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The map label for this gene is copD [H]

Identifier: 187928859

GI number: 187928859

Start: 1873517

End: 1874446

Strand: Reverse

Name: copD [H]

Synonym: Rpic_1776

Alternate gene names: 187928859

Gene position: 1874446-1873517 (Counterclockwise)

Preceding gene: 187928860

Following gene: 187928858

Centisome position: 47.54

GC content: 61.94

Gene sequence:

>930_bases
ATGGCGGACGATTGGCTCAATATCGCCCTGCGCTTTGGGCTGTACCTGGACTTGACGATCCTTTTCGGGGTCTCGCTGTT
CGGGGTCCAGGCGTTGCGACCCGATCACCGGGCCACGGCGATTGCGCGCCGATACGTCCGTGCCGTCGGAGTCACTGCCG
CATTGGGCATCGTGCTGTCGCTCTGGAGCTTCATTGTGATGGCGAAGGCGATGACGGGGGCCACCGAGTACGCTGAACTC
ACCAGCCATGTCTTCAGCATGATGCTGACCACCACCGCGGTTGGCCTGGCCTGGATGGCGCGATTGGTGGCCCTGGCCGG
ATGCTTGGTCGCCGTTGCGCGTTTGCGGAAGCACCCAGCGCCTCACTTCGGCGTGTGCGCCGGGCTGGGTGCGGTGGCTC
TGCTAACGGTCACTTGGGCCGGGCATGGGGCGATGGACGACGGTGTGAAGGGATACCTTCATCTCGCATTCGATATCGCC
CACGTTTTGGCCGCTGGCGCCTGGGTTGGAGCATTGACGGCGTTTGTGCTGCTAGCGTCAACAAGGCAAGCGGCCTCATC
GGAAGCCGTGGAAATCCTTAGTCATACATCCAATGGCTTCGCGCGTCTTGGGACGCTGATCGTTGCCACGCTGCTTTCGA
CTGGGACGTTCAACTATCTTTTGATTGTCGGGCCGACGATTAACGGGCTGTTCTCCACGCTTTACGGGCGCTTATTGTTG
ATCAAGCTGGCCTTGTTCGCGCTGATGCTCGGCTTGGCTGCGGCCAATCGTTATCGGCTGAGCCCGCGGCTTGAGGCGGC
GGTTCGGGCCGCAGACCACGCCCATGCGGTGATGGCGTTGCGTCGCAGCCTGGTCATGGAGACCAGTCTCGCCGTACTGA
TTTTGGCGTTGGTCGCTTGGCTTGGCGTGCTTTCGCCGCCTGGAACCTGA

Upstream 100 bases:

>100_bases
CAACCGCTGACGACCGGGACGTACAAGGTGGAGTGGCGCGCGGTCTCGTCGGATACCCACCCGATGACGGGGAATTTCAC
GTTCAAGGTGAAGTAAGGCC

Downstream 100 bases:

>100_bases
TACTGATGACCTGTTTGCCGGAGGAACCACGATGATGGAATCGCAGATCGCCAAGCCAGTGTCCGCGATAAGACGGTTCA
TGGTTGCGGGTCTGGTACTA

Product: copper resistance D domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MADDWLNIALRFGLYLDLTILFGVSLFGVQALRPDHRATAIARRYVRAVGVTAALGIVLSLWSFIVMAKAMTGATEYAEL
TSHVFSMMLTTTAVGLAWMARLVALAGCLVAVARLRKHPAPHFGVCAGLGAVALLTVTWAGHGAMDDGVKGYLHLAFDIA
HVLAAGAWVGALTAFVLLASTRQAASSEAVEILSHTSNGFARLGTLIVATLLSTGTFNYLLIVGPTINGLFSTLYGRLLL
IKLALFALMLGLAAANRYRLSPRLEAAVRAADHAHAVMALRRSLVMETSLAVLILALVAWLGVLSPPGT

Sequences:

>Translated_309_residues
MADDWLNIALRFGLYLDLTILFGVSLFGVQALRPDHRATAIARRYVRAVGVTAALGIVLSLWSFIVMAKAMTGATEYAEL
TSHVFSMMLTTTAVGLAWMARLVALAGCLVAVARLRKHPAPHFGVCAGLGAVALLTVTWAGHGAMDDGVKGYLHLAFDIA
HVLAAGAWVGALTAFVLLASTRQAASSEAVEILSHTSNGFARLGTLIVATLLSTGTFNYLLIVGPTINGLFSTLYGRLLL
IKLALFALMLGLAAANRYRLSPRLEAAVRAADHAHAVMALRRSLVMETSLAVLILALVAWLGVLSPPGT
>Mature_308_residues
ADDWLNIALRFGLYLDLTILFGVSLFGVQALRPDHRATAIARRYVRAVGVTAALGIVLSLWSFIVMAKAMTGATEYAELT
SHVFSMMLTTTAVGLAWMARLVALAGCLVAVARLRKHPAPHFGVCAGLGAVALLTVTWAGHGAMDDGVKGYLHLAFDIAH
VLAAGAWVGALTAFVLLASTRQAASSEAVEILSHTSNGFARLGTLIVATLLSTGTFNYLLIVGPTINGLFSTLYGRLLLI
KLALFALMLGLAAANRYRLSPRLEAAVRAADHAHAVMALRRSLVMETSLAVLILALVAWLGVLSPPGT

Specific function: Exact function not known. Involved in copper resistance. Appears to be involved in copper uptake in conjunction with CopC [H]

COG id: COG1276

COG function: function code P; Putative copper export protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CopD family [H]

Homologues:

Organism=Escherichia coli, GI1788145, Length=303, Percent_Identity=26.0726072607261, Blast_Score=71, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008457 [H]

Pfam domain/function: PF05425 CopD [H]

EC number: NA

Molecular weight: Translated: 32643; Mature: 32512

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADDWLNIALRFGLYLDLTILFGVSLFGVQALRPDHRATAIARRYVRAVGVTAALGIVLS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LWSFIVMAKAMTGATEYAELTSHVFSMMLTTTAVGLAWMARLVALAGCLVAVARLRKHPA
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PHFGVCAGLGAVALLTVTWAGHGAMDDGVKGYLHLAFDIAHVLAAGAWVGALTAFVLLAS
CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRQAASSEAVEILSHTSNGFARLGTLIVATLLSTGTFNYLLIVGPTINGLFSTLYGRLLL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHH
IKLALFALMLGLAAANRYRLSPRLEAAVRAADHAHAVMALRRSLVMETSLAVLILALVAW
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGVLSPPGT
HHCCCCCCC
>Mature Secondary Structure 
ADDWLNIALRFGLYLDLTILFGVSLFGVQALRPDHRATAIARRYVRAVGVTAALGIVLS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LWSFIVMAKAMTGATEYAELTSHVFSMMLTTTAVGLAWMARLVALAGCLVAVARLRKHPA
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PHFGVCAGLGAVALLTVTWAGHGAMDDGVKGYLHLAFDIAHVLAAGAWVGALTAFVLLAS
CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRQAASSEAVEILSHTSNGFARLGTLIVATLLSTGTFNYLLIVGPTINGLFSTLYGRLLL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHH
IKLALFALMLGLAAANRYRLSPRLEAAVRAADHAHAVMALRRSLVMETSLAVLILALVAW
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGVLSPPGT
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3372485; 8449873 [H]