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The map label for this gene is comF [H]

Identifier: 187927323

GI number: 187927323

Start: 231374

End: 232096

Strand: Reverse

Name: comF [H]

Synonym: Rpic_0215

Alternate gene names: 187927323

Gene position: 232096-231374 (Counterclockwise)

Preceding gene: 187927331

Following gene: 187927322

Centisome position: 5.89

GC content: 67.91

Gene sequence:

>723_bases
ATGCATAAACACGCGTTATCGGCATGGTTTCGGGCAGGACTGCGCCATTTGTTGCCATGCGCCTGCGCGCTTTGCGGCGC
GGTTCAGGGCGACCTGGTGTGCAACGGCTGCACGGGCGACCTGGCCTCGCATCTGCACAGGCGGCGCTGCATCCAATGCG
CCATTGCACTGGATGCCCGGCACGCCGCCCGGCATTGCCGCACATGTTTGGCCGGCGCGCCCGACTTTGACGCGACCGTC
GTCATCGCCGACTACGCCTGGCCGCTCGACCACCTTGTCACTGGATTGAAATTTCGGGCGCAATTGCCATTGGCAGATTG
GCTGGCAGCCCAATTGGGCAACGCACTCGCGGCGGCGCCGGGCGACCTGCCGGACATGCTGCTGCCAGTGCCGCTTTCGC
CGGCCCGCCTGCGCTCGCGCGGCTACAACCAGGCATGGGAGGTTGCCCGCCGGATCGCCCGCCGATTGGACATTCCGGCC
CACGCCGGCGCCCTGCAGCGTGTGCGCGACAACGTCGCGCAGGCCACGCTGGATCGCGCCGAGCGGCTGGCCAACCTCCA
CGGCGCATTTGTCGTTGCCGAGCCGGCGCGCATCGCGGGGCGTCACATCGGAGTCGTTGACGATGTGATGACCACCGGCA
CGACCCTTGGCGAGATCGCCACGCAGCTCAAACGCGCCGGCGCGACCCGCGTCACCAACGTTGTCGCCTTGCGCACGCCT
TGA

Upstream 100 bases:

>100_bases
CGGGACGGAACACTGCGGTCGCCAAGTATACCGGCCCGCAGTTTGAGGCGCCGTCTGATAGCGCAGAAGCCGCAAATCGG
CTTGGATAGCGGCTTTTTGC

Downstream 100 bases:

>100_bases
TCACGTGCTTGTGCGACATTGTGTCGCGCTGTTTGTGCCAAGCTGTGGCGGGGTGACAACCCTTCCCAATGTGGATAAGC
TCGCCGCCGAAATTCCTCCT

Product: putative competence protein F-like protein

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MHKHALSAWFRAGLRHLLPCACALCGAVQGDLVCNGCTGDLASHLHRRRCIQCAIALDARHAARHCRTCLAGAPDFDATV
VIADYAWPLDHLVTGLKFRAQLPLADWLAAQLGNALAAAPGDLPDMLLPVPLSPARLRSRGYNQAWEVARRIARRLDIPA
HAGALQRVRDNVAQATLDRAERLANLHGAFVVAEPARIAGRHIGVVDDVMTTGTTLGEIATQLKRAGATRVTNVVALRTP

Sequences:

>Translated_240_residues
MHKHALSAWFRAGLRHLLPCACALCGAVQGDLVCNGCTGDLASHLHRRRCIQCAIALDARHAARHCRTCLAGAPDFDATV
VIADYAWPLDHLVTGLKFRAQLPLADWLAAQLGNALAAAPGDLPDMLLPVPLSPARLRSRGYNQAWEVARRIARRLDIPA
HAGALQRVRDNVAQATLDRAERLANLHGAFVVAEPARIAGRHIGVVDDVMTTGTTLGEIATQLKRAGATRVTNVVALRTP
>Mature_240_residues
MHKHALSAWFRAGLRHLLPCACALCGAVQGDLVCNGCTGDLASHLHRRRCIQCAIALDARHAARHCRTCLAGAPDFDATV
VIADYAWPLDHLVTGLKFRAQLPLADWLAAQLGNALAAAPGDLPDMLLPVPLSPARLRSRGYNQAWEVARRIARRLDIPA
HAGALQRVRDNVAQATLDRAERLANLHGAFVVAEPARIAGRHIGVVDDVMTTGTTLGEIATQLKRAGATRVTNVVALRTP

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=211, Percent_Identity=34.5971563981043, Blast_Score=88, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 25774; Mature: 25774

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKHALSAWFRAGLRHLLPCACALCGAVQGDLVCNGCTGDLASHLHRRRCIQCAIALDAR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHH
HAARHCRTCLAGAPDFDATVVIADYAWPLDHLVTGLKFRAQLPLADWLAAQLGNALAAAP
HHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHCCC
GDLPDMLLPVPLSPARLRSRGYNQAWEVARRIARRLDIPAHAGALQRVRDNVAQATLDRA
CCCCCCEECCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
ERLANLHGAFVVAEPARIAGRHIGVVDDVMTTGTTLGEIATQLKRAGATRVTNVVALRTP
HHHHHHCCCEEEECCHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCHHHHHEEEEECC
>Mature Secondary Structure
MHKHALSAWFRAGLRHLLPCACALCGAVQGDLVCNGCTGDLASHLHRRRCIQCAIALDAR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHH
HAARHCRTCLAGAPDFDATVVIADYAWPLDHLVTGLKFRAQLPLADWLAAQLGNALAAAP
HHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHCCC
GDLPDMLLPVPLSPARLRSRGYNQAWEVARRIARRLDIPAHAGALQRVRDNVAQATLDRA
CCCCCCEECCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
ERLANLHGAFVVAEPARIAGRHIGVVDDVMTTGTTLGEIATQLKRAGATRVTNVVALRTP
HHHHHHCCCEEEECCHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCHHHHHEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]