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The map label for this gene is xerC [H]

Identifier: 187928823

GI number: 187928823

Start: 1833933

End: 1835612

Strand: Reverse

Name: xerC [H]

Synonym: Rpic_1740

Alternate gene names: 187928823

Gene position: 1835612-1833933 (Counterclockwise)

Preceding gene: 187928824

Following gene: 187928820

Centisome position: 46.56

GC content: 70.3

Gene sequence:

>1680_bases
ATGGATACGGCCCCGACCGATGCCTCCACGGCACTCCCCGATGCCGCGTCCCTGGCCGCGCTGCGTGCCTGGCATGCCGG
CCTGAGCTCCCGGCAAGCCGTGGCGCAATACCTGGGGGAGGAGAGGGCGCGCGGCCAATCCTCGCGCGCCGTGCTGGGCC
GCATTCGCCGCCGGCTTGCCTTGCTGGCACGCGAGCGCGGCCGCGACGATCTGGCCGCGTTGTTCGAGATGCCGGCGTCG
GCGCGGGTGGCGCAGGGCAGGGTGGCCGACCGTGCTATCGAGGTCCTGCGCACGCTGCCGACGCCACAGCCAGCGATCAC
CGACGACATCGGCCGCTGGCTACCGGCCCGCGCCGTCGCCGCCCTGCGCGCCCACGGCATCGAGACGCTGGCGGCGCTGA
CGGTGCGCGTGCCCAGGCGCCGACGCTGGTGGGCAGCCATCCCGAGGCTGGGCGCGACCGGTGCCAGACAGATCGAGGCG
TTCTTCGCCGCGCATCCCGAGCTGACCGAGCGGGCCCGCGCGCTGATCGTGCAGGAGCGGCGCAGCAGCGTCGTGCCGTG
GGAGCAGCTACGCTTGCCCCATCAGGTCGACGGCTCCGAAGGGCGCTTTCGCGCCCCGCGCGCGACGTGCACCTTGACCG
CGGACAACGACTACGAGGCGGTGCAGGCCTGGCTGGCGCTGCACGAGTCACCGGCTACTCACCGCACCTACCGCAAGGAA
GCGGAACGGCTGATCCTGTGGGCCATCGTCGAGCGTCAGCGGCCGCTGTCGTCGTTGACCACCGAAGACGCCGTGGCCTA
CCGCGCCTTCCTGCGGCGTCCCATGCCACGAGAGCGGTGGGTCGGGCCGCCACGCCCGCGCTCGTCGCCGGACTGGCGGC
CGTTCACCGGTGCGCTGGCCGCACGCTCGGTCGCCCATGCGCTGTCCATCCTTGGGGCGATGTTCCGGTGGCTGGTCGAG
CAACGCTACGTGCTGGCCAATCCCTTCGCCGGCATCAAGGTGCGCGGCGGCGGCCGCACCGCGGCGCTGGACAATTCGCG
CGCCTTTACCGACGGTGAATGGAAGTTGGTGCGGACCATTGCCGACGGGCTCGAGTGGTCCTACGGTTGGGAGGCCGCCG
CGGCGCAGCGCCTGCGCTTCGTGCTGGATTTTGCCTATGCAACGGGGCTACGTCCCAGCGAGCTGGTAGGAGCCACGCTC
GGGGATATCTGGACCGACGCGCAAGGCGACGAATGGCTCGAGCTGACCGGCAAGGGCGGCCGCAGCGGCAACGTGGCAAT
GCCCCCGTTGGCGCGGCGGGCGGTGGAGCGCTACCTGACGGAACGCGGACTGCCCATCAGTCGGCGTTTGTGGCGTCCCG
AGGTCCGCCTGGTCGGTGATCTGGGCAGCGAGCCCGAGATCGGCATCTCCAGCACGCGGCTATGGCATGTGGTGAAGCGG
TTCTTCAAGCTGGCTGCGGATGTCATTGGTGCAGACCATCCCGCGGCGGCGGACAAGCTGCGCCGCGCCAGTCCCCACTG
GATGCGCCATACGCACGCCACACACGCGCTAGGAAGCGGCGCGGAACTGACCATCGTTCGAGACAACCTGCGGCATGCGT
CCGTGTCGACGACGTCGATCTACCTGCACAGCGACGAGGTAAAAAGGGCAAGGCAGATCGGAGAGGCATTTGGGGCGTAA

Upstream 100 bases:

>100_bases
ATAAGTATCCTTATCGTAATAGCCAGTTCGCTGCGCTAAACTGGCCCCCATGAAATCACGCCTGACCCTACCTAACTCCA
CATCATCCGCCAGCACGGGT

Downstream 100 bases:

>100_bases
ATGACACCCGCAAGGGCGCCAATAGCGGGCTGTACGGACGAATAAGGGACTACAATCTTGCCCCTTCGTTGCCGAGCGGT
TCGGGCTCAAAACACGGAAT

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 559; Mature: 559

Protein sequence:

>559_residues
MDTAPTDASTALPDAASLAALRAWHAGLSSRQAVAQYLGEERARGQSSRAVLGRIRRRLALLARERGRDDLAALFEMPAS
ARVAQGRVADRAIEVLRTLPTPQPAITDDIGRWLPARAVAALRAHGIETLAALTVRVPRRRRWWAAIPRLGATGARQIEA
FFAAHPELTERARALIVQERRSSVVPWEQLRLPHQVDGSEGRFRAPRATCTLTADNDYEAVQAWLALHESPATHRTYRKE
AERLILWAIVERQRPLSSLTTEDAVAYRAFLRRPMPRERWVGPPRPRSSPDWRPFTGALAARSVAHALSILGAMFRWLVE
QRYVLANPFAGIKVRGGGRTAALDNSRAFTDGEWKLVRTIADGLEWSYGWEAAAAQRLRFVLDFAYATGLRPSELVGATL
GDIWTDAQGDEWLELTGKGGRSGNVAMPPLARRAVERYLTERGLPISRRLWRPEVRLVGDLGSEPEIGISSTRLWHVVKR
FFKLAADVIGADHPAAADKLRRASPHWMRHTHATHALGSGAELTIVRDNLRHASVSTTSIYLHSDEVKRARQIGEAFGA

Sequences:

>Translated_559_residues
MDTAPTDASTALPDAASLAALRAWHAGLSSRQAVAQYLGEERARGQSSRAVLGRIRRRLALLARERGRDDLAALFEMPAS
ARVAQGRVADRAIEVLRTLPTPQPAITDDIGRWLPARAVAALRAHGIETLAALTVRVPRRRRWWAAIPRLGATGARQIEA
FFAAHPELTERARALIVQERRSSVVPWEQLRLPHQVDGSEGRFRAPRATCTLTADNDYEAVQAWLALHESPATHRTYRKE
AERLILWAIVERQRPLSSLTTEDAVAYRAFLRRPMPRERWVGPPRPRSSPDWRPFTGALAARSVAHALSILGAMFRWLVE
QRYVLANPFAGIKVRGGGRTAALDNSRAFTDGEWKLVRTIADGLEWSYGWEAAAAQRLRFVLDFAYATGLRPSELVGATL
GDIWTDAQGDEWLELTGKGGRSGNVAMPPLARRAVERYLTERGLPISRRLWRPEVRLVGDLGSEPEIGISSTRLWHVVKR
FFKLAADVIGADHPAAADKLRRASPHWMRHTHATHALGSGAELTIVRDNLRHASVSTTSIYLHSDEVKRARQIGEAFGA
>Mature_559_residues
MDTAPTDASTALPDAASLAALRAWHAGLSSRQAVAQYLGEERARGQSSRAVLGRIRRRLALLARERGRDDLAALFEMPAS
ARVAQGRVADRAIEVLRTLPTPQPAITDDIGRWLPARAVAALRAHGIETLAALTVRVPRRRRWWAAIPRLGATGARQIEA
FFAAHPELTERARALIVQERRSSVVPWEQLRLPHQVDGSEGRFRAPRATCTLTADNDYEAVQAWLALHESPATHRTYRKE
AERLILWAIVERQRPLSSLTTEDAVAYRAFLRRPMPRERWVGPPRPRSSPDWRPFTGALAARSVAHALSILGAMFRWLVE
QRYVLANPFAGIKVRGGGRTAALDNSRAFTDGEWKLVRTIADGLEWSYGWEAAAAQRLRFVLDFAYATGLRPSELVGATL
GDIWTDAQGDEWLELTGKGGRSGNVAMPPLARRAVERYLTERGLPISRRLWRPEVRLVGDLGSEPEIGISSTRLWHVVKR
FFKLAADVIGADHPAAADKLRRASPHWMRHTHATHALGSGAELTIVRDNLRHASVSTTSIYLHSDEVKRARQIGEAFGA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=179, Percent_Identity=37.4301675977654, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790244, Length=323, Percent_Identity=28.4829721362229, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 62097; Mature: 62097

Theoretical pI: Translated: 11.43; Mature: 11.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTAPTDASTALPDAASLAALRAWHAGLSSRQAVAQYLGEERARGQSSRAVLGRIRRRLA
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LLARERGRDDLAALFEMPASARVAQGRVADRAIEVLRTLPTPQPAITDDIGRWLPARAVA
HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
ALRAHGIETLAALTVRVPRRRRWWAAIPRLGATGARQIEAFFAAHPELTERARALIVQER
HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
RSSVVPWEQLRLPHQVDGSEGRFRAPRATCTLTADNDYEAVQAWLALHESPATHRTYRKE
HCCCCCHHHHCCCCCCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHH
AERLILWAIVERQRPLSSLTTEDAVAYRAFLRRPMPRERWVGPPRPRSSPDWRPFTGALA
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHHHH
ARSVAHALSILGAMFRWLVEQRYVLANPFAGIKVRGGGRTAALDNSRAFTDGEWKLVRTI
HHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEECCCCEEEECCCCCCCCCCHHHHHHH
ADGLEWSYGWEAAAAQRLRFVLDFAYATGLRPSELVGATLGDIWTDAQGDEWLELTGKGG
HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC
RSGNVAMPPLARRAVERYLTERGLPISRRLWRPEVRLVGDLGSEPEIGISSTRLWHVVKR
CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCHHEEECCCCCCCCCCCHHHHHHHHHH
FFKLAADVIGADHPAAADKLRRASPHWMRHTHATHALGSGAELTIVRDNLRHASVSTTSI
HHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEE
YLHSDEVKRARQIGEAFGA
EEECHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDTAPTDASTALPDAASLAALRAWHAGLSSRQAVAQYLGEERARGQSSRAVLGRIRRRLA
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LLARERGRDDLAALFEMPASARVAQGRVADRAIEVLRTLPTPQPAITDDIGRWLPARAVA
HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
ALRAHGIETLAALTVRVPRRRRWWAAIPRLGATGARQIEAFFAAHPELTERARALIVQER
HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
RSSVVPWEQLRLPHQVDGSEGRFRAPRATCTLTADNDYEAVQAWLALHESPATHRTYRKE
HCCCCCHHHHCCCCCCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHH
AERLILWAIVERQRPLSSLTTEDAVAYRAFLRRPMPRERWVGPPRPRSSPDWRPFTGALA
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHHHH
ARSVAHALSILGAMFRWLVEQRYVLANPFAGIKVRGGGRTAALDNSRAFTDGEWKLVRTI
HHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEECCCCEEEECCCCCCCCCCHHHHHHH
ADGLEWSYGWEAAAAQRLRFVLDFAYATGLRPSELVGATLGDIWTDAQGDEWLELTGKGG
HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC
RSGNVAMPPLARRAVERYLTERGLPISRRLWRPEVRLVGDLGSEPEIGISSTRLWHVVKR
CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCHHEEECCCCCCCCCCCHHHHHHHHHH
FFKLAADVIGADHPAAADKLRRASPHWMRHTHATHALGSGAELTIVRDNLRHASVSTTSI
HHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEE
YLHSDEVKRARQIGEAFGA
EEECHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA