| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527547
Identifier: 188527547
GI number: 188527547
Start: 751477
End: 752046
Strand: Reverse
Name: 188527547
Synonym: HPSH_03845
Alternate gene names: NA
Gene position: 752046-751477 (Counterclockwise)
Preceding gene: 188527548
Following gene: 188527546
Centisome position: 46.75
GC content: 38.6
Gene sequence:
>570_bases ATGGCCAAAAAGGATTGGAATTTTTTTAAACCTTTAGAGCCTACTAAAAAATATTTTGGCTCTTTTAAAATCGGCTATCT TTACCAGCATGCAGAAACGACTAAAAGATCCCCCATCCGCCCTAAAAACCGCCCTCCTATTTTGATGGATAAAAATTACC ATGACGCTTCTTTGGGCTTTGAATCGGGTTATACTTTGAAAAAGAAAATTTTATTAGGGGGGTATTTGGATGCAGGAATG GGCGATTCGTATTTCATGAGCGCTGGGTTTATGGCTGGGGTGAGGCTTTTTAAGGGGTGGGTTATCCCTAAAATCGCTTT AGGCTATCAGCTTCAAATTTTAGGGGCTAAGATTGATAAGTATCAATTCAATATCCAATCAGCGGTGGGGAGTGTGGGCT TGTTTTTCAATGCGGCTAAAAATTTTGGCTTGAGCATAGAAGCAAGGGGTGGTATCCCTTTTTATTTTATCCAAAGCAAA TTTTCTAAAGCCTTTGGCACGCCACGATTGAATATCTATTCTATTGGTATCACTTTCACCTTTTATGATTTTACTAGATT TTTAGGGTAA
Upstream 100 bases:
>100_bases GATTCCATGGAAAGATTGTAGAATTTTCCAAACAAAAATTGGAATTAAAGCTTTGATTTTTAGATTTTTCTTAATCTTAA GCCTTTTAAAAGGGGTTTTA
Downstream 100 bases:
>100_bases AATATTCATTTTAAAAATCTATAGAGTATAAAAACCATAATTAGACAAACCTTTAAGGATTTATGATGATTTTCATTGAT GCATGTTTTAGAAAGGAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 189; Mature: 188
Protein sequence:
>189_residues MAKKDWNFFKPLEPTKKYFGSFKIGYLYQHAETTKRSPIRPKNRPPILMDKNYHDASLGFESGYTLKKKILLGGYLDAGM GDSYFMSAGFMAGVRLFKGWVIPKIALGYQLQILGAKIDKYQFNIQSAVGSVGLFFNAAKNFGLSIEARGGIPFYFIQSK FSKAFGTPRLNIYSIGITFTFYDFTRFLG
Sequences:
>Translated_189_residues MAKKDWNFFKPLEPTKKYFGSFKIGYLYQHAETTKRSPIRPKNRPPILMDKNYHDASLGFESGYTLKKKILLGGYLDAGM GDSYFMSAGFMAGVRLFKGWVIPKIALGYQLQILGAKIDKYQFNIQSAVGSVGLFFNAAKNFGLSIEARGGIPFYFIQSK FSKAFGTPRLNIYSIGITFTFYDFTRFLG >Mature_188_residues AKKDWNFFKPLEPTKKYFGSFKIGYLYQHAETTKRSPIRPKNRPPILMDKNYHDASLGFESGYTLKKKILLGGYLDAGMG DSYFMSAGFMAGVRLFKGWVIPKIALGYQLQILGAKIDKYQFNIQSAVGSVGLFFNAAKNFGLSIEARGGIPFYFIQSKF SKAFGTPRLNIYSIGITFTFYDFTRFLG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21395; Mature: 21264
Theoretical pI: Translated: 10.44; Mature: 10.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKKDWNFFKPLEPTKKYFGSFKIGYLYQHAETTKRSPIRPKNRPPILMDKNYHDASLGF CCCCCCCCCCCCCHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCC ESGYTLKKKILLGGYLDAGMGDSYFMSAGFMAGVRLFKGWVIPKIALGYQLQILGAKIDK CCCCEEEEEEEEECEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCEEEEEECCEECE YQFNIQSAVGSVGLFFNAAKNFGLSIEARGGIPFYFIQSKFSKAFGTPRLNIYSIGITFT EEEEHHHHHCHHHHEEEHHCCCCEEEEECCCCCEEEEEHHHHHHCCCCCEEEEEEEEEEE FYDFTRFLG EEHHHHHCC >Mature Secondary Structure AKKDWNFFKPLEPTKKYFGSFKIGYLYQHAETTKRSPIRPKNRPPILMDKNYHDASLGF CCCCCCCCCCCCHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCC ESGYTLKKKILLGGYLDAGMGDSYFMSAGFMAGVRLFKGWVIPKIALGYQLQILGAKIDK CCCCEEEEEEEEECEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCEEEEEECCEECE YQFNIQSAVGSVGLFFNAAKNFGLSIEARGGIPFYFIQSKFSKAFGTPRLNIYSIGITFT EEEEHHHHHCHHHHEEEHHCCCCEEEEECCCCCEEEEEHHHHHHCCCCCEEEEEEEEEEE FYDFTRFLG EEHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA