| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527281
Identifier: 188527281
GI number: 188527281
Start: 472261
End: 473136
Strand: Direct
Name: 188527281
Synonym: HPSH_02440
Alternate gene names: NA
Gene position: 472261-473136 (Clockwise)
Preceding gene: 188527280
Following gene: 188527282
Centisome position: 29.36
GC content: 40.18
Gene sequence:
>876_bases ATGAAACGAAGGGATTTTATTAAAACGACTGCTTTAGGCGCTACAAGTGCTGTTTTAGGAGCGCAGATTTTGCAGGCAGA AGAAAGCAAAGGGAGTGTTGCAAAATATAAAATAGAAGCTCAATACAGCATTGATTTTGATTCTGCAGAGCACACTTCAC TTTTCATTCCCATGCCGAGTGTTGTAGCGAGCAATGTGCATTTACAAGGCAATCATGCTAACTATAAAAGCATGCTCAAC TTTGGAGTGCCTTATTTGCAAGTGGATTTTTTAAAAAGCGCTCAAAAAAAGCAAGTCCATTTGTCTTATGAGATCGCTAG CTATCAATTGAATGAGCGTTTGTTTGAAACGAGCGATTTTGTAGCAATGGGGCGTTATGAAAGAGACGATGCGAGCGTGG CTAACATTGCCAACCAGCTCAAGGGAACAACCCCTAAAGAAAGCGTTCGTAATTTTTATGCGTTCATCAAGCATGAGATG CCTAAAAGACAGAAGGCTTTAGAGGGTAAAGAAAATTTGCCTAAGCGAGAGAGTTTGCCTTGGTTTGCAACCATTTCAAA AGAGAGCATGTTTGTGTCCTTATGCCATGCGTGTGGGATTAAAAGCGCTGAAGTGCAAGGCTTGAAATTGGCTCAAAACA GCGTGGTGAAAAACGCTTCTAAGGTAGAAGTGTATTTGAAAGATTCATTTCTAGCGTTTGATTTTCAAAATAATCACAAG GAAGTTTTTATCCCGTTGAATCGTCATAAAGACATGCAGTTAGATTCTGCTTTATTGGCGACTTTTGGCGATGCCTTTGC CCTTGTAGATGGTAGGGACTTAGGCAATTACGAGAGCAAACTTTTTGAAAAAAGAGTGTCCTATACGATTGTCTAA
Upstream 100 bases:
>100_bases TTTAGGTTTTTGGATACTTATCAATCCTTTAGGGTTGGTGGTGTGTCCTACTTTTTCATTCATTCAACGAATTTAAAAAT TACAATAAAGAGTTATACCT
Downstream 100 bases:
>100_bases AGGCATGAAATTTAGGAATATTCCTTGATAGTGAGCTTTCCTTTTTAAGGAGAGCAAAAAGGGTTTAAAGGGTTGTCTTT ATGCGAGAATTTTTTAAGAA
Product: hypothetical protein
Products: NA
Alternate protein names: KatA Associated Protein
Number of amino acids: Translated: 291; Mature: 291
Protein sequence:
>291_residues MKRRDFIKTTALGATSAVLGAQILQAEESKGSVAKYKIEAQYSIDFDSAEHTSLFIPMPSVVASNVHLQGNHANYKSMLN FGVPYLQVDFLKSAQKKQVHLSYEIASYQLNERLFETSDFVAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKHEM PKRQKALEGKENLPKRESLPWFATISKESMFVSLCHACGIKSAEVQGLKLAQNSVVKNASKVEVYLKDSFLAFDFQNNHK EVFIPLNRHKDMQLDSALLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV
Sequences:
>Translated_291_residues MKRRDFIKTTALGATSAVLGAQILQAEESKGSVAKYKIEAQYSIDFDSAEHTSLFIPMPSVVASNVHLQGNHANYKSMLN FGVPYLQVDFLKSAQKKQVHLSYEIASYQLNERLFETSDFVAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKHEM PKRQKALEGKENLPKRESLPWFATISKESMFVSLCHACGIKSAEVQGLKLAQNSVVKNASKVEVYLKDSFLAFDFQNNHK EVFIPLNRHKDMQLDSALLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV >Mature_291_residues MKRRDFIKTTALGATSAVLGAQILQAEESKGSVAKYKIEAQYSIDFDSAEHTSLFIPMPSVVASNVHLQGNHANYKSMLN FGVPYLQVDFLKSAQKKQVHLSYEIASYQLNERLFETSDFVAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKHEM PKRQKALEGKENLPKRESLPWFATISKESMFVSLCHACGIKSAEVQGLKLAQNSVVKNASKVEVYLKDSFLAFDFQNNHK EVFIPLNRHKDMQLDSALLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32770; Mature: 32770
Theoretical pI: Translated: 9.13; Mature: 9.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRRDFIKTTALGATSAVLGAQILQAEESKGSVAKYKIEAQYSIDFDSAEHTSLFIPMPS CCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCCEEEEECHH VVASNVHLQGNHANYKSMLNFGVPYLQVDFLKSAQKKQVHLSYEIASYQLNERLFETSDF HHHCCEEEECCCCCHHHHHHCCCCCEEHHHHHCCCCCEEEEEEEEEHHHHHHHHHHCCCE VAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKHEMPKRQKALEGKENLPKRESLP EEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHCCHHCCCCCCCCC WFATISKESMFVSLCHACGIKSAEVQGLKLAQNSVVKNASKVEVYLKDSFLAFDFQNNHK EEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCEEEEEEECCCC EVFIPLNRHKDMQLDSALLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV EEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCEECC >Mature Secondary Structure MKRRDFIKTTALGATSAVLGAQILQAEESKGSVAKYKIEAQYSIDFDSAEHTSLFIPMPS CCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCCEEEEECHH VVASNVHLQGNHANYKSMLNFGVPYLQVDFLKSAQKKQVHLSYEIASYQLNERLFETSDF HHHCCEEEECCCCCHHHHHHCCCCCEEHHHHHCCCCCEEEEEEEEEHHHHHHHHHHCCCE VAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKHEMPKRQKALEGKENLPKRESLP EEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHCCHHCCCCCCCCC WFATISKESMFVSLCHACGIKSAEVQGLKLAQNSVVKNASKVEVYLKDSFLAFDFQNNHK EEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCEEEEEEECCCC EVFIPLNRHKDMQLDSALLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV EEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA