Click here to switch to the map view.

The map label for this gene is opuBB [H]

Identifier: 188584762

GI number: 188584762

Start: 143328

End: 144173

Strand: Direct

Name: opuBB [H]

Synonym: Nther_0120

Alternate gene names: 188584762

Gene position: 143328-144173 (Clockwise)

Preceding gene: 188584761

Following gene: 188584763

Centisome position: 4.53

GC content: 37.94

Gene sequence:

>846_bases
ATGACAGTCAATAAAAACACAAAATCTGAACTTAACCACCGTCAAGTCGAAATCCAAGATAAAGGTGAAAGTAGGACTCG
ATCTCGACAGATTAAAGTAATATTAACAAAGTACTCTCATATACTTATTCCGATCTTGTATATAACTTTGGGAACTGTTT
ATACGGTTATTAATGTTCAAAATCCTGTTGATAGTTTAGCAGAAGGGTGGTTGTCATATGAAAGAATTGGTGGATTACTT
TATGAACATATAATTCTAGTTGGACTTGCTACTTTAGGAGCTATCTTAACAAGTGTTCCTTTAGGTATTTTAATTACCCG
GCCCACCTTTAGATGGCTCACTCCTTTTGTAGATAACCCTGTCAATGTGGGTCAAACTGTTCCTAGCATAGCTATCTTAG
GTTTAGCATATTACTTTATGGGGACAGGATTACTTACAGCTTTATTTGCATTATGGTTATATTCGCTTCTGCCTATACTT
CGGAACACTTCTATTGGAATTAAAAGTGTAGATCCGGAAATCTTGGAAGCCGCTAGGGGAATGGGTATGACACCTTATAG
GATTTTTATAAAAATAGAATTTCCCTTAGCGCTACCTGTTATTATGGCAGGGATAAGGACTTCAGTAGTCATTTGTACGG
GAGCAGCTACCCTGGCCACCTTTATTGGAGCCGGGGCTCTTGGAGAAATCATTAATGCTGGGTTATCCATGAGGCGTATT
CAACTTGTTTATCAAGGGGCAGTATTAGCAGCACTATTTGCTTTGTTGCTTGATAATTTGATAGGGACCTTAGAAAGATA
TTTAACTCAAGAAGCTTATGATGAGGACGAGGTCGACGAAAATTAG

Upstream 100 bases:

>100_bases
ATGCTTAATCAGAGTGTCTATCACGTTCCGGTAATGGATGGGCAAAATGAATGCCTGGGGGTTATTACTGTTGACGATGT
TTTTAAGGCGGTGAGTTCTA

Downstream 100 bases:

>100_bases
TTACAATTTGTTTCAACTTCTTTCAAACATTAAAAATGGATAAGGGGGAAAAGGATGAAAATGAAGAATCTAGCGATAAC
TTTAGTTATCCTAAGTATGA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MTVNKNTKSELNHRQVEIQDKGESRTRSRQIKVILTKYSHILIPILYITLGTVYTVINVQNPVDSLAEGWLSYERIGGLL
YEHIILVGLATLGAILTSVPLGILITRPTFRWLTPFVDNPVNVGQTVPSIAILGLAYYFMGTGLLTALFALWLYSLLPIL
RNTSIGIKSVDPEILEAARGMGMTPYRIFIKIEFPLALPVIMAGIRTSVVICTGAATLATFIGAGALGEIINAGLSMRRI
QLVYQGAVLAALFALLLDNLIGTLERYLTQEAYDEDEVDEN

Sequences:

>Translated_281_residues
MTVNKNTKSELNHRQVEIQDKGESRTRSRQIKVILTKYSHILIPILYITLGTVYTVINVQNPVDSLAEGWLSYERIGGLL
YEHIILVGLATLGAILTSVPLGILITRPTFRWLTPFVDNPVNVGQTVPSIAILGLAYYFMGTGLLTALFALWLYSLLPIL
RNTSIGIKSVDPEILEAARGMGMTPYRIFIKIEFPLALPVIMAGIRTSVVICTGAATLATFIGAGALGEIINAGLSMRRI
QLVYQGAVLAALFALLLDNLIGTLERYLTQEAYDEDEVDEN
>Mature_280_residues
TVNKNTKSELNHRQVEIQDKGESRTRSRQIKVILTKYSHILIPILYITLGTVYTVINVQNPVDSLAEGWLSYERIGGLLY
EHIILVGLATLGAILTSVPLGILITRPTFRWLTPFVDNPVNVGQTVPSIAILGLAYYFMGTGLLTALFALWLYSLLPILR
NTSIGIKSVDPEILEAARGMGMTPYRIFIKIEFPLALPVIMAGIRTSVVICTGAATLATFIGAGALGEIINAGLSMRRIQ
LVYQGAVLAALFALLLDNLIGTLERYLTQEAYDEDEVDEN

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=199, Percent_Identity=42.2110552763819, Blast_Score=137, Evalue=7e-34,
Organism=Escherichia coli, GI1788451, Length=211, Percent_Identity=36.0189573459716, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1789033, Length=175, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30865; Mature: 30734

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVNKNTKSELNHRQVEIQDKGESRTRSRQIKVILTKYSHILIPILYITLGTVYTVINVQ
CCCCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NPVDSLAEGWLSYERIGGLLYEHIILVGLATLGAILTSVPLGILITRPTFRWLTPFVDNP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCC
VNVGQTVPSIAILGLAYYFMGTGLLTALFALWLYSLLPILRNTSIGIKSVDPEILEAARG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHC
MGMTPYRIFIKIEFPLALPVIMAGIRTSVVICTGAATLATFIGAGALGEIINAGLSMRRI
CCCCCEEEEEEEECCHHHHHHHHHHHHHEEEEECHHHHHHHHCCHHHHHHHHCCCHHHHH
QLVYQGAVLAALFALLLDNLIGTLERYLTQEAYDEDEVDEN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TVNKNTKSELNHRQVEIQDKGESRTRSRQIKVILTKYSHILIPILYITLGTVYTVINVQ
CCCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NPVDSLAEGWLSYERIGGLLYEHIILVGLATLGAILTSVPLGILITRPTFRWLTPFVDNP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCC
VNVGQTVPSIAILGLAYYFMGTGLLTALFALWLYSLLPILRNTSIGIKSVDPEILEAARG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHC
MGMTPYRIFIKIEFPLALPVIMAGIRTSVVICTGAATLATFIGAGALGEIINAGLSMRRI
CCCCCEEEEEEEECCHHHHHHHHHHHHHEEEEECHHHHHHHHCCHHHHHHHHCCCHHHHH
QLVYQGAVLAALFALLLDNLIGTLERYLTQEAYDEDEVDEN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377 [H]