Click here to switch to the map view.

The map label for this gene is rlpA [C]

Identifier: 188584687

GI number: 188584687

Start: 59836

End: 60687

Strand: Direct

Name: rlpA [C]

Synonym: Nther_0045

Alternate gene names: 188584687

Gene position: 59836-60687 (Clockwise)

Preceding gene: 188584686

Following gene: 188584688

Centisome position: 1.89

GC content: 37.44

Gene sequence:

>852_bases
ATGAAAACTATGAGAATAAGTCTCTTGTTTGGATTGTTTCTCTTATTTTTGCAAATGGATAGTGGAGCTCTAGTTATGGA
ACAGGAATACCAAGTAGAAGTAGTAATTGATGGTGAAAAAACGGATGAACTGACGGTTAAAGGTAAACCCGAACAGGAAA
ACCTGATTGAAAAAATTGATTTAGAGCTCGATGATCAAGATGAAGTAAAGCTTACTGAGCTAAAAGCAGATAACAGTGAC
CAAGATATTTATTGGAGATTAGAAATTAATGAATGGAGAACCGAGACCGAAGAACAAGTCGAGATTCTACCTTATGGAGA
AGAGACTAGAGAAAACGATCAACTTTTAAAAGGTAAAACCAGAAAAATTCAAGAAGGACAAAGAGGTTCTCGTATAAAAG
AGATACGTTCGGAGTATTTGGGAGATGAACTTATCAATGAAGAGAAGAATTACGATGTGATAGAGTTACCGCAAACAGAA
ATTATCGAAAAAGGGACTTATGAACCTCCGGGTTATTCATATATTGAAGATAAAGAAGTAATAGAAGTTAAGGGAACCGA
AACAGGAGAAGCATCTTGGTACGGGGCAAGATTTCACGGGAACAGAACATTCAGTGGCGAAATCTATGATATGTATGATT
TGACAGCTGCTCATCCAAGTTTACCTATGAATTCACTAGTTCACGTTGAATTTCCCGTTACTGGAGAAAGTGTGATTGTG
CGCATCAATGACAGAGGACCACATGTTGGTGGACGTATTATCGATTTATCGAAGCAAGCTGCTGAAAAAATTGGTTTAGC
GCCCCATGGTGTTGGCGATGTCAAAGTAAAAGTTCTAGAAAACGACAATTAA

Upstream 100 bases:

>100_bases
CAGAAGAAGTCGCTGACATAAAAGGAGAAAGCTTCGAAGATGTAGTAACAACTACAACAAAAAATGCCAAAGATTTATTC
CGGATTTAGGGGGGACTAAA

Downstream 100 bases:

>100_bases
TATAAGTGAGCGGTTATGCTAAAACCAGGAGTGTGAGTTGAATTGAATTTATTTTCCCCTAAGGAAGTTTCACAACTACT
TAAACGTTATGAGATTCACC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MKTMRISLLFGLFLLFLQMDSGALVMEQEYQVEVVIDGEKTDELTVKGKPEQENLIEKIDLELDDQDEVKLTELKADNSD
QDIYWRLEINEWRTETEEQVEILPYGEETRENDQLLKGKTRKIQEGQRGSRIKEIRSEYLGDELINEEKNYDVIELPQTE
IIEKGTYEPPGYSYIEDKEVIEVKGTETGEASWYGARFHGNRTFSGEIYDMYDLTAAHPSLPMNSLVHVEFPVTGESVIV
RINDRGPHVGGRIIDLSKQAAEKIGLAPHGVGDVKVKVLENDN

Sequences:

>Translated_283_residues
MKTMRISLLFGLFLLFLQMDSGALVMEQEYQVEVVIDGEKTDELTVKGKPEQENLIEKIDLELDDQDEVKLTELKADNSD
QDIYWRLEINEWRTETEEQVEILPYGEETRENDQLLKGKTRKIQEGQRGSRIKEIRSEYLGDELINEEKNYDVIELPQTE
IIEKGTYEPPGYSYIEDKEVIEVKGTETGEASWYGARFHGNRTFSGEIYDMYDLTAAHPSLPMNSLVHVEFPVTGESVIV
RINDRGPHVGGRIIDLSKQAAEKIGLAPHGVGDVKVKVLENDN
>Mature_283_residues
MKTMRISLLFGLFLLFLQMDSGALVMEQEYQVEVVIDGEKTDELTVKGKPEQENLIEKIDLELDDQDEVKLTELKADNSD
QDIYWRLEINEWRTETEEQVEILPYGEETRENDQLLKGKTRKIQEGQRGSRIKEIRSEYLGDELINEEKNYDVIELPQTE
IIEKGTYEPPGYSYIEDKEVIEVKGTETGEASWYGARFHGNRTFSGEIYDMYDLTAAHPSLPMNSLVHVEFPVTGESVIV
RINDRGPHVGGRIIDLSKQAAEKIGLAPHGVGDVKVKVLENDN

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=93, Percent_Identity=38.7096774193548, Blast_Score=71, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 32352; Mature: 32352

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: PS51109 G5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTMRISLLFGLFLLFLQMDSGALVMEQEYQVEVVIDGEKTDELTVKGKPEQENLIEKID
CCEEEHHHHHHHHHHHHCCCCCCEEEECCEEEEEEECCCCCCEEEEECCCCHHHHHHHHC
LELDDQDEVKLTELKADNSDQDIYWRLEINEWRTETEEQVEILPYGEETRENDQLLKGKT
CCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCHHHCCCC
RKIQEGQRGSRIKEIRSEYLGDELINEEKNYDVIELPQTEIIEKGTYEPPGYSYIEDKEV
HHHHCCCCCCHHHHHHHHHCCHHHHCCCCCCCEEECCHHHHHHCCCCCCCCCCCCCCCEE
IEVKGTETGEASWYGARFHGNRTFSGEIYDMYDLTAAHPSLPMNSLVHVEFPVTGESVIV
EEEECCCCCCCCEEEEEEECCEEECCCEEEEEEECCCCCCCCCCCEEEEEECCCCCEEEE
RINDRGPHVGGRIIDLSKQAAEKIGLAPHGVGDVKVKVLENDN
EECCCCCCCCCEEEECCHHHHHHCCCCCCCCCCEEEEEEECCC
>Mature Secondary Structure
MKTMRISLLFGLFLLFLQMDSGALVMEQEYQVEVVIDGEKTDELTVKGKPEQENLIEKID
CCEEEHHHHHHHHHHHHCCCCCCEEEECCEEEEEEECCCCCCEEEEECCCCHHHHHHHHC
LELDDQDEVKLTELKADNSDQDIYWRLEINEWRTETEEQVEILPYGEETRENDQLLKGKT
CCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCHHHCCCC
RKIQEGQRGSRIKEIRSEYLGDELINEEKNYDVIELPQTEIIEKGTYEPPGYSYIEDKEV
HHHHCCCCCCHHHHHHHHHCCHHHHCCCCCCCEEECCHHHHHHCCCCCCCCCCCCCCCEE
IEVKGTETGEASWYGARFHGNRTFSGEIYDMYDLTAAHPSLPMNSLVHVEFPVTGESVIV
EEEECCCCCCCCEEEEEEECCEEECCCEEEEEEECCCCCCCCCCCEEEEEECCCCCEEEE
RINDRGPHVGGRIIDLSKQAAEKIGLAPHGVGDVKVKVLENDN
EECCCCCCCCCEEEECCHHHHHHCCCCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]