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The map label for this gene is smf [H]

Identifier: 188527139

GI number: 188527139

Start: 330517

End: 331317

Strand: Direct

Name: smf [H]

Synonym: HPSH_01730

Alternate gene names: 188527139

Gene position: 330517-331317 (Clockwise)

Preceding gene: 188527138

Following gene: 188527140

Centisome position: 20.55

GC content: 41.82

Gene sequence:

>801_bases
ATGAAAAGCAACTTCCAATACAGCACGCTAGAGAATATCCCTAAAGCCTTTGATATTCTCAAAGACCCCCCTAAAAAGCT
CTATTGTGTGGGCGATATAAAGCTTTTAGACGCGACTTTAAAAGTGGCTATCATCGGCACAAGAAGACCCACCCCTTATA
GCAAGCAACACACCATCACTCTAGCCAGAGAGTTTGCTAAAAATGGTGCGGTTATTGTGAGTGGAGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAAAAACGATCATGCTTTCGCCTTGCAGTTTGGATTTTATCTATCCCACGAA
CAACCACCAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTTATGCCCGTTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTAGTGATCGCTTTAAGCGATGCGGTAATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCCCAAAAGTATCAAAAACCCTTATTTGTTTTGCCCCAGCGCCTGAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTCAATATTCAAAATTTTATAAACACCCTTTTAAAAGACC
ACCATTTAAAAGAAATGCCTGAAATGAAAGACGAATTTTTAGAATATTGCGCCAAAAACCCGAGCTATGAAGAAGCGTAT
CTCAAATTTGGGGACAAGCTTTTAGAATACGAGCTGTTGGGTAAGATCAAACGCATCAATCATATCGTGGTGTTAGCGTG
A

Upstream 100 bases:

>100_bases
ACACTAAATCTTCAGACATCCATTTCAAAACCATTGATGGCAATCAAAGCGTGGAAACGATTGAAGTGGAGATTATATTG
CCTAAATAGTTAATCAACGA

Downstream 100 bases:

>100_bases
TTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGTGCTTTTAAACGGCGTTATTTTACCTTTAGAAGCGATT
TTACGCCACAACAGGAATCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MKSNFQYSTLENIPKAFDILKDPPKKLYCVGDIKLLDATLKVAIIGTRRPTPYSKQHTITLAREFAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHQVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMPEMKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHIVVLA

Sequences:

>Translated_266_residues
MKSNFQYSTLENIPKAFDILKDPPKKLYCVGDIKLLDATLKVAIIGTRRPTPYSKQHTITLAREFAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHQVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMPEMKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHIVVLA
>Mature_266_residues
MKSNFQYSTLENIPKAFDILKDPPKKLYCVGDIKLLDATLKVAIIGTRRPTPYSKQHTITLAREFAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHQVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMPEMKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHIVVLA

Specific function: Unknown

COG id: COG0758

COG function: function code LU; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smf family [H]

Homologues:

Organism=Escherichia coli, GI48994932, Length=180, Percent_Identity=28.8888888888889, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003488
- InterPro:   IPR010994 [H]

Pfam domain/function: PF02481 DNA_processg_A [H]

EC number: NA

Molecular weight: Translated: 29869; Mature: 29869

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSNFQYSTLENIPKAFDILKDPPKKLYCVGDIKLLDATLKVAIIGTRRPTPYSKQHTIT
CCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEEEEEEEEECCCCCCCCCCHHHH
LAREFAKNGAVIVSGGALGVDIIAQENALPKTIMLSPCSLDFIYPTNNHQVIQEIAQNGL
HHHHHHHCCCEEEECCCEEEEEEECCCCCCCEEEECCCCEEEEEECCCHHHHHHHHHCCE
ILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSGSMSSARLAQKYQKPLFVLPQ
EEECCCCCCCCCCCCEEECCEEEEEEECEEEECCCCCCCCCCHHHHHHHHHCCCCEEEHH
RLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMPEMKDEFLEYCAKNPSYEEAY
HCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHH
LKFGDKLLEYELLGKIKRINHIVVLA
HHHHHHHHHHHHHHHHHHCCEEEEEC
>Mature Secondary Structure
MKSNFQYSTLENIPKAFDILKDPPKKLYCVGDIKLLDATLKVAIIGTRRPTPYSKQHTIT
CCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEEEEEEEEECCCCCCCCCCHHHH
LAREFAKNGAVIVSGGALGVDIIAQENALPKTIMLSPCSLDFIYPTNNHQVIQEIAQNGL
HHHHHHHCCCEEEECCCEEEEEEECCCCCCCEEEECCCCEEEEEECCCHHHHHHHHHCCE
ILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSGSMSSARLAQKYQKPLFVLPQ
EEECCCCCCCCCCCCEEECCEEEEEEECEEEECCCCCCCCCCHHHHHHHHHCCCCEEEHH
RLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMPEMKDEFLEYCAKNPSYEEAY
HCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHH
LKFGDKLLEYELLGKIKRINHIVVLA
HHHHHHHHHHHHHHHHHHCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]