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The map label for this gene is yedQ [H]

Identifier: 187927638

GI number: 187927638

Start: 574809

End: 576566

Strand: Reverse

Name: yedQ [H]

Synonym: Rpic_0538

Alternate gene names: 187927638

Gene position: 576566-574809 (Counterclockwise)

Preceding gene: 187927639

Following gene: 187927637

Centisome position: 14.62

GC content: 67.63

Gene sequence:

>1758_bases
ATGGACAGGCGCTTTGGCGCCAGCGTCGCCATCGTCCTCGTTCCGGTGTTGTCGTTATCGTGCTGGCTGCTGGGCTACGC
ATGGTTGGCCTACGGCCGTGCCGACGATTCCGCCCGCAGCGTCCAGGTGCTGCGCATGACGTTGCTGGCCATGGAGAAGG
TTTCAGCCGAACGCGGCCCGACCAACGGCGTGCTCGGCGAAGACTTGCCGGTGCCGGCCGAGCGCAGCGCGGCCCTGCAA
CGCATGCGCGCCGTCAGCGACGAACACGTCGCCCAATTGCTCGACGCGCTGGGCCCTGAACATTGCCCAGGCTGCGAGGC
CGACATCAAGGCCGCGCGCCGCGCCCAGACGCATCTGGCCGCCGCGCGCGCCAACATCGACCGGCTGACCGCCCTGCCCC
TGCGCTCACGCAGCAGCGACGACCTGGCCGATGGCGTGAACCGCATGATCGCGGTCATCCCGGAATTCCTGCCCATCGTC
AACGCGCGCACGGCCAACATCACGCGCGGCGATCCCGACGTGCTCAATTGCCTGACGCTGGCGCGGCTGTCGGCCGATCT
ACGTGAATACGCGGGCCAGCTCGGTTCGCGCTTTACCGGTGCGCTGGCCATGCACCGCATGCTCACGTTTGACGAGCAGC
TTGCAATCGAACGCACGCAAGGCCGTATTGACCAGCTGCGCAGCATGATCGAGACCCGCGTGGGTGCGCATTCGGCACTG
AACCAGCACGCCTTGGCCACGCTCGGCGCCCAGTACTTCGGCGACGGGCTGCGCTATGTGGCTGCCGTGCGCGCCAAGGC
CAGCCAGCCCGGCGGCGTCGATATCACCCCCGCCGCATTTGCCGAGCGCTACGTGCCCACCATGCGCGCCACTACGGATT
TCCGCGACATCGTGCTGCGCCTGGCGGATGACGACATCCGCCAACATCGGCGCGCGATGCTGCTGGTGCTCATCGGCTCG
GCAGGCGCCGTGGTGTCGGTGCTGGGCGCGCTGGCATGGATGATGATTTCGTTCCGCCGCAACGTGGTGAGGCCGTTTGT
CAACGCCACGCGGCTGATCGACGGGATTGCGCGAGGCAACTTGAGTGTGCACATCCCGACCGACTTTGCGCGGCGCGAGA
TCCGAGCGATGTTCGACGCGATCCGCGTGCTGCGCATCAATAGCATCGAGCGCCGCCGGCTGGAGGTGGAACGCGCGCAC
CTGATGCAGGAACTCTCGCGCATGGCCGAGACCGACCCGCTCACCCAGTTGCTCAACCGTCGCGCCTTTGAAGACCGCGC
CGGCGCGATGTGCAAATCGCCGCAGCCGAAGGCGCGGCTCATTGCACTGATCATGTTCGACATCGACCACTTCAAGCGCA
TCAACGATACGTACGGCCACGCCGTGGGCGATGAAGCGCTGCGCACCGTTGCAAGACTGTGCCGCTCTGAAGGCCCGTCC
GCCGACATGGTGGCGCGCATCGGCGGCGAGGAATTCGCAGTGATGGTGTGGGCGGACAGCCTCGCGCAGGCGCGCGCGGT
GGCCGATCATCTGCGCCATCGCATTGCCGAGGTGACAGTGCCCACCGGCACCGATCTGCCCTGCAGCATGACGGCCAGCT
TTGGCGTGGCGGCAGCGCCCGCGGCGGATGGCCCCGAACTGGAGCCGCTGCTGCGGCGGGCAGACCATCTGCTCTATGCT
GCCAAGCTGGCGGGGCGCAACTGCGTGATGGCGGACCGCCCGCCTGCGTCGCCAGACGTGGCGCTCGCGGCGGATTGA

Upstream 100 bases:

>100_bases
GTGCGCCGGCACCTGTGCAACCCGTTCGCAACCGCCTTCCGGGCCGCCCAACCGCCCGCCAAGACGTTCCACCACTCCGT
TCATGTCTTCTGAAACGTCG

Downstream 100 bases:

>100_bases
TGTGCTGGGCGCGCCAGGCCTGGTTGGCGCGCCGATACTCAATACTCCGCAGGCGCCTTCCCCACAAGGCGGCGGGAGTC
GCGTGTGTCTGGCTTGCCGG

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 585; Mature: 585

Protein sequence:

>585_residues
MDRRFGASVAIVLVPVLSLSCWLLGYAWLAYGRADDSARSVQVLRMTLLAMEKVSAERGPTNGVLGEDLPVPAERSAALQ
RMRAVSDEHVAQLLDALGPEHCPGCEADIKAARRAQTHLAAARANIDRLTALPLRSRSSDDLADGVNRMIAVIPEFLPIV
NARTANITRGDPDVLNCLTLARLSADLREYAGQLGSRFTGALAMHRMLTFDEQLAIERTQGRIDQLRSMIETRVGAHSAL
NQHALATLGAQYFGDGLRYVAAVRAKASQPGGVDITPAAFAERYVPTMRATTDFRDIVLRLADDDIRQHRRAMLLVLIGS
AGAVVSVLGALAWMMISFRRNVVRPFVNATRLIDGIARGNLSVHIPTDFARREIRAMFDAIRVLRINSIERRRLEVERAH
LMQELSRMAETDPLTQLLNRRAFEDRAGAMCKSPQPKARLIALIMFDIDHFKRINDTYGHAVGDEALRTVARLCRSEGPS
ADMVARIGGEEFAVMVWADSLAQARAVADHLRHRIAEVTVPTGTDLPCSMTASFGVAAAPAADGPELEPLLRRADHLLYA
AKLAGRNCVMADRPPASPDVALAAD

Sequences:

>Translated_585_residues
MDRRFGASVAIVLVPVLSLSCWLLGYAWLAYGRADDSARSVQVLRMTLLAMEKVSAERGPTNGVLGEDLPVPAERSAALQ
RMRAVSDEHVAQLLDALGPEHCPGCEADIKAARRAQTHLAAARANIDRLTALPLRSRSSDDLADGVNRMIAVIPEFLPIV
NARTANITRGDPDVLNCLTLARLSADLREYAGQLGSRFTGALAMHRMLTFDEQLAIERTQGRIDQLRSMIETRVGAHSAL
NQHALATLGAQYFGDGLRYVAAVRAKASQPGGVDITPAAFAERYVPTMRATTDFRDIVLRLADDDIRQHRRAMLLVLIGS
AGAVVSVLGALAWMMISFRRNVVRPFVNATRLIDGIARGNLSVHIPTDFARREIRAMFDAIRVLRINSIERRRLEVERAH
LMQELSRMAETDPLTQLLNRRAFEDRAGAMCKSPQPKARLIALIMFDIDHFKRINDTYGHAVGDEALRTVARLCRSEGPS
ADMVARIGGEEFAVMVWADSLAQARAVADHLRHRIAEVTVPTGTDLPCSMTASFGVAAAPAADGPELEPLLRRADHLLYA
AKLAGRNCVMADRPPASPDVALAAD
>Mature_585_residues
MDRRFGASVAIVLVPVLSLSCWLLGYAWLAYGRADDSARSVQVLRMTLLAMEKVSAERGPTNGVLGEDLPVPAERSAALQ
RMRAVSDEHVAQLLDALGPEHCPGCEADIKAARRAQTHLAAARANIDRLTALPLRSRSSDDLADGVNRMIAVIPEFLPIV
NARTANITRGDPDVLNCLTLARLSADLREYAGQLGSRFTGALAMHRMLTFDEQLAIERTQGRIDQLRSMIETRVGAHSAL
NQHALATLGAQYFGDGLRYVAAVRAKASQPGGVDITPAAFAERYVPTMRATTDFRDIVLRLADDDIRQHRRAMLLVLIGS
AGAVVSVLGALAWMMISFRRNVVRPFVNATRLIDGIARGNLSVHIPTDFARREIRAMFDAIRVLRINSIERRRLEVERAH
LMQELSRMAETDPLTQLLNRRAFEDRAGAMCKSPQPKARLIALIMFDIDHFKRINDTYGHAVGDEALRTVARLCRSEGPS
ADMVARIGGEEFAVMVWADSLAQARAVADHLRHRIAEVTVPTGTDLPCSMTASFGVAAAPAADGPELEPLLRRADHLLYA
AKLAGRNCVMADRPPASPDVALAAD

Specific function: Involves in the regulation of cellulose production [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=180, Percent_Identity=36.1111111111111, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI1787262, Length=170, Percent_Identity=36.4705882352941, Blast_Score=100, Evalue=5e-22,
Organism=Escherichia coli, GI87081881, Length=229, Percent_Identity=33.6244541484716, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI145693134, Length=176, Percent_Identity=34.0909090909091, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1787802, Length=261, Percent_Identity=30.2681992337165, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI1788085, Length=175, Percent_Identity=31.4285714285714, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1787056, Length=166, Percent_Identity=30.7228915662651, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1786584, Length=181, Percent_Identity=32.0441988950276, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1788381, Length=184, Percent_Identity=31.5217391304348, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787816, Length=176, Percent_Identity=33.5227272727273, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788956, Length=171, Percent_Identity=32.1637426900585, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1787541, Length=173, Percent_Identity=32.9479768786127, Blast_Score=72, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 63911; Mature: 63911

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50885 HAMP ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRRFGASVAIVLVPVLSLSCWLLGYAWLAYGRADDSARSVQVLRMTLLAMEKVSAERGP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
TNGVLGEDLPVPAERSAALQRMRAVSDEHVAQLLDALGPEHCPGCEADIKAARRAQTHLA
CCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
AARANIDRLTALPLRSRSSDDLADGVNRMIAVIPEFLPIVNARTANITRGDPDVLNCLTL
HHHHCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
ARLSADLREYAGQLGSRFTGALAMHRMLTFDEQLAIERTQGRIDQLRSMIETRVGAHSAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NQHALATLGAQYFGDGLRYVAAVRAKASQPGGVDITPAAFAERYVPTMRATTDFRDIVLR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHCCHHHHHHHHH
LADDDIRQHRRAMLLVLIGSAGAVVSVLGALAWMMISFRRNVVRPFVNATRLIDGIARGN
HHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LSVHIPTDFARREIRAMFDAIRVLRINSIERRRLEVERAHLMQELSRMAETDPLTQLLNR
CEEECCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
RAFEDRAGAMCKSPQPKARLIALIMFDIDHFKRINDTYGHAVGDEALRTVARLCRSEGPS
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
ADMVARIGGEEFAVMVWADSLAQARAVADHLRHRIAEVTVPTGTDLPCSMTASFGVAAAP
HHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHCCCCEECC
AADGPELEPLLRRADHLLYAAKLAGRNCVMADRPPASPDVALAAD
CCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCEEECC
>Mature Secondary Structure
MDRRFGASVAIVLVPVLSLSCWLLGYAWLAYGRADDSARSVQVLRMTLLAMEKVSAERGP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
TNGVLGEDLPVPAERSAALQRMRAVSDEHVAQLLDALGPEHCPGCEADIKAARRAQTHLA
CCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
AARANIDRLTALPLRSRSSDDLADGVNRMIAVIPEFLPIVNARTANITRGDPDVLNCLTL
HHHHCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
ARLSADLREYAGQLGSRFTGALAMHRMLTFDEQLAIERTQGRIDQLRSMIETRVGAHSAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NQHALATLGAQYFGDGLRYVAAVRAKASQPGGVDITPAAFAERYVPTMRATTDFRDIVLR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHCCHHHHHHHHH
LADDDIRQHRRAMLLVLIGSAGAVVSVLGALAWMMISFRRNVVRPFVNATRLIDGIARGN
HHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LSVHIPTDFARREIRAMFDAIRVLRINSIERRRLEVERAHLMQELSRMAETDPLTQLLNR
CEEECCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
RAFEDRAGAMCKSPQPKARLIALIMFDIDHFKRINDTYGHAVGDEALRTVARLCRSEGPS
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
ADMVARIGGEEFAVMVWADSLAQARAVADHLRHRIAEVTVPTGTDLPCSMTASFGVAAAP
HHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHCCCCEECC
AADGPELEPLLRRADHLLYAAKLAGRNCVMADRPPASPDVALAAD
CCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]