| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
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The map label for this gene is ucpA [C]
Identifier: 187927242
GI number: 187927242
Start: 154287
End: 155087
Strand: Reverse
Name: ucpA [C]
Synonym: Rpic_0134
Alternate gene names: 187927242
Gene position: 155087-154287 (Counterclockwise)
Preceding gene: 187927243
Following gene: 187927241
Centisome position: 3.93
GC content: 66.67
Gene sequence:
>801_bases ATGAGCGAGATCGTCTTCATCACCGGCGCTTCCAGCGGCATCGGCCAAGCCTTGGCACGTCAGTACGCAGCGCAGGGCGC CATGATCGGGCTGGTCGCGCGGCGTGTCGACGTGCTCCACGAGTTTGTCCAGACGCTGCCTGCCGGCATCCAGAGCCGCT GCCATTGCTACGCCGCCGACGTGCGCAGCGCCGAATCGATGCGCGACGTGGCCAACGCCTTTATCGCCACGGTCGGGCTG CCCGATGTGGTGATCGCCAACGCCGGCATCTCGGTCGGCACGGACTTGCGCGAACCCGGCGACCTGAAAGCCTTTGCTGT CGTGATGGACACCAACTGGATGGGCGTGCTCAACACGTTCCAGCCGTTTGTCGGGCCGATGCTGGCACGCGCCAAGCCTG GGCAGCCCGGCGGCACGCTTGTCGGCATTGCCAGCGTGGCGGGCGTGCGCGGGCTGCCGGGTGCGGCAGCGTACAGCGCC TCCAAGTCGGCGGTGATCAAGCTGATGGAGAGCCTGCGCGTGGAATTCGGCCCGCTTGGGCTGCGCGTGGTGACGATCGC CCCCGGCTACATCCGCACGCCGATGACCGAACACAATCCTTATCCCATGCCCTTCCTGATGCCGGTGGACCGCTTCGCGC TGAAAGCCGTGAATGCGATCCATCGCGGCGTGCGCTTCACGGTGCTGCCATGGCCGATGGGCATGGTCGCCAAGCTGCTG CACGTGCTGCCGCGCGGGCTGTATGACTTTGCGTTTGCGCGCGCCGGGCGCAAACCCCGCAACCCCGAGATTTCGTCATG A
Upstream 100 bases:
>100_bases TTTCCGGGCATTCGCCCGGGCGTGACACCGCCATCGACGCCCGCCCCTGTGCGGGCGTTTTTTGTGCGTCGGCCTTTTTC ACACCTACCAGGACATCGAC
Downstream 100 bases:
>100_bases CTTACACCGATGCGGCTGGGCTCGCCCACGCCCCTGTCGACACCACACCGCGCATCGCCAGCCTGGTCCCTTCGATTACC GATCTGCTGTTCTCGCTCGA
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 266; Mature: 265
Protein sequence:
>266_residues MSEIVFITGASSGIGQALARQYAAQGAMIGLVARRVDVLHEFVQTLPAGIQSRCHCYAADVRSAESMRDVANAFIATVGL PDVVIANAGISVGTDLREPGDLKAFAVVMDTNWMGVLNTFQPFVGPMLARAKPGQPGGTLVGIASVAGVRGLPGAAAYSA SKSAVIKLMESLRVEFGPLGLRVVTIAPGYIRTPMTEHNPYPMPFLMPVDRFALKAVNAIHRGVRFTVLPWPMGMVAKLL HVLPRGLYDFAFARAGRKPRNPEISS
Sequences:
>Translated_266_residues MSEIVFITGASSGIGQALARQYAAQGAMIGLVARRVDVLHEFVQTLPAGIQSRCHCYAADVRSAESMRDVANAFIATVGL PDVVIANAGISVGTDLREPGDLKAFAVVMDTNWMGVLNTFQPFVGPMLARAKPGQPGGTLVGIASVAGVRGLPGAAAYSA SKSAVIKLMESLRVEFGPLGLRVVTIAPGYIRTPMTEHNPYPMPFLMPVDRFALKAVNAIHRGVRFTVLPWPMGMVAKLL HVLPRGLYDFAFARAGRKPRNPEISS >Mature_265_residues SEIVFITGASSGIGQALARQYAAQGAMIGLVARRVDVLHEFVQTLPAGIQSRCHCYAADVRSAESMRDVANAFIATVGLP DVVIANAGISVGTDLREPGDLKAFAVVMDTNWMGVLNTFQPFVGPMLARAKPGQPGGTLVGIASVAGVRGLPGAAAYSAS KSAVIKLMESLRVEFGPLGLRVVTIAPGYIRTPMTEHNPYPMPFLMPVDRFALKAVNAIHRGVRFTVLPWPMGMVAKLLH VLPRGLYDFAFARAGRKPRNPEISS
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40807363, Length=251, Percent_Identity=31.8725099601594, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI20149619, Length=199, Percent_Identity=29.6482412060301, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI4758504, Length=204, Percent_Identity=31.8627450980392, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI150247226, Length=213, Percent_Identity=31.4553990610329, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI31543615, Length=234, Percent_Identity=27.3504273504274, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI4503817, Length=200, Percent_Identity=30, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI40254992, Length=238, Percent_Identity=23.9495798319328, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI83715985, Length=209, Percent_Identity=28.7081339712919, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI87082100, Length=194, Percent_Identity=34.5360824742268, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1787820, Length=188, Percent_Identity=25, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787335, Length=195, Percent_Identity=29.2307692307692, Blast_Score=67, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17567345, Length=212, Percent_Identity=30.188679245283, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17508895, Length=249, Percent_Identity=27.3092369477912, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI193203117, Length=211, Percent_Identity=29.3838862559242, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193203115, Length=211, Percent_Identity=29.3838862559242, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI25147288, Length=197, Percent_Identity=27.4111675126904, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17562908, Length=201, Percent_Identity=27.8606965174129, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI71997402, Length=195, Percent_Identity=28.2051282051282, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17555706, Length=202, Percent_Identity=30.6930693069307, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17564282, Length=248, Percent_Identity=28.6290322580645, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17562904, Length=210, Percent_Identity=27.6190476190476, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17562906, Length=201, Percent_Identity=27.363184079602, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17570069, Length=196, Percent_Identity=29.0816326530612, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17559104, Length=197, Percent_Identity=26.3959390862944, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17560150, Length=195, Percent_Identity=29.2307692307692, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17538182, Length=208, Percent_Identity=29.8076923076923, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17562990, Length=194, Percent_Identity=28.3505154639175, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71994604, Length=194, Percent_Identity=28.3505154639175, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17507613, Length=198, Percent_Identity=29.7979797979798, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI32563809, Length=198, Percent_Identity=29.7979797979798, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17560220, Length=210, Percent_Identity=27.1428571428571, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=199, Percent_Identity=31.6582914572864, Blast_Score=86, Evalue=5e-18, Organism=Saccharomyces cerevisiae, GI6322067, Length=244, Percent_Identity=26.2295081967213, Blast_Score=64, Evalue=4e-11, Organism=Drosophila melanogaster, GI21357041, Length=195, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI24643142, Length=217, Percent_Identity=31.3364055299539, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24648693, Length=219, Percent_Identity=31.9634703196347, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI21355889, Length=219, Percent_Identity=31.9634703196347, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI23397609, Length=195, Percent_Identity=32.8205128205128, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI24641388, Length=205, Percent_Identity=33.6585365853659, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI28571526, Length=194, Percent_Identity=31.9587628865979, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI24639444, Length=195, Percent_Identity=33.8461538461538, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI24644339, Length=193, Percent_Identity=30.5699481865285, Blast_Score=85, Evalue=6e-17, Organism=Drosophila melanogaster, GI116007236, Length=216, Percent_Identity=31.0185185185185, Blast_Score=82, Evalue=2e-16, Organism=Drosophila melanogaster, GI21358495, Length=200, Percent_Identity=32, Blast_Score=82, Evalue=2e-16, Organism=Drosophila melanogaster, GI28571387, Length=205, Percent_Identity=34.1463414634146, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24641232, Length=204, Percent_Identity=30.3921568627451, Blast_Score=77, Evalue=8e-15, Organism=Drosophila melanogaster, GI281364494, Length=200, Percent_Identity=31, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI116007238, Length=203, Percent_Identity=31.0344827586207, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI24663911, Length=204, Percent_Identity=29.9019607843137, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24649181, Length=194, Percent_Identity=26.2886597938144, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI17737361, Length=201, Percent_Identity=30.8457711442786, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI281364892, Length=212, Percent_Identity=27.8301886792453, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI116007234, Length=218, Percent_Identity=27.5229357798165, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 28326; Mature: 28194
Theoretical pI: Translated: 10.39; Mature: 10.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEIVFITGASSGIGQALARQYAAQGAMIGLVARRVDVLHEFVQTLPAGIQSRCHCYAAD CCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VRSAESMRDVANAFIATVGLPDVVIANAGISVGTDLREPGDLKAFAVVMDTNWMGVLNTF HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHH QPFVGPMLARAKPGQPGGTLVGIASVAGVRGLPGAAAYSASKSAVIKLMESLRVEFGPLG HHHHHHHHHCCCCCCCCCCEEEHHHHHCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCCCC LRVVTIAPGYIRTPMTEHNPYPMPFLMPVDRFALKAVNAIHRGVRFTVLPWPMGMVAKLL EEEEEECCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHH HVLPRGLYDFAFARAGRKPRNPEISS HHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure SEIVFITGASSGIGQALARQYAAQGAMIGLVARRVDVLHEFVQTLPAGIQSRCHCYAAD CCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VRSAESMRDVANAFIATVGLPDVVIANAGISVGTDLREPGDLKAFAVVMDTNWMGVLNTF HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHH QPFVGPMLARAKPGQPGGTLVGIASVAGVRGLPGAAAYSASKSAVIKLMESLRVEFGPLG HHHHHHHHHCCCCCCCCCCEEEHHHHHCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCCCC LRVVTIAPGYIRTPMTEHNPYPMPFLMPVDRFALKAVNAIHRGVRFTVLPWPMGMVAKLL EEEEEECCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHH HVLPRGLYDFAFARAGRKPRNPEISS HHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1730672 [H]