| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is ispG
Identifier: 188527525
GI number: 188527525
Start: 717845
End: 718924
Strand: Reverse
Name: ispG
Synonym: HPSH_03735
Alternate gene names: 188527525
Gene position: 718924-717845 (Counterclockwise)
Preceding gene: 188527530
Following gene: 188527524
Centisome position: 44.69
GC content: 42.5
Gene sequence:
>1080_bases ATGCTAGAAAACAGAGTGAAGACCAAGCAAATTTTTATCGGTGGCGTGGCCATAGGAGGTGATGCTCCTATAAGCACGCA AAGCATGACCTTTAGTAAAACCGCTGATATTGAAAGCACTAAAAATCAAATTGACAGACTCAAACTCGCCGGGGCTGATT TAGTGAGGGTGGCGGTGAGTAATGAAAAGGACGCCCTAGCCTTAAAAGAATTGAAAAGAGTGTCCCCTTTGCCTTTAATC GCTGATATTCATTTCCATTATAAATTCGCTCTCATTGCCGCTCAAAGCGTGGATGCGATCAGGATTAACCCCGGAAACAT CGGCTCTAAAGACAAAATCAAAGCAGTAGTTGATGCTTGCAAAGAAAAAAACATCCCTATAAGAATTGGCGTGAATGCTG GGAGTTTAGAAAAGCAGTTTGATCAAAAATACGGGCCCACCCCAAAAGGCATGGTAGAAAGCGCTTTGTATAACGCCAAA CTTTTAGAAGATTTGGATTTTACTGATTTTAAGATTTCTTTAAAAGCGAGCGATGTGATACGCACCATAGAAGCTTATAG GATGCTACGCCCTCTTGTGATCTATCCTTTCCATTTGGGGGTTACTGAAGCGGGTAATCTTTTTAGCTCCAGTATCAAAT CCGCCATGGCTTTAGGGGGGCTTTTAATGGAGGGCATTGGGGATACGATGCGCGTATCCATCACAGGGGAATTAGAAAAT GAAATCAAAGTGGCTAGAGCGATTTTACGCCATAGCGGGCGTTTGAAAGAAGGGATTAATTTGATTTCTTGCCCCACTTG CGGGCGCATTGAAGCCAATTTAGTGGATATGGCGAGCAAGGTAGAAAAACGCCTAAGCCACATTAAAACCCCTTTAGACA TTAGCGTGATGGGTTGCGTGGTGAATGCTTTAGGTGAAGCCAAGCATGCAGACATGGCGATCGCTTTTGGGAATCGCAGC GGTTTGATCATTAAAGAGGGTAAAGTCATTCACAAACTGGCTGAAAAGGATTTGTTTGAAACTTTTGTGATAGAAGTGGA AAATTTAGCTAAAGAAAGAGAAAAAAGTTTAAAGGATTAG
Upstream 100 bases:
>100_bases AATGGAATAGTTAATCTTACCTAAAATTTAAGCGTTATGGTGTGAAACCACTAAGAAAGAGTATAATAGCGAGTGAGAAT TTAACTGATGAAGAGGTTTA
Downstream 100 bases:
>100_bases GCATGATCAATAAGTTTAAAAATTTTGTGAGCAACTACCAGCAATCTAACCACTATAGAGAGCCTTTAGGCTTTGGCATT GCCAGAGTGGATATTGCCCC
Product: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Products: NA
Alternate protein names: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase [H]
Number of amino acids: Translated: 359; Mature: 359
Protein sequence:
>359_residues MLENRVKTKQIFIGGVAIGGDAPISTQSMTFSKTADIESTKNQIDRLKLAGADLVRVAVSNEKDALALKELKRVSPLPLI ADIHFHYKFALIAAQSVDAIRINPGNIGSKDKIKAVVDACKEKNIPIRIGVNAGSLEKQFDQKYGPTPKGMVESALYNAK LLEDLDFTDFKISLKASDVIRTIEAYRMLRPLVIYPFHLGVTEAGNLFSSSIKSAMALGGLLMEGIGDTMRVSITGELEN EIKVARAILRHSGRLKEGINLISCPTCGRIEANLVDMASKVEKRLSHIKTPLDISVMGCVVNALGEAKHADMAIAFGNRS GLIIKEGKVIHKLAEKDLFETFVIEVENLAKEREKSLKD
Sequences:
>Translated_359_residues MLENRVKTKQIFIGGVAIGGDAPISTQSMTFSKTADIESTKNQIDRLKLAGADLVRVAVSNEKDALALKELKRVSPLPLI ADIHFHYKFALIAAQSVDAIRINPGNIGSKDKIKAVVDACKEKNIPIRIGVNAGSLEKQFDQKYGPTPKGMVESALYNAK LLEDLDFTDFKISLKASDVIRTIEAYRMLRPLVIYPFHLGVTEAGNLFSSSIKSAMALGGLLMEGIGDTMRVSITGELEN EIKVARAILRHSGRLKEGINLISCPTCGRIEANLVDMASKVEKRLSHIKTPLDISVMGCVVNALGEAKHADMAIAFGNRS GLIIKEGKVIHKLAEKDLFETFVIEVENLAKEREKSLKD >Mature_359_residues MLENRVKTKQIFIGGVAIGGDAPISTQSMTFSKTADIESTKNQIDRLKLAGADLVRVAVSNEKDALALKELKRVSPLPLI ADIHFHYKFALIAAQSVDAIRINPGNIGSKDKIKAVVDACKEKNIPIRIGVNAGSLEKQFDQKYGPTPKGMVESALYNAK LLEDLDFTDFKISLKASDVIRTIEAYRMLRPLVIYPFHLGVTEAGNLFSSSIKSAMALGGLLMEGIGDTMRVSITGELEN EIKVARAILRHSGRLKEGINLISCPTCGRIEANLVDMASKVEKRLSHIKTPLDISVMGCVVNALGEAKHADMAIAFGNRS GLIIKEGKVIHKLAEKDLFETFVIEVENLAKEREKSLKD
Specific function: Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate [H]
COG id: COG0821
COG function: function code I; Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ispG family [H]
Homologues:
Organism=Escherichia coli, GI1788863, Length=341, Percent_Identity=46.9208211143695, Blast_Score=315, Evalue=2e-87,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR016425 - InterPro: IPR004588 [H]
Pfam domain/function: PF04551 GcpE [H]
EC number: =1.17.7.1 [H]
Molecular weight: Translated: 39195; Mature: 39195
Theoretical pI: Translated: 9.30; Mature: 9.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLENRVKTKQIFIGGVAIGGDAPISTQSMTFSKTADIESTKNQIDRLKLAGADLVRVAVS CCCCCCCEEEEEEEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC NEKDALALKELKRVSPLPLIADIHFHYKFALIAAQSVDAIRINPGNIGSKDKIKAVVDAC CCCHHHHHHHHHHCCCCCEEEEEEEEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHH KEKNIPIRIGVNAGSLEKQFDQKYGPTPKGMVESALYNAKLLEDLDFTDFKISLKASDVI HCCCCCEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHH RTIEAYRMLRPLVIYPFHLGVTEAGNLFSSSIKSAMALGGLLMEGIGDTMRVSITGELEN HHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHH EIKVARAILRHSGRLKEGINLISCPTCGRIEANLVDMASKVEKRLSHIKTPLDISVMGCV HHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH VNALGEAKHADMAIAFGNRSGLIIKEGKVIHKLAEKDLFETFVIEVENLAKEREKSLKD HHHHCCCCCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MLENRVKTKQIFIGGVAIGGDAPISTQSMTFSKTADIESTKNQIDRLKLAGADLVRVAVS CCCCCCCEEEEEEEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC NEKDALALKELKRVSPLPLIADIHFHYKFALIAAQSVDAIRINPGNIGSKDKIKAVVDAC CCCHHHHHHHHHHCCCCCEEEEEEEEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHH KEKNIPIRIGVNAGSLEKQFDQKYGPTPKGMVESALYNAKLLEDLDFTDFKISLKASDVI HCCCCCEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHH RTIEAYRMLRPLVIYPFHLGVTEAGNLFSSSIKSAMALGGLLMEGIGDTMRVSITGELEN HHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHH EIKVARAILRHSGRLKEGINLISCPTCGRIEANLVDMASKVEKRLSHIKTPLDISVMGCV HHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH VNALGEAKHADMAIAFGNRSGLIIKEGKVIHKLAEKDLFETFVIEVENLAKEREKSLKD HHHHCCCCCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA