Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
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Accession | NC_010682 |
Length | 3,942,557 |
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The map label for this gene is 187927241
Identifier: 187927241
GI number: 187927241
Start: 153445
End: 154290
Strand: Reverse
Name: 187927241
Synonym: Rpic_0133
Alternate gene names: NA
Gene position: 154290-153445 (Counterclockwise)
Preceding gene: 187927242
Following gene: 187927238
Centisome position: 3.91
GC content: 62.88
Gene sequence:
>846_bases ATGACTTACACCGATGCGGCTGGGCTCGCCCACGCCCCTGTCGACACCACACCGCGCATCGCCAGCCTGGTCCCTTCGAT TACCGATCTGCTGTTCTCGCTCGACCTGGGCGATCAGCTTGTGGCCCGCACCGGCTTCTGCATCCACCCGCGCGAAGCGG TGCGCAACGTACCGAAGGTCGGTGGCACCAAGACCGTCAAACTGGACAAGTTGCGCGAGCTGGCGCCCACGCACGTCATC GTGAACATTGACGAGAACACGCGTCCGACCGTCGACAAGCTGCGCGAGTTCATCCCGCACATCATCGTCACGCATCCTTG CTCGCCGGAAGACAACCTCGCGCTATACGAACTGCTGGGCGGTATCTTTCGCCGCGAAGCGCAGGCGCAGAAGTTGTCGG ATGCGCTGACGCAGGAGCTGGAGGCGCTGCGCGGTCGCCACTTCCTGCCGCACCGCGTGCTGTACGCCATCTGGCAAGAC CCGTGGATGACCGTGTCGCGCGACACGTACATCTCGCGGATGCTCAAACTCGTCAACTGCCATACGTGGCCCGACGATCC GGCGCCTGTGGAATGCGGCACCAACAAGAGCGGCGATTGTGCCCGCCCCAACCGGCCCGACACGCGCTACCCGACGTTCC GCTGGAGCAATGATGTTGTGCGCAACATCGACTGCGTGCTGCTCTCCACCGAGCCTTACAGCTTTACCGAAGAGCACGTC GATGCGCTCGAAAAGCAGATCGGCAAGCCGGTCTACCTCGTTGATGGCGAGATGGTGTCGTGGTACGGCAGCCGCGCGAT TGATGGCGTGCGGTATCTGGGGCAATTTGCGAAGACGCTGCGTTAG
Upstream 100 bases:
>100_bases TGGGCATGGTCGCCAAGCTGCTGCACGTGCTGCCGCGCGGGCTGTATGACTTTGCGTTTGCGCGCGCCGGGCGCAAACCC CGCAACCCCGAGATTTCGTC
Downstream 100 bases:
>100_bases GGCCAAGTTTCAGGCCGAAAAAAAACCCGCCGGTCGGCGGGTTTCTTGTTGGCCGCAGCGATACGTTATCGCTCGAACCC ATAGTCGTACTCGACCTTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MTYTDAAGLAHAPVDTTPRIASLVPSITDLLFSLDLGDQLVARTGFCIHPREAVRNVPKVGGTKTVKLDKLRELAPTHVI VNIDENTRPTVDKLREFIPHIIVTHPCSPEDNLALYELLGGIFRREAQAQKLSDALTQELEALRGRHFLPHRVLYAIWQD PWMTVSRDTYISRMLKLVNCHTWPDDPAPVECGTNKSGDCARPNRPDTRYPTFRWSNDVVRNIDCVLLSTEPYSFTEEHV DALEKQIGKPVYLVDGEMVSWYGSRAIDGVRYLGQFAKTLR
Sequences:
>Translated_281_residues MTYTDAAGLAHAPVDTTPRIASLVPSITDLLFSLDLGDQLVARTGFCIHPREAVRNVPKVGGTKTVKLDKLRELAPTHVI VNIDENTRPTVDKLREFIPHIIVTHPCSPEDNLALYELLGGIFRREAQAQKLSDALTQELEALRGRHFLPHRVLYAIWQD PWMTVSRDTYISRMLKLVNCHTWPDDPAPVECGTNKSGDCARPNRPDTRYPTFRWSNDVVRNIDCVLLSTEPYSFTEEHV DALEKQIGKPVYLVDGEMVSWYGSRAIDGVRYLGQFAKTLR >Mature_280_residues TYTDAAGLAHAPVDTTPRIASLVPSITDLLFSLDLGDQLVARTGFCIHPREAVRNVPKVGGTKTVKLDKLRELAPTHVIV NIDENTRPTVDKLREFIPHIIVTHPCSPEDNLALYELLGGIFRREAQAQKLSDALTQELEALRGRHFLPHRVLYAIWQDP WMTVSRDTYISRMLKLVNCHTWPDDPAPVECGTNKSGDCARPNRPDTRYPTFRWSNDVVRNIDCVLLSTEPYSFTEEHVD ALEKQIGKPVYLVDGEMVSWYGSRAIDGVRYLGQFAKTLR
Specific function: Unknown
COG id: COG0614
COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31748; Mature: 31616
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: PS50983 FE_B12_PBP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYTDAAGLAHAPVDTTPRIASLVPSITDLLFSLDLGDQLVARTGFCIHPREAVRNVPKV CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEECCHHHHHCCCCC GGTKTVKLDKLRELAPTHVIVNIDENTRPTVDKLREFIPHIIVTHPCSPEDNLALYELLG CCCCEEEHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHEEEECCCCCCCCCHHHHHHH GIFRREAQAQKLSDALTQELEALRGRHFLPHRVLYAIWQDPWMTVSRDTYISRMLKLVNC HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHC HTWPDDPAPVECGTNKSGDCARPNRPDTRYPTFRWSNDVVRNIDCVLLSTEPYSFTEEHV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHCCCEEEEECCCCCCHHHHHH DALEKQIGKPVYLVDGEMVSWYGSRAIDGVRYLGQFAKTLR HHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TYTDAAGLAHAPVDTTPRIASLVPSITDLLFSLDLGDQLVARTGFCIHPREAVRNVPKV CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEECCHHHHHCCCCC GGTKTVKLDKLRELAPTHVIVNIDENTRPTVDKLREFIPHIIVTHPCSPEDNLALYELLG CCCCEEEHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHEEEECCCCCCCCCHHHHHHH GIFRREAQAQKLSDALTQELEALRGRHFLPHRVLYAIWQDPWMTVSRDTYISRMLKLVNC HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHC HTWPDDPAPVECGTNKSGDCARPNRPDTRYPTFRWSNDVVRNIDCVLLSTEPYSFTEEHV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHCCCEEEEECCCCCCHHHHHH DALEKQIGKPVYLVDGEMVSWYGSRAIDGVRYLGQFAKTLR HHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA