Click here to switch to the map view.

The map label for this gene is 187927280

Identifier: 187927280

GI number: 187927280

Start: 189255

End: 190520

Strand: Direct

Name: 187927280

Synonym: Rpic_0172

Alternate gene names: NA

Gene position: 189255-190520 (Clockwise)

Preceding gene: 187927279

Following gene: 187927283

Centisome position: 4.8

GC content: 67.38

Gene sequence:

>1266_bases
ATGCGCGGCATCGGACGCTATGATGGACGGCTTTTTCCGGCCACGTCCGCTCCTCTTTCTAGCTCGCTCCTTCCGGTGAC
GGACTTCCACTCGCAACCCGCTGCACCCACCCAGCATCGCCACTCGCCGCTTGCGCGCGCCGGGCTGGGGTGGTTCGTGC
TGCTGGTCGTCTACGCAAGCCTGTATCCGTTTGCCGGCTGGACAGACACCGGCGTGTCGCCGTTCGCCTTCCTGAGCGCA
CCGCTGCCGCGCTACAACACCGCCTTCGACATGCTCACCAACGTGTGGGGCTACATGCCGCTGGGCATGCTGACGGTGCT
GGCGCTGCATCCACGCATCACCGGCTGGCGCGCGGTCTTGCTGGCGCTGCTGGCGGGGTTGCTGCTCTCCGGCGCGATGG
AGGCGATCCAGACCTATCTGCCCACGCGCGTGTCCTCCAATGTCGATCTGGCGACGAACACGCTGGGCGCCTTGCTGGGC
GGCCTCGTCATGTTGCCTTTTGCGGCGCGGCTGATCGACCGCGGCGGGCTGCGCCGCCTGCGCCGCCGGTGGTTCGAGCC
ACATGCGACCTTTGCCATCCTGCTGATGCTGGTGTGGCCGTTCGCACAGATTTTTCCGCAGGAATTCCTCTTCAGCATGG
GCGGAGTGATCCGCAGCATCCTGCTCGATCCATCGCCGGATGCGTTTGTGGTCAACCTCGTCAACGGCTGGTTTCCGGAG
CTGTTCGACTGGCAGGACAAGCTGACGGCGCACCCGGAAGCACTGCAGCGCCAGGAACTGCTGGAAGCGCTCATCACCGC
CTGCAGCTGGATCGGCACGGGGCTGCTGGCCAGCGTGGCCATGCGCAGCGGTGCGCCCATGCTGCGCCTGCTGGCTGCGC
TGCTGGCCGGCGCGCTGCTGGTCAAGGCGGGGGCGACGGTGCTGCAGTTTCCGCTGGGCGGCGCGTGGGACTGGCTTTCG
TCCGGCGCGCGTTTCGGGTTGATTGTCGGCTCGCTGGTGCTCGTGCTGCTGGTGCGGCTGCCGCGCTGGTTGCGCGGCGC
GCTGGCCATGACGCTGCTGATTGCGCTGATCATCCTGTCCAACGTGCTGCCGCCGAGCCCGTATTCGTGGGTGTCGGCGC
AAAGCTGGCGGCTGGGGCGCTTCGTCCATTTCAACAGCCTGTCGCAATGGATCGGCTGGCTGTGGCCGTTTCTGGGCCTC
GGCTATCTCGCCTGGCGCGCCGAGCAGACGCAGCTGCAGCGGCGCGCCGGACGTCACGCGCGTTGA

Upstream 100 bases:

>100_bases
CGGCGTCCGCCTCTTCGACACCGGCAACGCCCGGCGCTGCACTTGGCACGCGCCGGCGCTAATACCGCCACCTCTGAACC
GGATGGAGGAACCATCCGTG

Downstream 100 bases:

>100_bases
GTGCCCGCCGCAGCAGATGCGGGATGCGGTGAGGCAGCGCGCCGCACCGCAATCAGTGCTGCCAGCGCCGCCAGGTACAT
CGCCGCCATGGCGACAAAAC

Product: VanZ family protein

Products: NA

Alternate protein names: VanZ Like Protein; Transmembrane Protein; Vanz Family Protein

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MRGIGRYDGRLFPATSAPLSSSLLPVTDFHSQPAAPTQHRHSPLARAGLGWFVLLVVYASLYPFAGWTDTGVSPFAFLSA
PLPRYNTAFDMLTNVWGYMPLGMLTVLALHPRITGWRAVLLALLAGLLLSGAMEAIQTYLPTRVSSNVDLATNTLGALLG
GLVMLPFAARLIDRGGLRRLRRRWFEPHATFAILLMLVWPFAQIFPQEFLFSMGGVIRSILLDPSPDAFVVNLVNGWFPE
LFDWQDKLTAHPEALQRQELLEALITACSWIGTGLLASVAMRSGAPMLRLLAALLAGALLVKAGATVLQFPLGGAWDWLS
SGARFGLIVGSLVLVLLVRLPRWLRGALAMTLLIALIILSNVLPPSPYSWVSAQSWRLGRFVHFNSLSQWIGWLWPFLGL
GYLAWRAEQTQLQRRAGRHAR

Sequences:

>Translated_421_residues
MRGIGRYDGRLFPATSAPLSSSLLPVTDFHSQPAAPTQHRHSPLARAGLGWFVLLVVYASLYPFAGWTDTGVSPFAFLSA
PLPRYNTAFDMLTNVWGYMPLGMLTVLALHPRITGWRAVLLALLAGLLLSGAMEAIQTYLPTRVSSNVDLATNTLGALLG
GLVMLPFAARLIDRGGLRRLRRRWFEPHATFAILLMLVWPFAQIFPQEFLFSMGGVIRSILLDPSPDAFVVNLVNGWFPE
LFDWQDKLTAHPEALQRQELLEALITACSWIGTGLLASVAMRSGAPMLRLLAALLAGALLVKAGATVLQFPLGGAWDWLS
SGARFGLIVGSLVLVLLVRLPRWLRGALAMTLLIALIILSNVLPPSPYSWVSAQSWRLGRFVHFNSLSQWIGWLWPFLGL
GYLAWRAEQTQLQRRAGRHAR
>Mature_421_residues
MRGIGRYDGRLFPATSAPLSSSLLPVTDFHSQPAAPTQHRHSPLARAGLGWFVLLVVYASLYPFAGWTDTGVSPFAFLSA
PLPRYNTAFDMLTNVWGYMPLGMLTVLALHPRITGWRAVLLALLAGLLLSGAMEAIQTYLPTRVSSNVDLATNTLGALLG
GLVMLPFAARLIDRGGLRRLRRRWFEPHATFAILLMLVWPFAQIFPQEFLFSMGGVIRSILLDPSPDAFVVNLVNGWFPE
LFDWQDKLTAHPEALQRQELLEALITACSWIGTGLLASVAMRSGAPMLRLLAALLAGALLVKAGATVLQFPLGGAWDWLS
SGARFGLIVGSLVLVLLVRLPRWLRGALAMTLLIALIILSNVLPPSPYSWVSAQSWRLGRFVHFNSLSQWIGWLWPFLGL
GYLAWRAEQTQLQRRAGRHAR

Specific function: Unknown

COG id: COG5652

COG function: function code S; Predicted integral membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46407; Mature: 46407

Theoretical pI: Translated: 11.47; Mature: 11.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGIGRYDGRLFPATSAPLSSSLLPVTDFHSQPAAPTQHRHSPLARAGLGWFVLLVVYAS
CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHH
LYPFAGWTDTGVSPFAFLSAPLPRYNTAFDMLTNVWGYMPLGMLTVLALHPRITGWRAVL
HCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LALLAGLLLSGAMEAIQTYLPTRVSSNVDLATNTLGALLGGLVMLPFAARLIDRGGLRRL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRRWFEPHATFAILLMLVWPFAQIFPQEFLFSMGGVIRSILLDPSPDAFVVNLVNGWFPE
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHCCHH
LFDWQDKLTAHPEALQRQELLEALITACSWIGTGLLASVAMRSGAPMLRLLAALLAGALL
HHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VKAGATVLQFPLGGAWDWLSSGARFGLIVGSLVLVLLVRLPRWLRGALAMTLLIALIILS
HHCCCHHEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NVLPPSPYSWVSAQSWRLGRFVHFNSLSQWIGWLWPFLGLGYLAWRAEQTQLQRRAGRHA
HCCCCCCCCCCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
R
C
>Mature Secondary Structure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C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA