Click here to switch to the map view.

The map label for this gene is 188527467

Identifier: 188527467

GI number: 188527467

Start: 653455

End: 654267

Strand: Reverse

Name: 188527467

Synonym: HPSH_03425

Alternate gene names: NA

Gene position: 654267-653455 (Counterclockwise)

Preceding gene: 188527470

Following gene: 188527466

Centisome position: 40.67

GC content: 37.64

Gene sequence:

>813_bases
ATGTTGTGCGTGTTTGATATAGAAACCATTCCTAGCGTGAGCTTGTGTAAAGAGCATTTTCAATTAGAAGAAAATGATGC
GCTAAAAATCTGTGAACGGAGTTTTGAAAAGCAAAAAGAAAAAAGCGGGAGCGAGTTTTTGCCTCTTTATTTGCATGAAA
TTATCTCTATTGCAGCGGTCATAGGCGATGATTACGGGAAGTTTATCAAAGTGGGAAATTTTGGTCAAAAACACGAAAAT
AAAGAGGATTTTGCGAGCGAAAAAGAGCTTTTAGAGGACTTTTTCAAATACTTTAACGAAAAGCAACCGCGCTTGATAAG
CTTCAATGGCAGAGGTTTTGACATGCCCCTACTCACGCTCAAAGCCCTTAAATATAATTTAACTTTAGACGCTTTTTACA
ACCAAGAAAACAAATGGGAAAATTACCGCGCGCGCTATAGCGAGCAGTTTCATTTGGATTTAATGGATAGCTTGAGCCAT
TATGGATCCGTTAGGGGGTTGAATCTAAATGGCGTTTGCTCTATGATGAATATTCCTGGTAAATTTGATGTGAGCGGGGA
TTTAGTGCATGCGATTTATTACAACCCACATTTAAGCCAAAAGGAGAAAAAAGGCGTTATTGACAGCTATTGCCAAAGCG
ATGCGCTTAACACTTACTGGCTTTTTTTGAAATACGAAGTGTTAAAAGGCGCTTTAAATAAAGAGCAATACCTTGGGCTA
TTGAGCGATTTTTTAGAAAAATTCCCTAAGGAAAAATCCTATTCAAGCGTTTTTATTAACGCTTTAGAGAAAGAAATTAG
GGAGTTTGCTTGA

Upstream 100 bases:

>100_bases
ACATAGTTTTGATATTAAAAGTTAGCACTATAGCGCTATAAGACTAATTGTTATATAATAAAAGCGAAACAAGAATGTTA
AAATGCGAAAGGAGCGTGTA

Downstream 100 bases:

>100_bases
ACTTCTATGATTATATAAACAATCTATCTAATATTTTTAATAAAAGAGTCTTTTATGTCTACAATATCAAAAAATAAACC
ATATAGTTTTATTAAAAACC

Product: hypothetical protein

Products: NA

Alternate protein names: 3-5' Exonuclease PolB-Like Protein; Polysaccharide Biosynthesis Protein; Propable PolB; Polysaccharide Biosynthesis Protein WlaX; Lipoprotein SmpA/OmlA Family; 3&Apos; Large-Conductance Mechanosensitive Channel

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MLCVFDIETIPSVSLCKEHFQLEENDALKICERSFEKQKEKSGSEFLPLYLHEIISIAAVIGDDYGKFIKVGNFGQKHEN
KEDFASEKELLEDFFKYFNEKQPRLISFNGRGFDMPLLTLKALKYNLTLDAFYNQENKWENYRARYSEQFHLDLMDSLSH
YGSVRGLNLNGVCSMMNIPGKFDVSGDLVHAIYYNPHLSQKEKKGVIDSYCQSDALNTYWLFLKYEVLKGALNKEQYLGL
LSDFLEKFPKEKSYSSVFINALEKEIREFA

Sequences:

>Translated_270_residues
MLCVFDIETIPSVSLCKEHFQLEENDALKICERSFEKQKEKSGSEFLPLYLHEIISIAAVIGDDYGKFIKVGNFGQKHEN
KEDFASEKELLEDFFKYFNEKQPRLISFNGRGFDMPLLTLKALKYNLTLDAFYNQENKWENYRARYSEQFHLDLMDSLSH
YGSVRGLNLNGVCSMMNIPGKFDVSGDLVHAIYYNPHLSQKEKKGVIDSYCQSDALNTYWLFLKYEVLKGALNKEQYLGL
LSDFLEKFPKEKSYSSVFINALEKEIREFA
>Mature_270_residues
MLCVFDIETIPSVSLCKEHFQLEENDALKICERSFEKQKEKSGSEFLPLYLHEIISIAAVIGDDYGKFIKVGNFGQKHEN
KEDFASEKELLEDFFKYFNEKQPRLISFNGRGFDMPLLTLKALKYNLTLDAFYNQENKWENYRARYSEQFHLDLMDSLSH
YGSVRGLNLNGVCSMMNIPGKFDVSGDLVHAIYYNPHLSQKEKKGVIDSYCQSDALNTYWLFLKYEVLKGALNKEQYLGL
LSDFLEKFPKEKSYSSVFINALEKEIREFA

Specific function: Unknown

COG id: COG3298

COG function: function code L; Predicted 3'-5' exonuclease related to the exonuclease domain of PolB

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31432; Mature: 31432

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCVFDIETIPSVSLCKEHFQLEENDALKICERSFEKQKEKSGSEFLPLYLHEIISIAAV
CEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
IGDDYGKFIKVGNFGQKHENKEDFASEKELLEDFFKYFNEKQPRLISFNGRGFDMPLLTL
HCCCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH
KALKYNLTLDAFYNQENKWENYRARYSEQFHLDLMDSLSHYGSVRGLNLNGVCSMMNIPG
HHHHHEEEEEEHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCC
KFDVSGDLVHAIYYNPHLSQKEKKGVIDSYCQSDALNTYWLFLKYEVLKGALNKEQYLGL
CCCCCCCEEEEEEECCCCCCHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHH
LSDFLEKFPKEKSYSSVFINALEKEIREFA
HHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLCVFDIETIPSVSLCKEHFQLEENDALKICERSFEKQKEKSGSEFLPLYLHEIISIAAV
CEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
IGDDYGKFIKVGNFGQKHENKEDFASEKELLEDFFKYFNEKQPRLISFNGRGFDMPLLTL
HCCCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH
KALKYNLTLDAFYNQENKWENYRARYSEQFHLDLMDSLSHYGSVRGLNLNGVCSMMNIPG
HHHHHEEEEEEHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCC
KFDVSGDLVHAIYYNPHLSQKEKKGVIDSYCQSDALNTYWLFLKYEVLKGALNKEQYLGL
CCCCCCCEEEEEEECCCCCCHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHH
LSDFLEKFPKEKSYSSVFINALEKEIREFA
HHHHHHHCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA