Click here to switch to the map view.

The map label for this gene is 187927269

Identifier: 187927269

GI number: 187927269

Start: 179053

End: 180210

Strand: Direct

Name: 187927269

Synonym: Rpic_0161

Alternate gene names: NA

Gene position: 179053-180210 (Clockwise)

Preceding gene: 187927268

Following gene: 187927271

Centisome position: 4.54

GC content: 68.91

Gene sequence:

>1158_bases
ATGATGGGCGGCGGTGCGCGTGCCGCCTATCAGGTCGGAGTGCTGCGCGGCATCGCGGGGTTGGCGCGCGAGTATGCGCC
GGGCGTGGCACGTACGCCGTTCGACGTCATTTGCGGGACATCGGCGGGTGCGATCAACAGTCTGGGCTTGGCCCGCGGCG
CGCAGGATTTCACGCTTGCCACCGAGGCGCTCACCCAGCTCTGGGGCACCCTGCATGCCGATCGTGTCTATCGCACGGAC
GTCGGCCGCGTGGGCTCCAGCGGCGCGCGCTGGCTGACCGCGCTGGCGTTCGGCTGGATGACTGGCCACACGCCGCGCGC
CCTGTTCGACAACACGCCGCTGCGCGAGCTGCTCGAATCGCAACACGACGGCGAGCAGGTGCAGGCCGCCTTCGACGCTG
GAGCGCTGCGCGCGCTGGCCATTACTGCGCTGTCATACACCACCGGGCGCCACGTCACGTTCTATCAATCGCCGCATGTC
GTGCTGCCGTGGCGGCGGTCGCAGCGGATTGCGGTGTCGGACGAGATCGGCGTGTCGCACATGCTGGCGTCGTCGAGCAT
CCCGTTCGTCTTCCCGGCAGAGCCGGTGCCGCTCGAAGGTAACGACGAATGGTTCGGCGACGGCACGATGCGCCAGATGT
CGCCGTTGAGCCCCGCCATTCATCTGGGCGCGAATCGCATTCTGGTGGTGGGCGCCGCGTCCCGCTCGCAGCCGGGCTGG
TACGACACGGTGCCGGCGTCCGGGTATCCGTCGCTTGCGCAGATTGCGGGGCAGGCGCTGGCAAGCATCTTCCTCGACGG
GCTTTCGGCCGATATCGAGCGGCTGCAGCACGTCAACGCCATGGTGGCCCGCAACCCCGAGATTGCCGACGCGCGCGACG
GCTGGCGCAAGATCGAAGTGCTGGTGATGGCGCCGTCCGAGCGCATCGAACTGATTGCCTCGCGCCACGTGCAGCGCCTG
CCTGGCACGGTGCGCGCGCTGCTCAAGCCGCTGGGCGGCACCGAGGCGCGCGGGGCGGCATTTGCGAGCTATCTGCTCTT
CGAACCCGAGTTCACGCAGGAACTGATCGACCTGGGCGAGCGCGATGTGCAGGCCCGCCGCGACGAACTGGCCGCGTTCC
TGTACGGCGCGATTCCGGACACGATGCGCGCAGCCTGA

Upstream 100 bases:

>100_bases
CAAGAAGACTGCTGCCAAGAAAGCGCCGGCGAAATCTGTGCCGCGCAAGCCCACCAACGACACCCCCTGATCGATGTCGA
CAGACTGCACTGCACTCTTG

Downstream 100 bases:

>100_bases
TCAGCGGGACGAGCGGGTCGATGGTTCAGCCAGCAGTGCGTCGATGCGTTTGATGAGCGCTGGGTCGCTCGGCTCGACAC
TGCTGGGGAACACTGCCGCC

Product: Patatin

Products: NA

Alternate protein names: Patatin Family Protein; Alpha-Beta Hydrolase Family Esterase; Phospholipase Patatin Family; Patatin-Like Phospholipase Family; Patatin Like Phospholipase; Patatin-Like Phospholipase; Patatin Family Phospholipase; Patatin-Like Phospholipase Family Protein; Lipid Acyl Hydrolase; Esterase Of Alpha-Beta Hydrolase Superfamily Protein; Phospholipase Patatin Family Protein; Phospholipase; Alpha-Beta Hydrolase Superfamily Protein

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MMGGGARAAYQVGVLRGIAGLAREYAPGVARTPFDVICGTSAGAINSLGLARGAQDFTLATEALTQLWGTLHADRVYRTD
VGRVGSSGARWLTALAFGWMTGHTPRALFDNTPLRELLESQHDGEQVQAAFDAGALRALAITALSYTTGRHVTFYQSPHV
VLPWRRSQRIAVSDEIGVSHMLASSSIPFVFPAEPVPLEGNDEWFGDGTMRQMSPLSPAIHLGANRILVVGAASRSQPGW
YDTVPASGYPSLAQIAGQALASIFLDGLSADIERLQHVNAMVARNPEIADARDGWRKIEVLVMAPSERIELIASRHVQRL
PGTVRALLKPLGGTEARGAAFASYLLFEPEFTQELIDLGERDVQARRDELAAFLYGAIPDTMRAA

Sequences:

>Translated_385_residues
MMGGGARAAYQVGVLRGIAGLAREYAPGVARTPFDVICGTSAGAINSLGLARGAQDFTLATEALTQLWGTLHADRVYRTD
VGRVGSSGARWLTALAFGWMTGHTPRALFDNTPLRELLESQHDGEQVQAAFDAGALRALAITALSYTTGRHVTFYQSPHV
VLPWRRSQRIAVSDEIGVSHMLASSSIPFVFPAEPVPLEGNDEWFGDGTMRQMSPLSPAIHLGANRILVVGAASRSQPGW
YDTVPASGYPSLAQIAGQALASIFLDGLSADIERLQHVNAMVARNPEIADARDGWRKIEVLVMAPSERIELIASRHVQRL
PGTVRALLKPLGGTEARGAAFASYLLFEPEFTQELIDLGERDVQARRDELAAFLYGAIPDTMRAA
>Mature_385_residues
MMGGGARAAYQVGVLRGIAGLAREYAPGVARTPFDVICGTSAGAINSLGLARGAQDFTLATEALTQLWGTLHADRVYRTD
VGRVGSSGARWLTALAFGWMTGHTPRALFDNTPLRELLESQHDGEQVQAAFDAGALRALAITALSYTTGRHVTFYQSPHV
VLPWRRSQRIAVSDEIGVSHMLASSSIPFVFPAEPVPLEGNDEWFGDGTMRQMSPLSPAIHLGANRILVVGAASRSQPGW
YDTVPASGYPSLAQIAGQALASIFLDGLSADIERLQHVNAMVARNPEIADARDGWRKIEVLVMAPSERIELIASRHVQRL
PGTVRALLKPLGGTEARGAAFASYLLFEPEFTQELIDLGERDVQARRDELAAFLYGAIPDTMRAA

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41442; Mature: 41442

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMGGGARAAYQVGVLRGIAGLAREYAPGVARTPFDVICGTSAGAINSLGLARGAQDFTLA
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCHHHHHHHCCCCHHHHH
TEALTQLWGTLHADRVYRTDVGRVGSSGARWLTALAFGWMTGHTPRALFDNTPLRELLES
HHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHC
QHDGEQVQAAFDAGALRALAITALSYTTGRHVTFYQSPHVVLPWRRSQRIAVSDEIGVSH
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCCCCEEEECCCCHHH
MLASSSIPFVFPAEPVPLEGNDEWFGDGTMRQMSPLSPAIHLGANRILVVGAASRSQPGW
HHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCHHHCCCCEEEEEEECCCCCCCC
YDTVPASGYPSLAQIAGQALASIFLDGLSADIERLQHVNAMVARNPEIADARDGWRKIEV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
LVMAPSERIELIASRHVQRLPGTVRALLKPLGGTEARGAAFASYLLFEPEFTQELIDLGE
EEECCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHEECCHHHHHHHHCCH
RDVQARRDELAAFLYGAIPDTMRAA
HHHHHHHHHHHHHHHHCCCHHHHCC
>Mature Secondary Structure
MMGGGARAAYQVGVLRGIAGLAREYAPGVARTPFDVICGTSAGAINSLGLARGAQDFTLA
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCHHHHHHHCCCCHHHHH
TEALTQLWGTLHADRVYRTDVGRVGSSGARWLTALAFGWMTGHTPRALFDNTPLRELLES
HHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHC
QHDGEQVQAAFDAGALRALAITALSYTTGRHVTFYQSPHVVLPWRRSQRIAVSDEIGVSH
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCCCCEEEECCCCHHH
MLASSSIPFVFPAEPVPLEGNDEWFGDGTMRQMSPLSPAIHLGANRILVVGAASRSQPGW
HHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCHHHCCCCEEEEEEECCCCCCCC
YDTVPASGYPSLAQIAGQALASIFLDGLSADIERLQHVNAMVARNPEIADARDGWRKIEV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
LVMAPSERIELIASRHVQRLPGTVRALLKPLGGTEARGAAFASYLLFEPEFTQELIDLGE
EEECCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHEECCHHHHHHHHCCH
RDVQARRDELAAFLYGAIPDTMRAA
HHHHHHHHHHHHHHHHCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA