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The map label for this gene is ymdB [C]

Identifier: 187927299

GI number: 187927299

Start: 210346

End: 210858

Strand: Reverse

Name: ymdB [C]

Synonym: Rpic_0191

Alternate gene names: 187927299

Gene position: 210858-210346 (Counterclockwise)

Preceding gene: 187927302

Following gene: 187927298

Centisome position: 5.35

GC content: 66.86

Gene sequence:

>513_bases
ATGCCAATCTCTGTCACCGTCCGTGCCCTGCGTGCCGACATCACCACGCTCGACTGTGATGCCATCGTCAATGCGGCGAA
CAGCTCGCTGTTCGGCGGGGGCGGCGTGGACGGCGCCATCCACCGCGCGGCGGGGCCAGAACTGCTGGAGGCGTGCCGCG
CACTCCATGGCTGCCGCACCGGTGAAGCGAAACTCACGCCGGGTTTTCGCCTGCCTGCCCGCTACGTCATCCACACCGTC
GGGCCGATCTGGCACGGTGGCCGGCAGGACGAGGCGGCGTTGCTGGCCGCGTGCTATCGCAACAGCCTGGAACTGGCGCG
CAAGCACGAGGTGCGCAGCATCGCGTTTCCGTGCATCAGCACCGGTGTGTATGGCTTCCCGCCGCAGTTGGCTGCACCGA
TTGCCGTACGTGCCGCGCGCGAGCATGGCGCCGGCTTGGACGCAATCACCTTTTGCTGCTTTTCCGCCACTCACCTCGCT
CTGTACGAAGCCGCCCTCGCCAGCGATAAGTGA

Upstream 100 bases:

>100_bases
TTACTTTGACTGCCACATCGCCTCCTGTCGGTTTCCGGCCGGTTTCTGAGCCGCCTATTATCCGACACAGACGTCCGCTC
TCCCTATCAAGGACCGCGCC

Downstream 100 bases:

>100_bases
CGCACGCATCGCGCCATGGACGGATTGTCGCGGCGGACATGCGGCGCCGGCGCGTCGGGCCTACAATAGACGCTTGATTT
TTCTTCCTGACCCGTTGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MPISVTVRALRADITTLDCDAIVNAANSSLFGGGGVDGAIHRAAGPELLEACRALHGCRTGEAKLTPGFRLPARYVIHTV
GPIWHGGRQDEAALLAACYRNSLELARKHEVRSIAFPCISTGVYGFPPQLAAPIAVRAAREHGAGLDAITFCCFSATHLA
LYEAALASDK

Sequences:

>Translated_170_residues
MPISVTVRALRADITTLDCDAIVNAANSSLFGGGGVDGAIHRAAGPELLEACRALHGCRTGEAKLTPGFRLPARYVIHTV
GPIWHGGRQDEAALLAACYRNSLELARKHEVRSIAFPCISTGVYGFPPQLAAPIAVRAAREHGAGLDAITFCCFSATHLA
LYEAALASDK
>Mature_169_residues
PISVTVRALRADITTLDCDAIVNAANSSLFGGGGVDGAIHRAAGPELLEACRALHGCRTGEAKLTPGFRLPARYVIHTVG
PIWHGGRQDEAALLAACYRNSLELARKHEVRSIAFPCISTGVYGFPPQLAAPIAVRAAREHGAGLDAITFCCFSATHLAL
YEAALASDK

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=171, Percent_Identity=53.2163742690059, Blast_Score=174, Evalue=3e-44,
Organism=Homo sapiens, GI13569840, Length=169, Percent_Identity=52.6627218934911, Blast_Score=174, Evalue=5e-44,
Organism=Homo sapiens, GI207450721, Length=148, Percent_Identity=41.2162162162162, Blast_Score=117, Evalue=5e-27,
Organism=Homo sapiens, GI8923143, Length=148, Percent_Identity=41.2162162162162, Blast_Score=117, Evalue=6e-27,
Organism=Homo sapiens, GI20336746, Length=170, Percent_Identity=30, Blast_Score=93, Evalue=1e-19,
Organism=Homo sapiens, GI154813199, Length=140, Percent_Identity=38.5714285714286, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI93141018, Length=165, Percent_Identity=26.6666666666667, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI93141020, Length=165, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI4758496, Length=165, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI226371718, Length=137, Percent_Identity=32.8467153284672, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226371716, Length=137, Percent_Identity=32.8467153284672, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226371714, Length=137, Percent_Identity=32.8467153284672, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226371712, Length=137, Percent_Identity=32.8467153284672, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226371710, Length=137, Percent_Identity=32.8467153284672, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226371706, Length=137, Percent_Identity=32.8467153284672, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI1787283, Length=173, Percent_Identity=49.1329479768786, Blast_Score=152, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI17538214, Length=167, Percent_Identity=46.7065868263473, Blast_Score=128, Evalue=1e-30,
Organism=Drosophila melanogaster, GI24586353, Length=158, Percent_Identity=34.8101265822785, Blast_Score=86, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 17879; Mature: 17747

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPISVTVRALRADITTLDCDAIVNAANSSLFGGGGVDGAIHRAAGPELLEACRALHGCRT
CCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCC
GEAKLTPGFRLPARYVIHTVGPIWHGGRQDEAALLAACYRNSLELARKHEVRSIAFPCIS
CCCCCCCCCCCHHHHHHHHHCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGVYGFPPQLAAPIAVRAAREHGAGLDAITFCCFSATHLALYEAALASDK
CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PISVTVRALRADITTLDCDAIVNAANSSLFGGGGVDGAIHRAAGPELLEACRALHGCRT
CCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCC
GEAKLTPGFRLPARYVIHTVGPIWHGGRQDEAALLAACYRNSLELARKHEVRSIAFPCIS
CCCCCCCCCCCHHHHHHHHHCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGVYGFPPQLAAPIAVRAAREHGAGLDAITFCCFSATHLALYEAALASDK
CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]