Click here to switch to the map view.

The map label for this gene is 187927360

Identifier: 187927360

GI number: 187927360

Start: 266769

End: 268706

Strand: Reverse

Name: 187927360

Synonym: Rpic_0253

Alternate gene names: NA

Gene position: 268706-266769 (Counterclockwise)

Preceding gene: 187927364

Following gene: 187927359

Centisome position: 6.82

GC content: 67.39

Gene sequence:

>1938_bases
ATGCCTCACGCCCTTTCCCGTTCGCCTGCGACGCAACGCCCGCGGCGATTCCTGCGCAGCCGAACGGCCCTGCTGGCCGC
GCTGGTGGTGGGAGGGCTGACGAGCTTGCCGGCGTGGTCGTCGCAGTCGGTGGCTGGCGCCCCGCTCATTGCCCAGGCCG
CGCAGGAAGGCGGCACGGGCGGCCGCGCAGCCATCCAGATTGAACGCTCGCGCCCACGCCCCGGCCTGCTGAGGTCCGAG
CGCACCGATTTGCCGCGCGTCGCGCTCACTGAAGACATCATGTACCGCGTGCTGGCCTCGGAAGTGTCGCTGCAGCGCGG
GCTGGTCGAACCGGCATACCGAACCTACCTCGGGCTCGCGCAAGACACGCGCGACCCCCGCTTTGCCCAGCGCGCCACCG
AGATCGCATTTCTGACGCGCTCCCCCGCGCAAGCACTGACCGCCACGCGCCTGTGGGTAGAGCTGTCGCCGACGTCCATG
CCGGCACGCCAGGTGCAGCAGCTCCTGCTGGTGGCAACGGGTCAGTGGTCGGAAGTCGAACCGATGCTCCAAGCGCAGTT
GAACAAGGTCTCGCCTGGCCAGCGTGCCGATGCCCTGCTGCAATTGCAGCAGCAGATGTCCAAGAGCAGCGATCCGGCGG
GTGCCGTAGGCGCACTGCAGCGCATCGCCTCGCACGACATGCAGCGCCCCGAAACGCACCTGGCCTTGGCCCGCGCGAAG
GTCGCCGCCAAGGACACCGCCGGCGCACTGACGGAACTGGACACCGCGCTCAAGCTGCGTCCCGGGTATGAAGACGCCGC
CATCCTCGCCGCCGAACTGCGTGCCGACAGCGACCCCGATGCCGCCATCACTGGCCTGCGCAGCTTCCTGAAAGCCGCGC
CAGCGTCCATCGACGGCCACTTGGCGCTCGCCCGCATGTACCTCGTGCGCAATCAGCAGGACAAGGCGCGCGCTGAATTC
GAAACGCTCAAGAAGATCGCGCCCAACGATGCGCGCATCACGCTTGCCCTGGGCCTGCTGAATTTGCAGCAGCGCCAGTA
CGACGACGCCGAGCGTTACCTGAAGGAATACGTCACGGCCACCGCCAAGTCGCCCACCCTGAGCCCAGAACCCGGCTACC
AGGGCCTCGCCCAGTTGGCCGAGGAGAAGCGAGACTACGCCGGCGCGCTCGGCTGGGTCGACAAGATCACCGGTTCGGCC
AATGGCGACACCGATGGCCAGACCGCGCTGGCAGCCGGCATCAAGCGCGGCCAGTTGCTCGGCAAGCTGCGCCGTATCGA
CGAGGCGCAACAGACCTTCGATGAACTCGTCGCCGATTCCGAAGACGTGCCCGATGGCCCGCGCCGCCAGGCCCTGATGG
ACGGCATCCGCCAGGCCGAAATCGGCATGCTGATGGACGCCAAGGCCTACGGCCGCGCCCGCGCCCGCGTCAATGAGCTG
CTCAAGAACGATCCGGATAACGTCGAGTATTCGTACCAACTGGCGATGCTCGAAGAGCACGACGGCCACTACGACAACAT
GGAGACGCTGCTGCGCAAGGTGATCGACCTGCGTCCCGGCCAGGCCATCGGCTACAACGCGCTCGGCTACTCGCTGGCCG
ATCGCAGCGTGCGCCTGCAGGAGGCGCAGGAGCTACTGGAGAAAGCCGTGTCGCTGGCGCCGGACGATCCCTACATCGCC
GACAGCCTCGGCTGGGTCAAGTACCGTCGCGGCGATCTGCCCGCCGCCACTGACATCCTGCGCAAGGCGTGGGCTACCGC
CCCGCAAGCCGAAATCGGTGCGCACCTGGGCGAAGTGCTGTGGCAATCGGGCAAGCAGGACGACGCACGCCAGATCTGGA
CCGAAGCGTCCAAGCTCGACGTAAACGACACCACGCTGCGCGACACGCTGCGCCGCTTCGGCCAGCCGGTGCCCAATGTT
CCCGTGAGTACAAATTGA

Upstream 100 bases:

>100_bases
GAACCTCCATCCCATGTGCTGCTCCAACTTTTTTTACGATGCGGACGATTGTAGCGGTCAGGCTACAATGCCCTGACCCC
CTATCCGGAGCTTCGAGACC

Downstream 100 bases:

>100_bases
TGGCAATGCGGTTCGCGCACGCGCTTGGCGCGCTGATGCTCGGCGCTGGCTGCGCGCTGTTCAGCGGCTGCGCAAGCTTG
CGGCCAGCCAACGATCTCTT

Product: tetratricopeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 645; Mature: 644

Protein sequence:

>645_residues
MPHALSRSPATQRPRRFLRSRTALLAALVVGGLTSLPAWSSQSVAGAPLIAQAAQEGGTGGRAAIQIERSRPRPGLLRSE
RTDLPRVALTEDIMYRVLASEVSLQRGLVEPAYRTYLGLAQDTRDPRFAQRATEIAFLTRSPAQALTATRLWVELSPTSM
PARQVQQLLLVATGQWSEVEPMLQAQLNKVSPGQRADALLQLQQQMSKSSDPAGAVGALQRIASHDMQRPETHLALARAK
VAAKDTAGALTELDTALKLRPGYEDAAILAAELRADSDPDAAITGLRSFLKAAPASIDGHLALARMYLVRNQQDKARAEF
ETLKKIAPNDARITLALGLLNLQQRQYDDAERYLKEYVTATAKSPTLSPEPGYQGLAQLAEEKRDYAGALGWVDKITGSA
NGDTDGQTALAAGIKRGQLLGKLRRIDEAQQTFDELVADSEDVPDGPRRQALMDGIRQAEIGMLMDAKAYGRARARVNEL
LKNDPDNVEYSYQLAMLEEHDGHYDNMETLLRKVIDLRPGQAIGYNALGYSLADRSVRLQEAQELLEKAVSLAPDDPYIA
DSLGWVKYRRGDLPAATDILRKAWATAPQAEIGAHLGEVLWQSGKQDDARQIWTEASKLDVNDTTLRDTLRRFGQPVPNV
PVSTN

Sequences:

>Translated_645_residues
MPHALSRSPATQRPRRFLRSRTALLAALVVGGLTSLPAWSSQSVAGAPLIAQAAQEGGTGGRAAIQIERSRPRPGLLRSE
RTDLPRVALTEDIMYRVLASEVSLQRGLVEPAYRTYLGLAQDTRDPRFAQRATEIAFLTRSPAQALTATRLWVELSPTSM
PARQVQQLLLVATGQWSEVEPMLQAQLNKVSPGQRADALLQLQQQMSKSSDPAGAVGALQRIASHDMQRPETHLALARAK
VAAKDTAGALTELDTALKLRPGYEDAAILAAELRADSDPDAAITGLRSFLKAAPASIDGHLALARMYLVRNQQDKARAEF
ETLKKIAPNDARITLALGLLNLQQRQYDDAERYLKEYVTATAKSPTLSPEPGYQGLAQLAEEKRDYAGALGWVDKITGSA
NGDTDGQTALAAGIKRGQLLGKLRRIDEAQQTFDELVADSEDVPDGPRRQALMDGIRQAEIGMLMDAKAYGRARARVNEL
LKNDPDNVEYSYQLAMLEEHDGHYDNMETLLRKVIDLRPGQAIGYNALGYSLADRSVRLQEAQELLEKAVSLAPDDPYIA
DSLGWVKYRRGDLPAATDILRKAWATAPQAEIGAHLGEVLWQSGKQDDARQIWTEASKLDVNDTTLRDTLRRFGQPVPNV
PVSTN
>Mature_644_residues
PHALSRSPATQRPRRFLRSRTALLAALVVGGLTSLPAWSSQSVAGAPLIAQAAQEGGTGGRAAIQIERSRPRPGLLRSER
TDLPRVALTEDIMYRVLASEVSLQRGLVEPAYRTYLGLAQDTRDPRFAQRATEIAFLTRSPAQALTATRLWVELSPTSMP
ARQVQQLLLVATGQWSEVEPMLQAQLNKVSPGQRADALLQLQQQMSKSSDPAGAVGALQRIASHDMQRPETHLALARAKV
AAKDTAGALTELDTALKLRPGYEDAAILAAELRADSDPDAAITGLRSFLKAAPASIDGHLALARMYLVRNQQDKARAEFE
TLKKIAPNDARITLALGLLNLQQRQYDDAERYLKEYVTATAKSPTLSPEPGYQGLAQLAEEKRDYAGALGWVDKITGSAN
GDTDGQTALAAGIKRGQLLGKLRRIDEAQQTFDELVADSEDVPDGPRRQALMDGIRQAEIGMLMDAKAYGRARARVNELL
KNDPDNVEYSYQLAMLEEHDGHYDNMETLLRKVIDLRPGQAIGYNALGYSLADRSVRLQEAQELLEKAVSLAPDDPYIAD
SLGWVKYRRGDLPAATDILRKAWATAPQAEIGAHLGEVLWQSGKQDDARQIWTEASKLDVNDTTLRDTLRRFGQPVPNVP
VSTN

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 5 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011717
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR013105
- InterPro:   IPR019734 [H]

Pfam domain/function: PF07719 TPR_2; PF07721 TPR_4 [H]

EC number: NA

Molecular weight: Translated: 70546; Mature: 70414

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHALSRSPATQRPRRFLRSRTALLAALVVGGLTSLPAWSSQSVAGAPLIAQAAQEGGTG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCHHHHHHHHCCCCC
GRAAIQIERSRPRPGLLRSERTDLPRVALTEDIMYRVLASEVSLQRGLVEPAYRTYLGLA
CEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
QDTRDPRFAQRATEIAFLTRSPAQALTATRLWVELSPTSMPARQVQQLLLVATGQWSEVE
HCCCCCHHHHHHHHHHHHCCCHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHCCCCHHHH
PMLQAQLNKVSPGQRADALLQLQQQMSKSSDPAGAVGALQRIASHDMQRPETHLALARAK
HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
VAAKDTAGALTELDTALKLRPGYEDAAILAAELRADSDPDAAITGLRSFLKAAPASIDGH
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHH
LALARMYLVRNQQDKARAEFETLKKIAPNDARITLALGLLNLQQRQYDDAERYLKEYVTA
HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCHHHHHHHHHHHHH
TAKSPTLSPEPGYQGLAQLAEEKRDYAGALGWVDKITGSANGDTDGQTALAAGIKRGQLL
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
GKLRRIDEAQQTFDELVADSEDVPDGPRRQALMDGIRQAEIGMLMDAKAYGRARARVNEL
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
LKNDPDNVEYSYQLAMLEEHDGHYDNMETLLRKVIDLRPGQAIGYNALGYSLADRSVRLQ
HHCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
EAQELLEKAVSLAPDDPYIADSLGWVKYRRGDLPAATDILRKAWATAPQAEIGAHLGEVL
HHHHHHHHHHHCCCCCCCHHCCCCHHHEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
WQSGKQDDARQIWTEASKLDVNDTTLRDTLRRFGQPVPNVPVSTN
HHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
PHALSRSPATQRPRRFLRSRTALLAALVVGGLTSLPAWSSQSVAGAPLIAQAAQEGGTG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCHHHHHHHHCCCCC
GRAAIQIERSRPRPGLLRSERTDLPRVALTEDIMYRVLASEVSLQRGLVEPAYRTYLGLA
CEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
QDTRDPRFAQRATEIAFLTRSPAQALTATRLWVELSPTSMPARQVQQLLLVATGQWSEVE
HCCCCCHHHHHHHHHHHHCCCHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHCCCCHHHH
PMLQAQLNKVSPGQRADALLQLQQQMSKSSDPAGAVGALQRIASHDMQRPETHLALARAK
HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
VAAKDTAGALTELDTALKLRPGYEDAAILAAELRADSDPDAAITGLRSFLKAAPASIDGH
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHH
LALARMYLVRNQQDKARAEFETLKKIAPNDARITLALGLLNLQQRQYDDAERYLKEYVTA
HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCHHHHHHHHHHHHH
TAKSPTLSPEPGYQGLAQLAEEKRDYAGALGWVDKITGSANGDTDGQTALAAGIKRGQLL
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
GKLRRIDEAQQTFDELVADSEDVPDGPRRQALMDGIRQAEIGMLMDAKAYGRARARVNEL
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
LKNDPDNVEYSYQLAMLEEHDGHYDNMETLLRKVIDLRPGQAIGYNALGYSLADRSVRLQ
HHCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
EAQELLEKAVSLAPDDPYIADSLGWVKYRRGDLPAATDILRKAWATAPQAEIGAHLGEVL
HHHHHHHHHHHCCCCCCCHHCCCCHHHEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
WQSGKQDDARQIWTEASKLDVNDTTLRDTLRRFGQPVPNVPVSTN
HHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7883699; 10984043 [H]