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The map label for this gene is whiA

Identifier: 187935284

GI number: 187935284

Start: 3517292

End: 3518239

Strand: Reverse

Name: whiA

Synonym: CLL_A3340

Alternate gene names: 187935284

Gene position: 3518239-3517292 (Counterclockwise)

Preceding gene: 187933632

Following gene: 187932519

Centisome position: 92.58

GC content: 29.64

Gene sequence:

>948_bases
ATGTCATTTTCATCTAAAGTTAAAGGCGAAATATGTAGATATGTGGATATGTGCAAAGAAGATGCATTAGCAGAAATATC
TGCAATAATGAAAGTGAGTGGAACCATAGCTTTTAGTGGAAGTGGTTTAAGTTTTAAAATGACCACAGAAAATCCAGCAA
GTGCAAGATTAATATTTACTCTCTTAAAAGAACATTTTAATATACACTCAAAGCTTATGGTTAAAAAAAGTAATTCTCTG
AAAAAGAATAATATTTATATGGTTGTTATTTCAGAAGATATGGGTGTTAGAGAGCTATTATACGAGACAGGAATACTACA
AGATATTGATGGCATAATGAACTTAAATTACCGAATTAATAAGAGCATGATTGAAACAGAAGAGAATAGAAGAGCCTATA
TAAGAGGCGCTTTCATTGGTGGGGGAAGTATAAGTAATCCAGAAAGAACATATCATTTAGAATTTGTTACTCATAGTGAA
GAATATGCTATAGATTTAAAGGATATTATAAATACTTTTGGATTGAATTCTAAAGTTATTCAAAGAAAAAGTAGCCATAT
AATTTATATTAAAGAAGGAGAACAAATTGTAGATTTGCTTAATATAATTGGGGCTCATGCATCTTTATTAGAACTTGAAA
ATATACGTATAATGAAGGAAATGAGAAACAATGTAAATAGACTTGTTAATTGTGAAACTGCTAACTTATCTAAAACAGTT
AACGCGGCAGTTAGACAAGTTGAAAGCATTAGATTAATTCAAAATAAAATAGGATTACAAAGATTACCGCAAAATCTTAG
GGAAGTGGCAGAACTAAGATTAAATTATCCAGATGAGTCATTAAAAGAATTGGGACAAATGCTTGATCCTCAGGTTGGAA
AATCTGGAATAAATCATAGACTAAGAAAAATTGAAAAAATAGCAGAAGAATTAAGAACCGGAAACTAA

Upstream 100 bases:

>100_bases
GATAATAGAATATATGTACTTATCTCAGCGTATTAAAGAAAGAGTAAAAGAAGAGAAAACTAAATCAATTCTAAAAAATT
TATAGATAAGGGGAAATAGG

Downstream 100 bases:

>100_bases
AAAGAATGATATGTTTTAAAAGTGGGCTGATATATGCATAAGTAAATTGGACTGAGTAATTGAAATTTGGAATGCTAAAA
TGAGTATAGTCCCATTTTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MSFSSKVKGEICRYVDMCKEDALAEISAIMKVSGTIAFSGSGLSFKMTTENPASARLIFTLLKEHFNIHSKLMVKKSNSL
KKNNIYMVVISEDMGVRELLYETGILQDIDGIMNLNYRINKSMIETEENRRAYIRGAFIGGGSISNPERTYHLEFVTHSE
EYAIDLKDIINTFGLNSKVIQRKSSHIIYIKEGEQIVDLLNIIGAHASLLELENIRIMKEMRNNVNRLVNCETANLSKTV
NAAVRQVESIRLIQNKIGLQRLPQNLREVAELRLNYPDESLKELGQMLDPQVGKSGINHRLRKIEKIAEELRTGN

Sequences:

>Translated_315_residues
MSFSSKVKGEICRYVDMCKEDALAEISAIMKVSGTIAFSGSGLSFKMTTENPASARLIFTLLKEHFNIHSKLMVKKSNSL
KKNNIYMVVISEDMGVRELLYETGILQDIDGIMNLNYRINKSMIETEENRRAYIRGAFIGGGSISNPERTYHLEFVTHSE
EYAIDLKDIINTFGLNSKVIQRKSSHIIYIKEGEQIVDLLNIIGAHASLLELENIRIMKEMRNNVNRLVNCETANLSKTV
NAAVRQVESIRLIQNKIGLQRLPQNLREVAELRLNYPDESLKELGQMLDPQVGKSGINHRLRKIEKIAEELRTGN
>Mature_314_residues
SFSSKVKGEICRYVDMCKEDALAEISAIMKVSGTIAFSGSGLSFKMTTENPASARLIFTLLKEHFNIHSKLMVKKSNSLK
KNNIYMVVISEDMGVRELLYETGILQDIDGIMNLNYRINKSMIETEENRRAYIRGAFIGGGSISNPERTYHLEFVTHSEE
YAIDLKDIINTFGLNSKVIQRKSSHIIYIKEGEQIVDLLNIIGAHASLLELENIRIMKEMRNNVNRLVNCETANLSKTVN
AAVRQVESIRLIQNKIGLQRLPQNLREVAELRLNYPDESLKELGQMLDPQVGKSGINHRLRKIEKIAEELRTGN

Specific function: May be required for sporulation

COG id: COG1481

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the whiA transcriptional regulatory family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): WHIA_CLOBA (B2UZY1)

Other databases:

- EMBL:   CP001078
- RefSeq:   YP_001922467.1
- GeneID:   6318668
- GenomeReviews:   CP001078_GR
- KEGG:   cbt:CLH_3090
- HOGENOM:   HBG485718
- OMA:   DSFFGIE
- ProtClustDB:   CLSK882446
- GO:   GO:0006350
- HAMAP:   MF_01420
- InterPro:   IPR004042
- InterPro:   IPR003802
- InterPro:   IPR023054
- InterPro:   IPR018478
- TIGRFAMs:   TIGR00647

Pfam domain/function: PF02650 HTH_WhiA; PF10298 WhiA_N

EC number: NA

Molecular weight: Translated: 35732; Mature: 35601

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: PS50819 INTEIN_ENDONUCLEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFSSKVKGEICRYVDMCKEDALAEISAIMKVSGTIAFSGSGLSFKMTTENPASARLIFT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEEEECCCCCHHHHHHH
LLKEHFNIHSKLMVKKSNSLKKNNIYMVVISEDMGVRELLYETGILQDIDGIMNLNYRIN
HHHHHHCHHHHEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHCCHHHHHHHHCCCEEEC
KSMIETEENRRAYIRGAFIGGGSISNPERTYHLEFVTHSEEYAIDLKDIINTFGLNSKVI
CHHHHCCCCCEEEEEEEEECCCCCCCCCEEEEEEEEECCCHHEEEHHHHHHHHCCCHHHH
QRKSSHIIYIKEGEQIVDLLNIIGAHASLLELENIRIMKEMRNNVNRLVNCETANLSKTV
HCCCCCEEEEECCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHH
NAAVRQVESIRLIQNKIGLQRLPQNLREVAELRLNYPDESLKELGQMLDPQVGKSGINHR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHH
LRKIEKIAEELRTGN
HHHHHHHHHHHHCCC
>Mature Secondary Structure 
SFSSKVKGEICRYVDMCKEDALAEISAIMKVSGTIAFSGSGLSFKMTTENPASARLIFT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEEEECCCCCHHHHHHH
LLKEHFNIHSKLMVKKSNSLKKNNIYMVVISEDMGVRELLYETGILQDIDGIMNLNYRIN
HHHHHHCHHHHEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHCCHHHHHHHHCCCEEEC
KSMIETEENRRAYIRGAFIGGGSISNPERTYHLEFVTHSEEYAIDLKDIINTFGLNSKVI
CHHHHCCCCCEEEEEEEEECCCCCCCCCEEEEEEEEECCCHHEEEHHHHHHHHCCCHHHH
QRKSSHIIYIKEGEQIVDLLNIIGAHASLLELENIRIMKEMRNNVNRLVNCETANLSKTV
HCCCCCEEEEECCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHH
NAAVRQVESIRLIQNKIGLQRLPQNLREVAELRLNYPDESLKELGQMLDPQVGKSGINHR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHH
LRKIEKIAEELRTGN
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA