Click here to switch to the map view.

The map label for this gene is 187927121

Identifier: 187927121

GI number: 187927121

Start: 11817

End: 12146

Strand: Reverse

Name: 187927121

Synonym: Rpic_0009

Alternate gene names: NA

Gene position: 12146-11817 (Counterclockwise)

Preceding gene: 187927123

Following gene: 187927120

Centisome position: 0.31

GC content: 65.15

Gene sequence:

>330_bases
ATGAGCAAGAACAACGCAAACAAGTTTTCCCCGGAAGTGCGCGAGCGCGCCGTGCGCCTGGTGCAGGAGTCGCGCGGCGA
GTACCCGTCGCTGTGGGTGGCGGTCGAGTCCATCGCGCCCAAGATCGGCTGCTCGGCGCAGACGCTGCTGACCTGGGTCA
AGCGCCACGAAGTCGACAGCGGACAGCGCGAAGGCGTCACCACCAGCGAGCGAGAACGCATCAAGGAGTTGGAGCGGGAG
AACCGAGAGCTGCGCCGCGCCAACGACATCCTGCGCACTGCCAGCGCTTTTTTCGCGCAGGCGGAGCTCGACCGCAAGCT
GAAGTCGTAA

Upstream 100 bases:

>100_bases
CCCCGAATACAAGAACCGGATGATCTTCGACCGGTTTCGGGAAACTGTGTGAATCGCCCCGGGTTTTGCGGAGGCTCTCA
CTCTTGAGAGAATGCGAGCC

Downstream 100 bases:

>100_bases
ACACCTACATCGACCGGCACCGGGAGGTTTACGGGGTCGAGCCGATCTGCAAGGTGTTGCAGGTTGCCTCGTCGGCCTAT
CGGCGCCATGCCGCACGGCT

Product: transposase IS3/IS911 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MSKNNANKFSPEVRERAVRLVQESRGEYPSLWVAVESIAPKIGCSAQTLLTWVKRHEVDSGQREGVTTSERERIKELERE
NRELRRANDILRTASAFFAQAELDRKLKS

Sequences:

>Translated_109_residues
MSKNNANKFSPEVRERAVRLVQESRGEYPSLWVAVESIAPKIGCSAQTLLTWVKRHEVDSGQREGVTTSERERIKELERE
NRELRRANDILRTASAFFAQAELDRKLKS
>Mature_108_residues
SKNNANKFSPEVRERAVRLVQESRGEYPSLWVAVESIAPKIGCSAQTLLTWVKRHEVDSGQREGVTTSERERIKELEREN
RELRRANDILRTASAFFAQAELDRKLKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 8 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002514 [H]

Pfam domain/function: PF01527 Transposase_8 [H]

EC number: NA

Molecular weight: Translated: 12557; Mature: 12426

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNNANKFSPEVRERAVRLVQESRGEYPSLWVAVESIAPKIGCSAQTLLTWVKRHEVDS
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
GQREGVTTSERERIKELERENRELRRANDILRTASAFFAQAELDRKLKS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKNNANKFSPEVRERAVRLVQESRGEYPSLWVAVESIAPKIGCSAQTLLTWVKRHEVDS
CCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
GQREGVTTSERERIKELERENRELRRANDILRTASAFFAQAELDRKLKS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7518087 [H]