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The map label for this gene is 188584735

Identifier: 188584735

GI number: 188584735

Start: 109303

End: 110685

Strand: Direct

Name: 188584735

Synonym: Nther_0093

Alternate gene names: NA

Gene position: 109303-110685 (Clockwise)

Preceding gene: 188584734

Following gene: 188584736

Centisome position: 3.45

GC content: 35.0

Gene sequence:

>1383_bases
TTGAAGCCTTATTATCATTCAGTAAGACTAAAAGAAGAGTCTTGCATTGGATGTGTACACTGTCTCAAGTTCTGCCCTAC
CCAAGCCATAAGAATAAAAGGAGGACGGGCAGAGATCCTAAAGGAAAGATGTATCGACTGTGGGGGCTGTATTCAAATTT
GCCCTAACAATGCCAAAATTGCAGAATCAGATAATATTTCCCAAATTGATAATTTTCAACATAAAGTCGCTGTAGTTCCT
CCTTCAGTCTTAGTGCAGTTTCCCAAAGATGTATTACCAAAAGAGGTTTTTCGAGCTTTTCTAGATTTAGGCTTTGATAA
AGTGTTTTCAATTTCTCTTGGTGGAGAATGGTATTCATATGAAGTAAATAAAATTTTAAACTCAAATTTTTCAAAAAAAC
CATTAATTTCTACTCATTGTCCAGCTATTGTAAGATTAATCCAAGTAAAATTTCCTGAACTTGTAGGCAATTTAGTTCCT
GTAGATACACCTCTGGATATTACAGGAGATATAGCTAGAGAATATCTAAAAAACCAACTTAATTTAGATGATGAAGATAT
CGGTATTTTTTTAATTTCAATGTGCTCTGCAAGAGTAACAGCTGTCAAAAGCCCAGAGGGCCGACCTTTTTCTTCACTTA
ATGGCGTACTGTCTTTAATTGATATTTATAGCCAACTATTAAAAAGTGTAAAAGCTACCAATAGTGAAGAAGAACAAATT
TCAAATAACCGTAAAAACTTGGATGGAGCCATTTATCCACCAGAGCTAGGTATTGGTGTTGGGCACGATGTAACGGGATG
TGACCAAACAGGAATAGAATCTAATGATTGTCTTTCAATTAGTGGGATTAATAATGTGATGGATGTTTTAGAAGAAATCG
AGCTAGGAAAAATATCAGAACTAGATTATATAGAATTGCATTCCTGTTATGGAGGCTGTGTTGGAGGGGTTTTAAATGTA
GAAAATCCCTTTGTCTCCAAGGTGAGAATGAACAAGATAATTAACGAAATGGAAAAAGATAGCTCATATCTAGATGGAGT
AACACAGAGTTTACCAAAAAGCTTTAATATCAGAAAAATTAATATTCAGCCAAGACCATTAGAAGGGCTTTCAAATAGCA
TCAGCCAATCGGTTAAAAAACTATCTGAAATTGAAAAACTATTGAACTGTCTACCACAACTAGATTGTGGAGCTTGCGGT
TCACCTTCTTGCAGATCTTTAGCGGAAGATGTGGTGCTTCAAAGAGCAGATATGAAGGACTGTGTTTTTTACTTGCTTGA
TAATGTTGCAAGCTTAACTCAAGAAGCTTATACCATGGCAAAAGGAATTCCACATGTTCTTAAAATGAGGCATAAGGGAC
TTTATAACTTTAGAAAAGATTAA

Upstream 100 bases:

>100_bases
TTAATTCACAAGTTGGAGAAGGAACTGTCCTTGAAGCTACAGTATATATTAACTAGAAGCTGATTCAGTAGATTAGGTTA
ATATAAAGGAGCGGGTAATT

Downstream 100 bases:

>100_bases
TATATACATGGGAATAAACTGGACTTAATAATGTTCATTTTAACCTAGATAGGTGGGTGGTCTGTTGATGACTCTCCGGG
ATTTAATTGCCGAGCTTGAT

Product: Fe-S cluster domain protein

Products: NA

Alternate protein names: CpI; Fe-only hydrogenase; [Fe] hydrogenase [H]

Number of amino acids: Translated: 460; Mature: 460

Protein sequence:

>460_residues
MKPYYHSVRLKEESCIGCVHCLKFCPTQAIRIKGGRAEILKERCIDCGGCIQICPNNAKIAESDNISQIDNFQHKVAVVP
PSVLVQFPKDVLPKEVFRAFLDLGFDKVFSISLGGEWYSYEVNKILNSNFSKKPLISTHCPAIVRLIQVKFPELVGNLVP
VDTPLDITGDIAREYLKNQLNLDDEDIGIFLISMCSARVTAVKSPEGRPFSSLNGVLSLIDIYSQLLKSVKATNSEEEQI
SNNRKNLDGAIYPPELGIGVGHDVTGCDQTGIESNDCLSISGINNVMDVLEEIELGKISELDYIELHSCYGGCVGGVLNV
ENPFVSKVRMNKIINEMEKDSSYLDGVTQSLPKSFNIRKINIQPRPLEGLSNSISQSVKKLSEIEKLLNCLPQLDCGACG
SPSCRSLAEDVVLQRADMKDCVFYLLDNVASLTQEAYTMAKGIPHVLKMRHKGLYNFRKD

Sequences:

>Translated_460_residues
MKPYYHSVRLKEESCIGCVHCLKFCPTQAIRIKGGRAEILKERCIDCGGCIQICPNNAKIAESDNISQIDNFQHKVAVVP
PSVLVQFPKDVLPKEVFRAFLDLGFDKVFSISLGGEWYSYEVNKILNSNFSKKPLISTHCPAIVRLIQVKFPELVGNLVP
VDTPLDITGDIAREYLKNQLNLDDEDIGIFLISMCSARVTAVKSPEGRPFSSLNGVLSLIDIYSQLLKSVKATNSEEEQI
SNNRKNLDGAIYPPELGIGVGHDVTGCDQTGIESNDCLSISGINNVMDVLEEIELGKISELDYIELHSCYGGCVGGVLNV
ENPFVSKVRMNKIINEMEKDSSYLDGVTQSLPKSFNIRKINIQPRPLEGLSNSISQSVKKLSEIEKLLNCLPQLDCGACG
SPSCRSLAEDVVLQRADMKDCVFYLLDNVASLTQEAYTMAKGIPHVLKMRHKGLYNFRKD
>Mature_460_residues
MKPYYHSVRLKEESCIGCVHCLKFCPTQAIRIKGGRAEILKERCIDCGGCIQICPNNAKIAESDNISQIDNFQHKVAVVP
PSVLVQFPKDVLPKEVFRAFLDLGFDKVFSISLGGEWYSYEVNKILNSNFSKKPLISTHCPAIVRLIQVKFPELVGNLVP
VDTPLDITGDIAREYLKNQLNLDDEDIGIFLISMCSARVTAVKSPEGRPFSSLNGVLSLIDIYSQLLKSVKATNSEEEQI
SNNRKNLDGAIYPPELGIGVGHDVTGCDQTGIESNDCLSISGINNVMDVLEEIELGKISELDYIELHSCYGGCVGGVLNV
ENPFVSKVRMNKIINEMEKDSSYLDGVTQSLPKSFNIRKINIQPRPLEGLSNSISQSVKKLSEIEKLLNCLPQLDCGACG
SPSCRSLAEDVVLQRADMKDCVFYLLDNVASLTQEAYTMAKGIPHVLKMRHKGLYNFRKD

Specific function: Unknown

COG id: COG4624

COG function: function code R; Iron only hydrogenase large subunit, C-terminal domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR012675
- InterPro:   IPR009016
- InterPro:   IPR004108
- InterPro:   IPR003149
- InterPro:   IPR013352
- InterPro:   IPR001041 [H]

Pfam domain/function: PF02906 Fe_hyd_lg_C; PF02256 Fe_hyd_SSU [H]

EC number: =1.12.7.2 [H]

Molecular weight: Translated: 50928; Mature: 50928

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPYYHSVRLKEESCIGCVHCLKFCPTQAIRIKGGRAEILKERCIDCGGCIQICPNNAKI
CCCCCCCEEECHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCEEEECCCCCCC
AESDNISQIDNFQHKVAVVPPSVLVQFPKDVLPKEVFRAFLDLGFDKVFSISLGGEWYSY
CCCCCHHHHHCCCCEEEECCHHHHHHCCHHCCHHHHHHHHHHCCCHHEEEEEECCCEEEH
EVNKILNSNFSKKPLISTHCPAIVRLIQVKFPELVGNLVPVDTPLDITGDIAREYLKNQL
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC
NLDDEDIGIFLISMCSARVTAVKSPEGRPFSSLNGVLSLIDIYSQLLKSVKATNSEEEQI
CCCCHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
SNNRKNLDGAIYPPELGIGVGHDVTGCDQTGIESNDCLSISGINNVMDVLEEIELGKISE
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCC
LDYIELHSCYGGCVGGVLNVENPFVSKVRMNKIINEMEKDSSYLDGVTQSLPKSFNIRKI
CCHHHHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
NIQPRPLEGLSNSISQSVKKLSEIEKLLNCLPQLDCGACGSPSCRSLAEDVVLQRADMKD
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHH
CVFYLLDNVASLTQEAYTMAKGIPHVLKMRHKGLYNFRKD
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKPYYHSVRLKEESCIGCVHCLKFCPTQAIRIKGGRAEILKERCIDCGGCIQICPNNAKI
CCCCCCCEEECHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCEEEECCCCCCC
AESDNISQIDNFQHKVAVVPPSVLVQFPKDVLPKEVFRAFLDLGFDKVFSISLGGEWYSY
CCCCCHHHHHCCCCEEEECCHHHHHHCCHHCCHHHHHHHHHHCCCHHEEEEEECCCEEEH
EVNKILNSNFSKKPLISTHCPAIVRLIQVKFPELVGNLVPVDTPLDITGDIAREYLKNQL
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC
NLDDEDIGIFLISMCSARVTAVKSPEGRPFSSLNGVLSLIDIYSQLLKSVKATNSEEEQI
CCCCHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
SNNRKNLDGAIYPPELGIGVGHDVTGCDQTGIESNDCLSISGINNVMDVLEEIELGKISE
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCC
LDYIELHSCYGGCVGGVLNVENPFVSKVRMNKIINEMEKDSSYLDGVTQSLPKSFNIRKI
CCHHHHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
NIQPRPLEGLSNSISQSVKKLSEIEKLLNCLPQLDCGACGSPSCRSLAEDVVLQRADMKD
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHH
CVFYLLDNVASLTQEAYTMAKGIPHVLKMRHKGLYNFRKD
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1911757; 9836629; 10529166 [H]