| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is lytA [H]
Identifier: 187935630
GI number: 187935630
Start: 2706239
End: 2708005
Strand: Reverse
Name: lytA [H]
Synonym: CLL_A2594
Alternate gene names: 187935630
Gene position: 2708005-2706239 (Counterclockwise)
Preceding gene: 187932677
Following gene: 187934867
Centisome position: 71.26
GC content: 30.22
Gene sequence:
>1767_bases ATGAAAAGAAATATGCATGCAAAAACTATAGCCTTAGTTCTTGCGGCTATAACGACAATGCAAGCAGGAGGAATTGTACC AAATTTTGAAGGTAACAATATTAAGGCTTATGCTGATACTATTGTAAAGGAAGAGAAGCAATCTATAGAAACAACTAAAA GTAAAGATACTTATAAGGCAATGGGGATAGATGTAAATACAACAACAGCAGGAAGTATAACTGTTACTTTACCTAGCAAG TTTACTAATTCATTAGATAGCTTAGATTCAAAAGATAATACAGCTTATATAGCAGTTAAATTTACTACTCCATCAGGAAT AAATGCGTCAAAAATAAAAGATTTATCTTCAAGTAAGGAATATGTATTATCATCTAATTCAAATGAAGTAAAAGATGGAT GTTATATTAAATATATACCTATAGCAACTAAAAATGGAGCTGAATGGGAGCCAATAGTAAATACTTATAAAAATGACTCA TATAAATATGAATGGTTTAATGAAAATGGAGTTGCAATTAAAACATCATTAAACACAACAGTTCAAAGAGAAAAATATGC TACAGTATCAATTTCAGGTACTGAGAAGGTAGGCAAGACGTTAGAAGCTAATGTAACAGCTTATAAAAATGGAGTACAAG TGACTAATCTAGGAAATGTAGAGTATCAATGGTATAGATCTAAATATAGAGATAAAGATTTTGATAGCTTGTCTGGTGAG CATAGTAGAGACTATAAATTAGCTAATAGAGATGAAGACAAATATATCAAAGTAGTAGCAAAAGTCACTATAGATGGAGA AACAGTAGTTGCAGAAGATAGAACTAGTAGCATTGATGAAAAAAAATCTTCTAGATCTCATAGTTCATCAAGTAAAGGAT CAGGAAGTACAGCTGATACTGATAGAATAAATGATAAGATTGAAGATTCAAAAGCTGATAGTGTATCTTACAATGTTTCT AATTATCCTAAGGTAGAAAAAGATGTTTTTGAATGTTTAAAGGATAATGATGATAAAACATTAGTGCTTGAAGGTGATGA TTATAGTTGGACTTTTGATGGAGATGATATTAAGAATGTTTCATCAATGGATAGCAAATTAGATACAACTATCGAAACAA CATCTCCTAATGAATCAGAAATAAAAAATATTTTAAATGGTGCAAATGTAGTTAATTTATATTTTAGTTATGATGGTAAA TTACCTGGTAAGGCAAAAATTGAAGCTAAAATAGGATCAAAATATAATGGAAAGAATATGTACGTTTATTACTATAATAA AAGCACAAAATCATTAGAATTAGTTGCATCAAATGTTAAGGTAAAAGATGATAATATATCATTTACAATAACTCATTGTT CAGATTATGTATTAAGTGAAACACCACTTTCAGCTGCAGTAGGCTTTAAAGAAGGTTGGAACATACTTAACGGTGGTAAT TGGCAGTATGTTTTAGGTGGAAATAGGGTTACTGGATGGAACTTTATTAATGGAAGATGGTATTGGATGGATTCATTTGG AATGATGCAAAAAGGATGGGTTAATCCAAATGGTTCATGGTATTACTTAAATTATAATGGTGATATGGCAACAGGATGGC AAAATATAAATGGAAAATGGTATTACTTAAGAGAAGATGGAAAAATGTTAACTGGATGGGTAGATGATAGAGGTACATGG TATTACCTAGATTATTCAGGAGCAATGGTTAGTAATACAACTGTTAATGGCTATAGACTAGGTTCTAATGGAGCTTGGAT AAGATAA
Upstream 100 bases:
>100_bases TAGAATTAAACTATTAAGTATTATTAAACTTATTATTTTGATTTATACATATACAAAAAAATTACACTTTAGGGGTAAGA AAAGACAAGGGGAGATATTA
Downstream 100 bases:
>100_bases ATTAAATAATAAGAACAAACTAACAAGAAAATTAATACTATATTTTATAAATACAAATAAAAAGCCCAAAGGATAAAATG AATTTTAAATAAATTTTATC
Product: hypothetical protein
Products: NA
Alternate protein names: Cell wall hydrolase; Mucopeptide aminohydrolase; Murein hydrolase; N-acetylmuramoyl-L-alanine amidase [H]
Number of amino acids: Translated: 588; Mature: 588
Protein sequence:
>588_residues MKRNMHAKTIALVLAAITTMQAGGIVPNFEGNNIKAYADTIVKEEKQSIETTKSKDTYKAMGIDVNTTTAGSITVTLPSK FTNSLDSLDSKDNTAYIAVKFTTPSGINASKIKDLSSSKEYVLSSNSNEVKDGCYIKYIPIATKNGAEWEPIVNTYKNDS YKYEWFNENGVAIKTSLNTTVQREKYATVSISGTEKVGKTLEANVTAYKNGVQVTNLGNVEYQWYRSKYRDKDFDSLSGE HSRDYKLANRDEDKYIKVVAKVTIDGETVVAEDRTSSIDEKKSSRSHSSSSKGSGSTADTDRINDKIEDSKADSVSYNVS NYPKVEKDVFECLKDNDDKTLVLEGDDYSWTFDGDDIKNVSSMDSKLDTTIETTSPNESEIKNILNGANVVNLYFSYDGK LPGKAKIEAKIGSKYNGKNMYVYYYNKSTKSLELVASNVKVKDDNISFTITHCSDYVLSETPLSAAVGFKEGWNILNGGN WQYVLGGNRVTGWNFINGRWYWMDSFGMMQKGWVNPNGSWYYLNYNGDMATGWQNINGKWYYLREDGKMLTGWVDDRGTW YYLDYSGAMVSNTTVNGYRLGSNGAWIR
Sequences:
>Translated_588_residues MKRNMHAKTIALVLAAITTMQAGGIVPNFEGNNIKAYADTIVKEEKQSIETTKSKDTYKAMGIDVNTTTAGSITVTLPSK FTNSLDSLDSKDNTAYIAVKFTTPSGINASKIKDLSSSKEYVLSSNSNEVKDGCYIKYIPIATKNGAEWEPIVNTYKNDS YKYEWFNENGVAIKTSLNTTVQREKYATVSISGTEKVGKTLEANVTAYKNGVQVTNLGNVEYQWYRSKYRDKDFDSLSGE HSRDYKLANRDEDKYIKVVAKVTIDGETVVAEDRTSSIDEKKSSRSHSSSSKGSGSTADTDRINDKIEDSKADSVSYNVS NYPKVEKDVFECLKDNDDKTLVLEGDDYSWTFDGDDIKNVSSMDSKLDTTIETTSPNESEIKNILNGANVVNLYFSYDGK LPGKAKIEAKIGSKYNGKNMYVYYYNKSTKSLELVASNVKVKDDNISFTITHCSDYVLSETPLSAAVGFKEGWNILNGGN WQYVLGGNRVTGWNFINGRWYWMDSFGMMQKGWVNPNGSWYYLNYNGDMATGWQNINGKWYYLREDGKMLTGWVDDRGTW YYLDYSGAMVSNTTVNGYRLGSNGAWIR >Mature_588_residues MKRNMHAKTIALVLAAITTMQAGGIVPNFEGNNIKAYADTIVKEEKQSIETTKSKDTYKAMGIDVNTTTAGSITVTLPSK FTNSLDSLDSKDNTAYIAVKFTTPSGINASKIKDLSSSKEYVLSSNSNEVKDGCYIKYIPIATKNGAEWEPIVNTYKNDS YKYEWFNENGVAIKTSLNTTVQREKYATVSISGTEKVGKTLEANVTAYKNGVQVTNLGNVEYQWYRSKYRDKDFDSLSGE HSRDYKLANRDEDKYIKVVAKVTIDGETVVAEDRTSSIDEKKSSRSHSSSSKGSGSTADTDRINDKIEDSKADSVSYNVS NYPKVEKDVFECLKDNDDKTLVLEGDDYSWTFDGDDIKNVSSMDSKLDTTIETTSPNESEIKNILNGANVVNLYFSYDGK LPGKAKIEAKIGSKYNGKNMYVYYYNKSTKSLELVASNVKVKDDNISFTITHCSDYVLSETPLSAAVGFKEGWNILNGGN WQYVLGGNRVTGWNFINGRWYWMDSFGMMQKGWVNPNGSWYYLNYNGDMATGWQNINGKWYYLREDGKMLTGWVDDRGTW YYLDYSGAMVSNTTVNGYRLGSNGAWIR
Specific function: Autolysins are involved in some important biological processes such as cell separation, cell-wall turnover, competence for genetic transformation, formation of the flagella and sporulation. Autolysin strictly depends on the presence of choline-containing
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 6 cell wall-binding repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002502 - InterPro: IPR018337 [H]
Pfam domain/function: PF01510 Amidase_2; PF01473 CW_binding_1 [H]
EC number: =3.5.1.28 [H]
Molecular weight: Translated: 65849; Mature: 65849
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRNMHAKTIALVLAAITTMQAGGIVPNFEGNNIKAYADTIVKEEKQSIETTKSKDTYKA CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEE MGIDVNTTTAGSITVTLPSKFTNSLDSLDSKDNTAYIAVKFTTPSGINASKIKDLSSSKE EEEEEECCCCCEEEEEECHHHHHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHCCCCCC YVLSSNSNEVKDGCYIKYIPIATKNGAEWEPIVNTYKNDSYKYEWFNENGVAIKTSLNTT EEEECCCCCCCCCEEEEEEEEEECCCCCCCHHHHHCCCCCEEEEEECCCCEEEEEECCCE VQREKYATVSISGTEKVGKTLEANVTAYKNGVQVTNLGNVEYQWYRSKYRDKDFDSLSGE EECCEEEEEEECCHHHHCCEEECCEEEECCCEEEEECCCEEEEEHHHHCCCCCCHHCCCC HSRDYKLANRDEDKYIKVVAKVTIDGETVVAEDRTSSIDEKKSSRSHSSSSKGSGSTADT CCCCCCCCCCCCCCEEEEEEEEEECCCEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCH DRINDKIEDSKADSVSYNVSNYPKVEKDVFECLKDNDDKTLVLEGDDYSWTFDGDDIKNV HHCCCHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCCH SSMDSKLDTTIETTSPNESEIKNILNGANVVNLYFSYDGKLPGKAKIEAKIGSKYNGKNM HHHCCCCCCEEEECCCCHHHHHHHHCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCEE YVYYYNKSTKSLELVASNVKVKDDNISFTITHCSDYVLSETPLSAAVGFKEGWNILNGGN EEEEECCCCCEEEEEEECCEEECCCEEEEEEECCCEEECCCCCHHHCCHHHCCCEECCCC WQYVLGGNRVTGWNFINGRWYWMDSFGMMQKGWVNPNGSWYYLNYNGDMATGWQNINGKW EEEEECCCEEECEEEECCEEEEEECCCCCCCCEECCCCCEEEEEECCCEECCEECCCCEE YYLREDGKMLTGWVDDRGTWYYLDYSGAMVSNTTVNGYRLGSNGAWIR EEEECCCCEEEEEECCCCEEEEEEECCCEEECCEECCEEECCCCCCCC >Mature Secondary Structure MKRNMHAKTIALVLAAITTMQAGGIVPNFEGNNIKAYADTIVKEEKQSIETTKSKDTYKA CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEE MGIDVNTTTAGSITVTLPSKFTNSLDSLDSKDNTAYIAVKFTTPSGINASKIKDLSSSKE EEEEEECCCCCEEEEEECHHHHHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHCCCCCC YVLSSNSNEVKDGCYIKYIPIATKNGAEWEPIVNTYKNDSYKYEWFNENGVAIKTSLNTT EEEECCCCCCCCCEEEEEEEEEECCCCCCCHHHHHCCCCCEEEEEECCCCEEEEEECCCE VQREKYATVSISGTEKVGKTLEANVTAYKNGVQVTNLGNVEYQWYRSKYRDKDFDSLSGE EECCEEEEEEECCHHHHCCEEECCEEEECCCEEEEECCCEEEEEHHHHCCCCCCHHCCCC HSRDYKLANRDEDKYIKVVAKVTIDGETVVAEDRTSSIDEKKSSRSHSSSSKGSGSTADT CCCCCCCCCCCCCCEEEEEEEEEECCCEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCH DRINDKIEDSKADSVSYNVSNYPKVEKDVFECLKDNDDKTLVLEGDDYSWTFDGDDIKNV HHCCCHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCCH SSMDSKLDTTIETTSPNESEIKNILNGANVVNLYFSYDGKLPGKAKIEAKIGSKYNGKNM HHHCCCCCCEEEECCCCHHHHHHHHCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCEE YVYYYNKSTKSLELVASNVKVKDDNISFTITHCSDYVLSETPLSAAVGFKEGWNILNGGN EEEEECCCCCEEEEEEECCEEECCCEEEEEEECCCEEECCCCCHHHCCHHHCCCEECCCC WQYVLGGNRVTGWNFINGRWYWMDSFGMMQKGWVNPNGSWYYLNYNGDMATGWQNINGKW EEEEECCCEEECEEEECCEEEEEECCCCCCCCEECCCCCEEEEEECCCEECCEECCCCEE YYLREDGKMLTGWVDDRGTWYYLDYSGAMVSNTTVNGYRLGSNGAWIR EEEECCCCEEEEEECCCCEEEEEEECCCEEECCEECCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2875013; 11463916 [H]