMDNDCGYFSVNFPVDQ HHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHH CLNCANNGVIDSETCPVCGSRRIQRVRRVTGYLGVLEEIPDEEGEGKTSGFNDGKYHECL HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH NRVSHLQGFQTKDDQN HHHHHHCCCCCCCCCC >Mature Secondary Structure MEHKDVALVTEVSKMPTKVVKRDGREQPFDPSKITNAIKKALKAIDKEDHSLALSLTYQV CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEHHHHHHH INKLTKHGVDKPTVPQIQEMVENSLMDTGHYEVARAYVIYRNDRDRIREADTKLMKELLK HHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHH VLETRDQENANVNGDAPMGKMLKGGSEAMKEVYLNHFAKNEHSQAHRNGYIHIHDADFAA HHHCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHCCEEEEECCCCHH IGTTTCLQIPLDRLLAEGFNTGHGWITTPKSIESAASLSCIVFQSNQNDQHGGQSFATFD HCCHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHCCEEEEEEECCCCCCCCCCCHHHHC SSLAPYVKITFDKIKNELSQLGISENIDDKAWEQVKKRTYQAMQIFVFNLNTMHSRAGAQ CCCCCCEEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHEEECHHHHHCCCCC VPFTSVNFGLDTSPWGRLISEMLLKVYKKGLGRGETPIFPNLIFSLATGVNKEPGDPNYD CCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCHH LRRLAHEVSCERLFPNYSNQDASYNAPFYYREEDPQVVAYMGCRTRVISNRRGPEVTEGR HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEECCHHHHHHCCCCCCCCCCCC GNLSFTSINLPRIALETSCPSDFYQRLEDTIWLVADQLYDRFKIQKNKKAKEFPFLMGQG CCEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHCCC LYMDSEDFESEETLEEALKHGTLSIGFIGLAEALKAMIGEHHGESEEAFKKGLQIVEFMD CEECCCCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH NICKKASEQYNLNFSLLATPAEGLSGRFTELDRETFGEIEGVTDKEWYTNSFHIPVEYSI HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCH SAYEKIRKESAFNKYTPAGHINYVELDAAPKGNIDAFEQLVNAAMDNDCGYFSVNFPVDQ HHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHH CLNCANNGVIDSETCPVCGSRRIQRVRRVTGYLGVLEEIPDEEGEGKTSGFNDGKYHECL HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH NRVSHLQGFQTKDDQN HHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]