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The map label for this gene is fecI [C]

Identifier: 187927138

GI number: 187927138

Start: 39715

End: 40623

Strand: Reverse

Name: fecI [C]

Synonym: Rpic_0028

Alternate gene names: 187927138

Gene position: 40623-39715 (Counterclockwise)

Preceding gene: 187927139

Following gene: 187927137

Centisome position: 1.03

GC content: 67.11

Gene sequence:

>909_bases
ATGACCAAGCCCAGCCCCGACCGCACCACCCGCACCGACAGCGAAGACACGACCTTCACCGCCGTCCGGCCCCGCCTCTT
TGCGATTGCCTATCGCATGCTCGGCAGCCGCGCTGACGCTGAAGACGTGCTGCAAGACGCCTGGATGCGCTGGCACCAAA
CCGACCAGACCGCGCTGCAATCGGCCGAGGCATGGCTCGTGACGGTGGTCACTCGCCTGTCGATCGACCGCCTGCGCGCC
GCCAAGACCGAGCGCGAAGCCTACGTCGGCTGGTGGCTGCCCGAGCCGCTGGTTGAACCCGAAAGCCACGCCCCCACGCC
CGAAACCGCCGTGGAACTGGCAGGCGATGTGTCGATGGCCCTGCTGTGGGTGCTCGAGCGCCTGTCGCCCGAAGAGCGCG
CGGCGTTTCTGATGCGCCAGGTATTCGATCAGGATTACTCGGAGATCGCCGCCCTGCTGGGCAAGACCGAAGCCGCGTGC
CGGCAGATGGTGCACCGCGCATCAGACCGGGTGCAGCAGGAGCGCCCGCGCTTCGATGTCGCGCCCGATGCGCATCGGGA
CTTGCTCGAGCGCTTTGCGCAAGCCTCACGCACGGGCCAACGCGATGCCATCCGCGCGCTGCTGGCAGATGACGCGCAAC
TCGTGGGCGACGGCGGCGGCAAGGTGCCGTCGTTCACGCGCATCATTCAAGACGCCGGTCAGATCACCAAGATCTACTGC
GAGCTGGTGCGCGCCATGGGCGACGTCCGCTACGTACACGCCCGCGTGAACGGCGAGCCCGGCCTGCTGCGCTACGTGGA
TGGCAAGCTGGAATCGGCGCAGTCGTTCGTCATCGAGAACGGCCAGATCGTGGCCATCTACGTGGTGCGCAATCCGGACA
AGCTGGCGCACATCGGCATCGGCGCATAA

Upstream 100 bases:

>100_bases
ATACGCAGAATGTGACGAACGCCGCATAACCGAAGCACCCGGTCACAAACGATCTCGCCCGCCCGTCTAGGGAGCATCAT
CCCCGGACGACACGCCCGCC

Downstream 100 bases:

>100_bases
AAAAACAAAGTTTTCTTGCGGGGCTGTCACAACGCAGCCGCGCTAGGCGTCTTCAGGGTATGGAGCGACGCAAGGTACCC
ACCTGCCGCCTGCATCGGCT

Product: ECF subfamily RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor SigJ; Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; Sigma-; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF-Sigma Factor; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor; Sigma-70 Region 2 Domain-Containing Protein; Sigma Factor Sigma; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma Factor Sigma-70 Family Protein; RNA Polymerase; RNA Polymerase ECF-Type Sigma Factor; ECF Sigma Factor; AlteRNAtive RNA Polymerase Sigma Factor SigJ; Sigma-70 Family RNA Polymerase Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Factor Protein; ECF-Family Protein RNA Polymerase Sigma Factor; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor Family; Sigma Factor Protein; RNA Polymerase Sigma-70-Like Factor; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; ECF Subfamily RNA Polymerase Sigma-; RNA Polymerase Sigma-70 Factor Protein; Sigma-70 Factor

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MTKPSPDRTTRTDSEDTTFTAVRPRLFAIAYRMLGSRADAEDVLQDAWMRWHQTDQTALQSAEAWLVTVVTRLSIDRLRA
AKTEREAYVGWWLPEPLVEPESHAPTPETAVELAGDVSMALLWVLERLSPEERAAFLMRQVFDQDYSEIAALLGKTEAAC
RQMVHRASDRVQQERPRFDVAPDAHRDLLERFAQASRTGQRDAIRALLADDAQLVGDGGGKVPSFTRIIQDAGQITKIYC
ELVRAMGDVRYVHARVNGEPGLLRYVDGKLESAQSFVIENGQIVAIYVVRNPDKLAHIGIGA

Sequences:

>Translated_302_residues
MTKPSPDRTTRTDSEDTTFTAVRPRLFAIAYRMLGSRADAEDVLQDAWMRWHQTDQTALQSAEAWLVTVVTRLSIDRLRA
AKTEREAYVGWWLPEPLVEPESHAPTPETAVELAGDVSMALLWVLERLSPEERAAFLMRQVFDQDYSEIAALLGKTEAAC
RQMVHRASDRVQQERPRFDVAPDAHRDLLERFAQASRTGQRDAIRALLADDAQLVGDGGGKVPSFTRIIQDAGQITKIYC
ELVRAMGDVRYVHARVNGEPGLLRYVDGKLESAQSFVIENGQIVAIYVVRNPDKLAHIGIGA
>Mature_301_residues
TKPSPDRTTRTDSEDTTFTAVRPRLFAIAYRMLGSRADAEDVLQDAWMRWHQTDQTALQSAEAWLVTVVTRLSIDRLRAA
KTEREAYVGWWLPEPLVEPESHAPTPETAVELAGDVSMALLWVLERLSPEERAAFLMRQVFDQDYSEIAALLGKTEAACR
QMVHRASDRVQQERPRFDVAPDAHRDLLERFAQASRTGQRDAIRALLADDAQLVGDGGGKVPSFTRIIQDAGQITKIYCE
LVRAMGDVRYVHARVNGEPGLLRYVDGKLESAQSFVIENGQIVAIYVVRNPDKLAHIGIGA

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33811; Mature: 33679

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKPSPDRTTRTDSEDTTFTAVRPRLFAIAYRMLGSRADAEDVLQDAWMRWHQTDQTALQ
CCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHH
SAEAWLVTVVTRLSIDRLRAAKTEREAYVGWWLPEPLVEPESHAPTPETAVELAGDVSMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
LLWVLERLSPEERAAFLMRQVFDQDYSEIAALLGKTEAACRQMVHRASDRVQQERPRFDV
HHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC
APDAHRDLLERFAQASRTGQRDAIRALLADDAQLVGDGGGKVPSFTRIIQDAGQITKIYC
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHEECCCCCCCHHHHHHHHHHHHHHHHHH
ELVRAMGDVRYVHARVNGEPGLLRYVDGKLESAQSFVIENGQIVAIYVVRNPDKLAHIGI
HHHHHHCCCEEEEEEECCCCCEEEECCCHHHHHHHHEECCCCEEEEEEEECCCCEEECCC
GA
CC
>Mature Secondary Structure 
TKPSPDRTTRTDSEDTTFTAVRPRLFAIAYRMLGSRADAEDVLQDAWMRWHQTDQTALQ
CCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHH
SAEAWLVTVVTRLSIDRLRAAKTEREAYVGWWLPEPLVEPESHAPTPETAVELAGDVSMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
LLWVLERLSPEERAAFLMRQVFDQDYSEIAALLGKTEAACRQMVHRASDRVQQERPRFDV
HHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC
APDAHRDLLERFAQASRTGQRDAIRALLADDAQLVGDGGGKVPSFTRIIQDAGQITKIYC
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHEECCCCCCCHHHHHHHHHHHHHHHHHH
ELVRAMGDVRYVHARVNGEPGLLRYVDGKLESAQSFVIENGQIVAIYVVRNPDKLAHIGI
HHHHHHCCCEEEEEEECCCCCEEEECCCHHHHHHHHEECCCCEEEEEEEECCCCEEECCC
GA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA